Wall clock time and date at job start Wed Apr 1 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99616 * 2 1 4 4 O 1.20823 * 120.00342 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99646 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47177 * 323.55845 * 5 3 2 7 7 C 1.52996 * 109.46996 * 83.56468 * 5 3 2 8 8 N 1.46510 * 109.46977 * 203.56263 * 5 3 2 9 9 C 1.46498 * 119.99628 * 294.65197 * 8 5 3 10 10 C 1.53781 * 113.61340 * 215.06451 * 9 8 5 11 11 C 1.53778 * 87.08240 * 220.02018 * 10 9 8 12 12 C 1.53777 * 87.08030 * 25.43124 * 11 10 9 13 13 S 1.65599 * 120.00122 * 114.92409 * 8 5 3 14 14 O 1.42095 * 104.27545 * 206.07208 * 13 8 5 15 15 O 1.42103 * 104.27384 * 333.92860 * 13 8 5 16 16 C 1.81398 * 104.44776 * 89.99926 * 13 8 5 17 17 C 1.53001 * 109.47111 * 179.97438 * 16 13 8 18 18 C 1.53001 * 109.47005 * 300.00451 * 17 16 13 19 19 C 1.53005 * 109.46814 * 60.00068 * 17 16 13 20 20 C 1.50703 * 109.47260 * 180.02562 * 17 16 13 21 21 H 1.07997 * 119.99750 * 359.97438 * 20 17 16 22 22 C 1.37872 * 119.99859 * 180.02562 * 20 17 16 23 23 N 1.31514 * 120.00272 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 119.99903 * 179.97438 * 22 20 17 25 25 H 1.48508 * 109.47133 * 59.99782 * 24 22 20 26 26 H 1.48501 * 109.47440 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47410 * 300.00062 * 24 22 20 28 28 H 1.08997 * 109.47266 * 60.00034 * 1 2 3 29 29 H 1.09006 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47107 * 299.99574 * 1 2 3 31 31 H 1.08995 * 109.47587 * 54.39254 * 7 5 3 32 32 H 1.09005 * 109.46859 * 174.39241 * 7 5 3 33 33 H 1.09003 * 109.46977 * 294.38866 * 7 5 3 34 34 H 1.08999 * 112.85136 * 346.36692 * 9 8 5 35 35 H 1.09002 * 113.61378 * 334.57034 * 10 9 8 36 36 H 1.09004 * 113.61564 * 105.46508 * 10 9 8 37 37 H 1.09003 * 113.61028 * 270.88343 * 11 10 9 38 38 H 1.08998 * 113.61739 * 139.98250 * 11 10 9 39 39 H 1.09005 * 113.61289 * 220.01744 * 12 11 10 40 40 H 1.08994 * 113.69216 * 89.13413 * 12 11 10 41 41 H 1.08997 * 109.47244 * 300.00305 * 16 13 8 42 42 H 1.08997 * 109.46901 * 59.99915 * 16 13 8 43 43 H 1.08995 * 109.47496 * 60.00018 * 18 17 16 44 44 H 1.09000 * 109.46874 * 179.97438 * 18 17 16 45 45 H 1.09008 * 109.46959 * 299.99433 * 18 17 16 46 46 H 1.08994 * 109.47304 * 60.00343 * 19 17 16 47 47 H 1.09003 * 109.46528 * 180.02562 * 19 17 16 48 48 H 1.08995 * 109.47417 * 299.99816 * 19 17 16 49 49 H 0.96996 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9722 0.4685 0.6114 7 6 4.0846 1.1399 -1.4326 8 7 3.9875 2.5650 0.5527 9 6 3.6675 3.8054 -0.1581 10 6 4.7588 4.8824 -0.0394 11 6 3.6214 5.9073 0.1045 12 6 2.7554 4.7538 0.6377 13 16 4.8309 2.6206 1.9767 14 8 4.5359 3.9047 2.5088 15 8 4.4422 1.4372 2.6606 16 6 6.5717 2.5237 1.4757 17 6 7.4632 2.5670 2.7183 18 6 7.2219 3.8754 3.4738 19 6 7.1276 1.3834 3.6281 20 6 8.9094 2.4871 2.3021 21 1 9.1668 2.4125 1.2559 22 6 9.9037 2.5082 3.2570 23 7 9.5902 2.5986 4.5310 24 14 11.6962 2.4085 2.7411 25 1 12.0220 3.5575 1.8584 26 1 12.5615 2.4493 3.9473 27 1 11.9304 1.1387 2.0074 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.6022 1.8850 -2.0652 32 1 5.1633 1.2962 -1.4450 33 1 3.8576 0.1422 -1.8085 34 1 3.3321 3.6328 -1.1807 35 1 5.3738 4.7842 0.8552 36 1 5.3482 5.0088 -0.9476 37 1 3.2740 6.3104 -0.8468 38 1 3.8220 6.6812 0.8453 39 1 1.7273 4.7764 0.2762 40 1 2.8214 4.6194 1.7173 41 1 6.7434 1.5918 0.9371 42 1 6.8107 3.3671 0.8279 43 1 6.1760 3.9336 3.7749 44 1 7.8567 3.9060 4.3593 45 1 7.4610 4.7186 2.8256 46 1 7.2995 0.4513 3.0900 47 1 7.7625 1.4146 4.5136 48 1 6.0817 1.4416 3.9292 49 1 10.2897 2.6138 5.2027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451459932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:22 Heat of formation + Delta-G solvation = -122.523322 kcal Electronic energy + Delta-G solvation = -31880.459733 eV Core-core repulsion = 27743.618049 eV Total energy + Delta-G solvation = -4136.841684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69314 -39.06946 -37.00036 -36.36802 -36.30826 -35.34977 -35.00004 -31.70671 -30.40201 -27.95459 -26.88876 -25.76994 -25.46898 -25.25000 -25.14109 -23.71436 -20.95631 -20.20942 -19.39345 -18.35853 -17.84731 -17.28054 -16.72005 -16.40359 -16.05332 -15.86249 -15.31351 -15.07581 -14.79061 -14.53394 -14.01182 -13.96369 -13.65319 -13.14645 -13.03509 -12.85621 -12.62932 -12.56802 -12.40689 -12.36857 -12.18512 -11.89389 -11.77334 -11.60267 -11.47829 -11.15166 -11.08903 -10.95832 -10.90614 -10.81047 -10.71715 -10.58537 -10.40636 -10.31903 -10.24247 -10.11446 -9.94128 -9.67987 -9.58429 -8.96747 -8.68088 -8.42282 -6.05682 -4.18064 0.68561 2.10510 2.54402 2.98384 3.25508 3.31367 3.32643 4.25873 4.35721 4.40546 4.49425 4.64255 4.78751 4.81974 4.90818 4.94877 4.99449 5.03115 5.17425 5.19187 5.22947 5.33204 5.39505 5.54125 5.61566 5.67557 5.76718 5.87265 5.96061 6.07144 6.11175 6.23549 6.32763 6.34537 6.45040 6.51788 6.66291 6.75769 6.84283 6.87283 7.00523 7.27884 7.46536 7.65231 7.67635 7.94759 8.06204 8.29663 8.80197 9.47567 10.95617 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.003843 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.228141 B = 7284.275414 C = 7875.680513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.454 3.546 4 O -0.490 6.490 5 C 0.157 3.843 6 H 0.132 0.868 7 C -0.157 4.157 8 N -0.984 5.984 9 C 0.144 3.856 10 C -0.175 4.175 11 C -0.132 4.132 12 C -0.151 4.151 13 S 2.588 3.412 14 O -0.948 6.948 15 O -0.963 6.963 16 C -0.581 4.581 17 C 0.083 3.917 18 C -0.164 4.164 19 C -0.165 4.165 20 C -0.503 4.503 21 H 0.059 0.941 22 C 0.066 3.934 23 N -0.883 5.883 24 Si 0.896 3.104 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.028 0.972 44 H 0.095 0.905 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.096 0.904 48 H 0.026 0.974 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 -1.937 -12.310 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.293 3.707 4 O -0.375 6.375 5 C 0.048 3.952 6 H 0.150 0.850 7 C -0.216 4.216 8 N -0.816 5.816 9 C 0.039 3.961 10 C -0.214 4.214 11 C -0.170 4.170 12 C -0.190 4.190 13 S 2.688 3.312 14 O -0.938 6.938 15 O -0.954 6.954 16 C -0.715 4.715 17 C 0.081 3.919 18 C -0.221 4.221 19 C -0.222 4.222 20 C -0.542 4.542 21 H 0.077 0.923 22 C -0.137 4.137 23 N -0.521 5.521 24 Si 0.724 3.276 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.046 0.954 44 H 0.114 0.886 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.114 0.886 48 H 0.045 0.955 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.272 -1.571 -11.270 18.253 hybrid contribution 1.168 -0.099 -0.824 1.433 sum -13.104 -1.671 -12.095 17.911 Atomic orbital electron populations 1.23250 0.76539 1.03602 1.02464 1.86530 1.23299 1.33503 1.84090 1.24263 0.92374 0.81597 0.72448 1.90646 1.66689 1.36109 1.44077 1.20303 0.87430 0.88248 0.99252 0.84993 1.22134 1.03222 1.03363 0.92895 1.57989 1.70103 1.09799 1.43747 1.22319 0.96562 0.80217 0.97031 1.23811 0.97676 0.96412 1.03485 1.22527 0.96643 0.96840 1.00979 1.23620 0.98196 0.94480 1.02714 1.06081 0.78007 0.74461 0.72627 1.93516 1.83536 1.40773 1.75965 1.93533 1.82215 1.49560 1.70070 1.30657 1.19264 1.10080 1.11456 1.17940 0.93896 0.93500 0.86584 1.22279 0.99393 0.97096 1.03363 1.22287 0.99057 0.97700 1.03182 1.20885 0.88897 1.51301 0.93132 0.92290 1.24929 0.99044 0.94746 0.94935 1.69786 1.32865 1.49637 0.99838 0.86600 0.84431 0.78627 0.77985 1.20244 1.21181 1.20246 0.92032 0.88128 0.91884 0.91391 0.89608 0.90189 0.87549 0.88228 0.90731 0.90660 0.90643 0.91510 0.87519 0.86317 0.85951 0.95360 0.88627 0.94412 0.94405 0.88564 0.95498 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.35 10.57 -39.27 -0.41 -4.76 16 3 C 0.45 6.23 7.17 36.01 0.26 6.48 16 4 O -0.49 -7.54 14.06 -18.75 -0.26 -7.80 16 5 C 0.16 2.02 3.04 -69.08 -0.21 1.81 16 6 H 0.13 1.69 6.98 -51.93 -0.36 1.32 16 7 C -0.16 -1.43 8.98 37.16 0.33 -1.10 16 8 N -0.98 -14.65 2.70 -100.65 -0.27 -14.92 16 9 C 0.14 1.97 2.75 -67.12 -0.18 1.78 16 10 C -0.18 -2.38 6.84 -25.92 -0.18 -2.56 16 11 C -0.13 -1.69 8.08 -25.92 -0.21 -1.90 16 12 C -0.15 -2.24 6.62 -25.92 -0.17 -2.41 16 13 S 2.59 48.32 3.71 -107.50 -0.40 47.92 16 14 O -0.95 -19.23 10.35 -57.54 -0.60 -19.82 16 15 O -0.96 -20.23 14.25 -57.54 -0.82 -21.05 16 16 C -0.58 -11.02 4.86 37.16 0.18 -10.84 16 17 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 18 C -0.16 -3.94 7.77 37.16 0.29 -3.65 16 19 C -0.16 -3.99 7.78 37.16 0.29 -3.70 16 20 C -0.50 -12.87 8.01 -34.44 -0.28 -13.15 16 21 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 22 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 23 N -0.88 -23.75 9.35 55.43 0.52 -23.23 16 24 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 31 H 0.07 0.58 6.85 -51.93 -0.36 0.22 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.11 1.23 6.66 -51.93 -0.35 0.89 16 35 H 0.10 1.58 4.25 -51.93 -0.22 1.36 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 40 H 0.11 1.87 5.78 -51.93 -0.30 1.57 16 41 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 42 H 0.12 2.11 6.73 -51.93 -0.35 1.76 16 43 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 44 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 45 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 48 H 0.03 0.62 5.47 -51.93 -0.28 0.34 16 49 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -31.51 377.77 -8.29 -39.81 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.73 Total: 7.26 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 1.02 Total: -24.34 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.25 Total: -38.15 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -2.09 Total: -53.44 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 48.32 SS G_CDS: -0.40 Total: 47.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.51 -8.29 -39.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451459932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.717 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds