Wall clock time and date at job start Wed Apr 1 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46630 * 2 1 4 4 N 1.46499 * 109.47060 * 240.00157 * 2 1 3 5 5 C 1.34778 * 120.00288 * 84.99811 * 4 2 1 6 6 O 1.21279 * 119.99876 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00068 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47330 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47502 * 179.97438 * 8 7 5 10 10 C 1.38228 * 120.00408 * 269.73079 * 9 8 7 11 11 C 1.38234 * 120.00388 * 179.76719 * 10 9 8 12 12 C 1.38240 * 119.99708 * 0.50002 * 11 10 9 13 13 C 1.38241 * 119.99616 * 359.74940 * 12 11 10 14 14 C 1.38232 * 120.00460 * 0.02562 * 13 12 11 15 15 C 1.50696 * 109.47154 * 119.99966 * 2 1 3 16 16 O 1.21284 * 120.00096 * 120.00107 * 15 2 1 17 17 N 1.34774 * 119.99838 * 300.00044 * 15 2 1 18 18 C 1.46506 * 120.00072 * 180.02562 * 17 15 2 19 19 C 1.50703 * 109.47289 * 179.97438 * 18 17 15 20 20 O 1.21285 * 119.99571 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99773 * 179.97438 * 19 18 17 22 22 C 1.37091 * 119.99763 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00286 * 0.02562 * 22 21 19 24 24 C 1.38956 * 120.00028 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99913 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00028 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47309 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47233 * 119.99838 * 26 24 22 29 29 H 1.48498 * 109.47163 * 239.99767 * 26 24 22 30 30 H 1.09000 * 109.47188 * 300.00151 * 1 2 3 31 31 H 1.09002 * 109.47288 * 60.00237 * 1 2 3 32 32 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00197 * 264.99911 * 4 2 1 34 34 H 1.09007 * 109.46798 * 299.99649 * 7 5 4 35 35 H 1.09003 * 109.47835 * 59.99764 * 7 5 4 36 36 H 1.08998 * 109.46741 * 300.00223 * 8 7 5 37 37 H 1.09005 * 109.46920 * 59.99723 * 8 7 5 38 38 H 1.08005 * 119.99740 * 359.97438 * 10 9 8 39 39 H 1.08001 * 120.00392 * 180.22987 * 11 10 9 40 40 H 1.07996 * 120.00128 * 179.73233 * 12 11 10 41 41 H 1.08000 * 119.99321 * 179.97438 * 13 12 11 42 42 H 1.07996 * 120.00349 * 179.97438 * 14 13 12 43 43 H 0.97001 * 120.00676 * 359.97438 * 17 15 2 44 44 H 1.09001 * 109.47060 * 300.00359 * 18 17 15 45 45 H 1.09004 * 109.47073 * 59.99848 * 18 17 15 46 46 H 0.96998 * 120.00166 * 0.02562 * 21 19 18 47 47 H 0.96996 * 120.00054 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8582 1.1584 -2.4118 7 6 2.6489 -0.7288 -3.5877 8 6 2.6998 0.2542 -4.7592 9 6 3.2022 -0.4562 -5.9896 10 6 4.5564 -0.4877 -6.2651 11 6 5.0176 -1.1435 -7.3912 12 6 4.1236 -1.7589 -8.2474 13 6 2.7689 -1.7229 -7.9746 14 6 2.3081 -1.0711 -6.8460 15 6 2.0324 -0.7104 1.2304 16 8 2.7297 -1.6965 1.1192 17 7 1.7068 -0.2499 2.4545 18 6 2.1956 -0.9402 3.6508 19 6 1.6937 -0.2294 4.8812 20 8 0.9959 0.7563 4.7698 21 7 2.0193 -0.6899 6.1053 22 6 1.5631 -0.0430 7.2246 23 1 0.9425 0.8352 7.1256 24 6 1.8993 -0.5174 8.4867 25 7 2.6549 -1.5858 8.6073 26 14 1.2771 0.3635 10.0119 27 1 0.4524 1.5305 9.6077 28 1 0.4524 -0.5696 10.8208 29 1 2.4324 0.8305 10.8197 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 3.6481 -1.1213 -3.3986 35 1 1.9760 -1.5507 -3.8326 36 1 1.7005 0.6463 -4.9481 37 1 3.3725 1.0763 -4.5146 38 1 5.2544 -0.0029 -5.5987 39 1 6.0760 -1.1713 -7.6045 40 1 4.4835 -2.2675 -9.1295 41 1 2.0704 -2.2033 -8.6438 42 1 1.2497 -1.0427 -6.6331 43 1 1.1494 0.5390 2.5436 44 1 1.8327 -1.9680 3.6509 45 1 3.2856 -0.9397 3.6506 46 1 2.5770 -1.4785 6.1943 47 1 2.8893 -1.9171 9.4882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344188198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:16 Heat of formation + Delta-G solvation = -123.434945 kcal Electronic energy + Delta-G solvation = -28312.727238 eV Core-core repulsion = 24072.694822 eV Total energy + Delta-G solvation = -4240.032415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58793 -40.67208 -40.07889 -39.71944 -36.33137 -36.12568 -35.42031 -34.95425 -33.38854 -32.25732 -31.72518 -30.35323 -29.15992 -26.65713 -26.08469 -24.63736 -23.41613 -22.05852 -21.42017 -21.34113 -21.27844 -20.10286 -19.11213 -18.03746 -17.72758 -17.42529 -16.96788 -16.96101 -16.70721 -16.48175 -16.22563 -15.92276 -15.85064 -15.62626 -15.48232 -14.97256 -14.69799 -14.36931 -14.16716 -13.98673 -13.97029 -13.74529 -13.61820 -13.55589 -13.38694 -13.31610 -12.91892 -12.78331 -12.67463 -12.44658 -12.18505 -12.11563 -11.87380 -11.70296 -11.58203 -11.12332 -10.98380 -10.56898 -10.31655 -10.21552 -10.08844 -9.77974 -9.57671 -8.51666 -6.01522 0.46666 0.54231 1.34499 1.39684 1.43159 1.54211 1.57864 1.72997 1.90486 2.24662 2.37128 2.92494 3.09937 3.15875 3.46573 3.66690 3.94861 3.98412 4.02673 4.08133 4.18954 4.20612 4.27090 4.29812 4.37228 4.41596 4.42095 4.61349 4.66804 4.67152 4.70985 4.77639 4.97491 5.09669 5.12488 5.17463 5.22416 5.22896 5.31889 5.38640 5.62266 5.67692 5.76470 5.91412 6.16811 6.35425 6.46612 6.48550 6.97865 7.03860 7.17546 7.43910 7.94246 8.65312 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034832 B = 0.001388 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.676246 B =20171.136911 C =20554.283755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.132 3.868 3 H 0.112 0.888 4 N -0.708 5.708 5 C 0.517 3.483 6 O -0.576 6.576 7 C -0.124 4.124 8 C -0.059 4.059 9 C -0.090 4.090 10 C -0.130 4.130 11 C -0.128 4.128 12 C -0.134 4.134 13 C -0.127 4.127 14 C -0.127 4.127 15 C 0.515 3.485 16 O -0.567 6.567 17 N -0.700 5.700 18 C 0.122 3.878 19 C 0.431 3.569 20 O -0.624 6.624 21 N -0.559 5.559 22 C -0.337 4.337 23 H 0.086 0.914 24 C -0.009 4.009 25 N -0.915 5.915 26 Si 0.995 3.005 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.416 0.584 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.415 0.585 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.399 0.601 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -3.260 -30.227 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.129 0.871 4 N -0.362 5.362 5 C 0.305 3.695 6 O -0.456 6.456 7 C -0.164 4.164 8 C -0.097 4.097 9 C -0.090 4.090 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.152 4.152 13 C -0.145 4.145 14 C -0.145 4.145 15 C 0.302 3.698 16 O -0.446 6.446 17 N -0.354 5.354 18 C -0.006 4.006 19 C 0.218 3.782 20 O -0.512 6.512 21 N -0.194 5.194 22 C -0.466 4.466 23 H 0.104 0.896 24 C -0.209 4.209 25 N -0.555 5.555 26 Si 0.818 3.182 27 H -0.195 1.195 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.254 0.746 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.233 0.767 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.349 -2.588 -30.198 30.339 hybrid contribution 0.047 -0.100 1.258 1.262 sum 1.396 -2.689 -28.941 29.099 Atomic orbital electron populations 1.22099 0.91308 1.03690 1.04103 1.20657 0.96749 0.97581 0.82720 0.87061 1.45811 1.67160 1.15136 1.08118 1.21223 0.76351 0.86897 0.84990 1.90705 1.51633 1.17597 1.85620 1.21643 1.04646 0.99669 0.90411 1.20245 1.02392 0.96585 0.90513 1.19928 0.93851 0.98717 0.96523 1.21301 0.95270 1.00056 0.98158 1.21433 1.00729 0.97678 0.94746 1.21475 0.93610 0.99854 1.00214 1.21448 0.96286 0.99237 0.97512 1.21308 1.00167 0.98092 0.94935 1.20827 0.79768 0.84401 0.84848 1.90675 1.39380 1.27570 1.86977 1.45639 1.53076 1.32473 1.04241 1.20821 1.00475 0.96632 0.82682 1.20442 0.85364 0.87094 0.85268 1.90485 1.43982 1.30035 1.86660 1.41836 1.45529 1.27632 1.04414 1.19772 1.30929 1.11483 0.84451 0.89587 1.26088 0.96317 0.96869 1.01670 1.69676 1.36282 1.23261 1.26309 0.84837 0.78186 0.78118 0.77009 1.19461 1.19649 1.19744 0.90207 0.90634 0.91089 0.74564 0.87195 0.86533 0.90736 0.91227 0.85420 0.84621 0.84453 0.84403 0.84991 0.74600 0.88208 0.88595 0.76669 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.38 71.98 0.68 -2.28 16 2 C 0.13 2.94 2.98 44.25 0.13 3.07 16 3 H 0.11 2.63 7.58 -2.39 -0.02 2.61 16 4 N -0.71 -13.83 4.95 -446.10 -2.21 -16.04 16 5 C 0.52 10.29 7.79 87.66 0.68 10.97 16 6 O -0.58 -15.60 15.65 -3.03 -0.05 -15.65 16 7 C -0.12 -1.63 5.68 29.85 0.17 -1.46 16 8 C -0.06 -0.88 4.63 29.85 0.14 -0.75 16 9 C -0.09 -1.28 5.13 -19.87 -0.10 -1.38 16 10 C -0.13 -1.79 9.70 22.27 0.22 -1.57 16 11 C -0.13 -1.57 10.05 22.27 0.22 -1.34 16 12 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 13 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 14 C -0.13 -1.64 9.70 22.27 0.22 -1.42 16 15 C 0.52 14.10 7.22 87.66 0.63 14.73 16 16 O -0.57 -17.90 15.84 -3.04 -0.05 -17.95 16 17 N -0.70 -20.92 5.42 -466.77 -2.53 -23.45 16 18 C 0.12 4.10 6.15 85.63 0.53 4.63 16 19 C 0.43 19.08 7.85 87.66 0.69 19.76 16 20 O -0.62 -31.16 15.24 -3.05 -0.05 -31.21 16 21 N -0.56 -27.18 5.29 -306.99 -1.62 -28.81 16 22 C -0.34 -18.21 9.68 84.04 0.81 -17.39 16 23 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 24 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 25 N -0.92 -47.71 13.05 21.66 0.28 -47.42 16 26 Si 1.00 41.15 29.55 68.60 2.03 43.18 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 29 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 30 H 0.08 1.51 7.57 -2.39 -0.02 1.49 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 7.25 7.79 -92.71 -0.72 6.53 16 34 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.20 8.04 -2.39 -0.02 1.18 16 37 H 0.07 1.19 8.04 -2.38 -0.02 1.17 16 38 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 42 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.42 12.42 6.86 -92.71 -0.64 11.78 16 44 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 45 H 0.10 3.08 8.14 -2.38 -0.02 3.07 16 46 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 47 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -68.32 406.25 0.67 -67.66 By element: Atomic # 1 Polarization: 47.69 SS G_CDS: -1.07 Total: 46.62 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 5.93 Total: 23.06 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -6.08 Total: -115.72 kcal Atomic # 8 Polarization: -64.67 SS G_CDS: -0.14 Total: -64.81 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -68.32 0.67 -67.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344188198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.778 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds