Wall clock time and date at job start Wed Apr 1 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46630 * 2 1 4 4 N 1.46499 * 109.47060 * 240.00157 * 2 1 3 5 5 C 1.34778 * 120.00288 * 84.99811 * 4 2 1 6 6 O 1.21279 * 119.99876 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00068 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47330 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47502 * 179.97438 * 8 7 5 10 10 C 1.38228 * 120.00408 * 269.73079 * 9 8 7 11 11 C 1.38234 * 120.00388 * 179.76719 * 10 9 8 12 12 C 1.38240 * 119.99708 * 0.50002 * 11 10 9 13 13 C 1.38241 * 119.99616 * 359.74940 * 12 11 10 14 14 C 1.38232 * 120.00460 * 0.02562 * 13 12 11 15 15 C 1.50696 * 109.47154 * 119.99966 * 2 1 3 16 16 O 1.21284 * 120.00096 * 120.00107 * 15 2 1 17 17 N 1.34774 * 119.99838 * 300.00044 * 15 2 1 18 18 C 1.46506 * 120.00072 * 180.02562 * 17 15 2 19 19 C 1.50703 * 109.47289 * 179.97438 * 18 17 15 20 20 O 1.21285 * 119.99571 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99773 * 179.97438 * 19 18 17 22 22 C 1.37091 * 119.99763 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00286 * 0.02562 * 22 21 19 24 24 C 1.38956 * 120.00028 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99913 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00028 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47309 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47233 * 119.99838 * 26 24 22 29 29 H 1.48498 * 109.47163 * 239.99767 * 26 24 22 30 30 H 1.09000 * 109.47188 * 300.00151 * 1 2 3 31 31 H 1.09002 * 109.47288 * 60.00237 * 1 2 3 32 32 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00197 * 264.99911 * 4 2 1 34 34 H 1.09007 * 109.46798 * 299.99649 * 7 5 4 35 35 H 1.09003 * 109.47835 * 59.99764 * 7 5 4 36 36 H 1.08998 * 109.46741 * 300.00223 * 8 7 5 37 37 H 1.09005 * 109.46920 * 59.99723 * 8 7 5 38 38 H 1.08005 * 119.99740 * 359.97438 * 10 9 8 39 39 H 1.08001 * 120.00392 * 180.22987 * 11 10 9 40 40 H 1.07996 * 120.00128 * 179.73233 * 12 11 10 41 41 H 1.08000 * 119.99321 * 179.97438 * 13 12 11 42 42 H 1.07996 * 120.00349 * 179.97438 * 14 13 12 43 43 H 0.97001 * 120.00676 * 359.97438 * 17 15 2 44 44 H 1.09001 * 109.47060 * 300.00359 * 18 17 15 45 45 H 1.09004 * 109.47073 * 59.99848 * 18 17 15 46 46 H 0.96998 * 120.00166 * 0.02562 * 21 19 18 47 47 H 0.96996 * 120.00054 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8582 1.1584 -2.4118 7 6 2.6489 -0.7288 -3.5877 8 6 2.6998 0.2542 -4.7592 9 6 3.2022 -0.4562 -5.9896 10 6 4.5564 -0.4877 -6.2651 11 6 5.0176 -1.1435 -7.3912 12 6 4.1236 -1.7589 -8.2474 13 6 2.7689 -1.7229 -7.9746 14 6 2.3081 -1.0711 -6.8460 15 6 2.0324 -0.7104 1.2304 16 8 2.7297 -1.6965 1.1192 17 7 1.7068 -0.2499 2.4545 18 6 2.1956 -0.9402 3.6508 19 6 1.6937 -0.2294 4.8812 20 8 0.9959 0.7563 4.7698 21 7 2.0193 -0.6899 6.1053 22 6 1.5631 -0.0430 7.2246 23 1 0.9425 0.8352 7.1256 24 6 1.8993 -0.5174 8.4867 25 7 2.6549 -1.5858 8.6073 26 14 1.2771 0.3635 10.0119 27 1 0.4524 1.5305 9.6077 28 1 0.4524 -0.5696 10.8208 29 1 2.4324 0.8305 10.8197 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 3.6481 -1.1213 -3.3986 35 1 1.9760 -1.5507 -3.8326 36 1 1.7005 0.6463 -4.9481 37 1 3.3725 1.0763 -4.5146 38 1 5.2544 -0.0029 -5.5987 39 1 6.0760 -1.1713 -7.6045 40 1 4.4835 -2.2675 -9.1295 41 1 2.0704 -2.2033 -8.6438 42 1 1.2497 -1.0427 -6.6331 43 1 1.1494 0.5390 2.5436 44 1 1.8327 -1.9680 3.6509 45 1 3.2856 -0.9397 3.6506 46 1 2.5770 -1.4785 6.1943 47 1 2.8893 -1.9171 9.4882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344188198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:17 Heat of formation + Delta-G solvation = -101.511701 kcal Electronic energy + Delta-G solvation = -28311.776574 eV Core-core repulsion = 24072.694822 eV Total energy + Delta-G solvation = -4239.081752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55177 -39.74285 -39.17839 -38.19088 -35.23764 -34.60722 -34.31935 -33.82316 -31.53061 -31.29064 -31.24769 -29.68642 -27.70786 -25.49764 -24.78081 -23.62348 -22.93329 -21.40758 -20.48841 -20.23675 -19.68990 -18.32417 -17.92498 -17.21297 -16.70893 -16.40646 -16.12029 -15.64286 -15.44699 -15.27751 -15.15689 -15.09432 -14.51539 -14.28294 -14.19634 -13.80610 -13.76527 -13.51245 -13.41931 -13.34741 -13.04626 -12.67790 -12.49289 -12.27907 -12.21057 -12.01571 -11.75187 -11.67543 -11.62666 -11.36437 -11.17831 -11.17662 -10.44228 -10.36701 -10.13049 -9.92521 -9.69534 -9.33936 -9.28478 -9.06010 -8.96505 -8.70036 -8.15304 -6.56227 -3.98330 0.97370 1.03715 2.39495 2.58161 2.71488 3.07106 3.19920 3.25876 3.35114 3.45470 3.67765 4.07132 4.29314 4.47129 4.60094 4.63590 4.66383 4.77046 4.77990 4.79420 4.87524 4.94415 5.00960 5.12304 5.16291 5.16580 5.23993 5.46354 5.49806 5.60674 5.61758 5.71484 5.79411 5.82834 5.86018 5.96500 5.99041 6.10513 6.15688 6.16670 6.28426 6.49821 6.64468 7.28519 7.42006 7.58826 7.86712 8.00018 8.20530 8.39595 8.99890 9.33636 9.81078 10.60590 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034832 B = 0.001388 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.676246 B =20171.136911 C =20554.283755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.116 0.884 4 N -0.712 5.712 5 C 0.516 3.484 6 O -0.541 6.541 7 C -0.133 4.133 8 C -0.066 4.066 9 C -0.081 4.081 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.126 4.126 13 C -0.119 4.119 14 C -0.117 4.117 15 C 0.509 3.491 16 O -0.547 6.547 17 N -0.699 5.699 18 C 0.108 3.892 19 C 0.426 3.574 20 O -0.596 6.596 21 N -0.547 5.547 22 C -0.306 4.306 23 H 0.107 0.893 24 C 0.026 3.974 25 N -0.894 5.894 26 Si 0.933 3.067 27 H -0.267 1.267 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.410 0.590 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.414 0.586 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.396 0.604 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -2.428 -29.246 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.133 0.867 4 N -0.366 5.366 5 C 0.303 3.697 6 O -0.418 6.418 7 C -0.173 4.173 8 C -0.103 4.103 9 C -0.081 4.081 10 C -0.134 4.134 11 C -0.137 4.137 12 C -0.144 4.144 13 C -0.137 4.137 14 C -0.135 4.135 15 C 0.294 3.706 16 O -0.425 6.425 17 N -0.353 5.353 18 C -0.019 4.019 19 C 0.212 3.788 20 O -0.483 6.483 21 N -0.182 5.182 22 C -0.435 4.435 23 H 0.124 0.876 24 C -0.176 4.176 25 N -0.534 5.534 26 Si 0.759 3.241 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.252 0.748 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.230 0.770 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.307 -1.728 -29.197 29.277 hybrid contribution 0.039 -0.355 1.049 1.108 sum 1.346 -2.083 -28.148 28.257 Atomic orbital electron populations 1.22144 0.92602 1.03217 1.03898 1.20733 0.95862 0.98162 0.83497 0.86674 1.45801 1.67374 1.14918 1.08520 1.20693 0.77263 0.87305 0.84436 1.90716 1.50034 1.15974 1.85100 1.21640 1.03668 0.99681 0.92321 1.20346 1.03118 0.96783 0.90077 1.19923 0.93558 0.98227 0.96438 1.21121 0.95100 0.99629 0.97577 1.21174 0.99720 0.97874 0.94902 1.21169 0.93534 1.00031 0.99678 1.21164 0.95743 0.99404 0.97416 1.21103 0.99603 0.98030 0.94739 1.20472 0.80559 0.84832 0.84757 1.90683 1.38528 1.26600 1.86731 1.45638 1.52818 1.32417 1.04390 1.20999 1.00017 0.96616 0.84277 1.19702 0.86832 0.87775 0.84516 1.90504 1.43053 1.28767 1.85987 1.41795 1.44910 1.27331 1.04170 1.19792 1.29707 1.11114 0.82898 0.87558 1.25332 0.96503 0.96335 0.99479 1.69618 1.35863 1.22532 1.25365 0.85754 0.78568 0.79274 0.80484 1.19086 1.20586 1.20589 0.90413 0.90837 0.91725 0.75277 0.88483 0.88575 0.90034 0.90022 0.85944 0.86087 0.86227 0.86118 0.85991 0.74779 0.89641 0.89687 0.77037 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.38 37.16 0.35 -1.29 16 2 C 0.13 1.47 2.98 -69.08 -0.21 1.26 16 3 H 0.12 1.40 7.58 -51.93 -0.39 1.00 16 4 N -0.71 -7.41 4.95 -54.93 -0.27 -7.69 16 5 C 0.52 5.39 7.79 -10.99 -0.09 5.31 16 6 O -0.54 -7.41 15.65 5.56 0.09 -7.32 16 7 C -0.13 -0.97 5.68 -27.88 -0.16 -1.12 16 8 C -0.07 -0.50 4.63 -27.88 -0.13 -0.63 16 9 C -0.08 -0.61 5.13 -104.63 -0.54 -1.15 16 10 C -0.12 -0.85 9.70 -39.59 -0.38 -1.23 16 11 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 12 C -0.13 -0.82 10.05 -39.58 -0.40 -1.22 16 13 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 14 C -0.12 -0.82 9.70 -39.58 -0.38 -1.21 16 15 C 0.51 7.28 7.22 -10.99 -0.08 7.20 16 16 O -0.55 -9.06 15.84 5.55 0.09 -8.97 16 17 N -0.70 -10.78 5.42 -61.47 -0.33 -11.11 16 18 C 0.11 1.89 6.15 -5.19 -0.03 1.85 16 19 C 0.43 9.43 7.85 -10.98 -0.09 9.34 16 20 O -0.60 -14.79 15.24 5.55 0.08 -14.71 16 21 N -0.55 -13.21 5.29 -10.96 -0.06 -13.27 16 22 C -0.31 -8.15 9.68 -14.93 -0.14 -8.29 16 23 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 24 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 25 N -0.89 -23.44 13.05 55.50 0.72 -22.72 16 26 Si 0.93 20.21 29.55 -169.99 -5.02 15.19 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 29 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 30 H 0.08 0.77 7.57 -51.93 -0.39 0.38 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.41 3.92 7.79 -40.82 -0.32 3.60 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 37 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.41 6.31 6.86 -40.82 -0.28 6.03 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.40 9.17 7.90 -40.82 -0.32 8.85 16 47 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -32.24 406.25 -8.45 -40.69 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -6.70 Total: 16.75 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -3.17 Total: 7.02 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.06 Total: -54.78 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: 0.26 Total: -31.00 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.24 -8.45 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344188198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.820 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds