Wall clock time and date at job start Wed Apr 1 2020 05:31:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08997 * 109.46821 * 2 1
4 4 N 1.46496 * 109.47227 * 120.00200 * 2 1 3
5 5 C 1.39876 * 120.00122 * 275.00046 * 4 2 1
6 6 C 1.38897 * 119.94861 * 359.72789 * 5 4 2
7 7 C 1.38230 * 120.12043 * 179.76647 * 6 5 4
8 8 C 1.38507 * 119.90646 * 0.45454 * 7 6 5
9 9 C 1.39410 * 120.11016 * 359.82951 * 8 7 6
10 10 C 1.38343 * 119.93516 * 359.93659 * 9 8 7
11 11 O 1.35992 * 119.45245 * 179.90946 * 9 8 7
12 12 C 1.42988 * 116.73535 * 327.16490 * 11 9 8
13 13 C 1.50754 * 109.64484 * 46.48599 * 12 11 9
14 14 O 1.21309 * 120.13939 * 148.60758 * 13 12 11
15 15 N 1.35091 * 119.72424 * 328.63323 * 13 12 11
16 16 C 1.46505 * 120.51311 * 181.70641 * 15 13 12
17 17 C 1.50706 * 109.46913 * 240.00627 * 2 1 3
18 18 O 1.21281 * 119.99660 * 239.99632 * 17 2 1
19 19 N 1.34771 * 120.00094 * 59.99917 * 17 2 1
20 20 C 1.46501 * 120.00308 * 359.97438 * 19 17 2
21 21 C 1.46506 * 119.99594 * 179.97438 * 19 17 2
22 22 C 1.50699 * 109.46928 * 90.00049 * 21 19 17
23 23 H 1.08003 * 119.99963 * 0.02562 * 22 21 19
24 24 C 1.37873 * 119.99865 * 179.97438 * 22 21 19
25 25 N 1.31514 * 120.00518 * 0.02562 * 24 22 21
26 26 Si 1.86803 * 119.99987 * 179.97438 * 24 22 21
27 27 H 1.48503 * 109.47000 * 60.00482 * 26 24 22
28 28 H 1.48506 * 109.47330 * 180.02562 * 26 24 22
29 29 H 1.48500 * 109.47185 * 300.00291 * 26 24 22
30 30 H 1.08992 * 109.47310 * 299.99576 * 1 2 3
31 31 H 1.09003 * 109.47197 * 60.00227 * 1 2 3
32 32 H 1.09000 * 109.46579 * 179.97438 * 1 2 3
33 33 H 0.97001 * 119.99902 * 95.00338 * 4 2 1
34 34 H 1.08005 * 119.93802 * 359.97438 * 6 5 4
35 35 H 1.07995 * 120.04303 * 180.24693 * 7 6 5
36 36 H 1.07998 * 120.08401 * 180.02562 * 10 9 8
37 37 H 1.09005 * 109.44334 * 166.53482 * 12 11 9
38 38 H 1.08996 * 109.44905 * 286.46580 * 12 11 9
39 39 H 1.09000 * 109.47521 * 359.97438 * 16 15 13
40 40 H 1.09004 * 109.46892 * 120.00199 * 16 15 13
41 41 H 1.08999 * 109.47001 * 239.99547 * 16 15 13
42 42 H 1.08999 * 109.46532 * 269.99942 * 20 19 17
43 43 H 1.09000 * 109.46877 * 29.99967 * 20 19 17
44 44 H 1.09000 * 109.47251 * 150.00072 * 20 19 17
45 45 H 1.09004 * 109.47073 * 209.99877 * 21 19 17
46 46 H 1.09000 * 109.47212 * 329.99960 * 21 19 17
47 47 H 0.96992 * 120.00316 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1520 0.0071 2.4010
6 6 1.8267 1.3561 2.4609
7 6 1.9528 2.0479 3.6510
8 6 2.4134 1.3963 4.7831
9 6 2.7463 0.0438 4.7248
10 6 2.6151 -0.6488 3.5344
11 8 3.1989 -0.5822 5.8440
12 6 3.9706 0.2055 6.7542
13 6 3.2850 1.5278 6.9873
14 8 3.3920 2.0891 8.0573
15 7 2.5505 2.0847 5.9997
16 6 1.9075 3.3866 6.1946
17 6 2.0323 -0.7103 -1.2306
18 8 2.7296 -1.6964 -1.1194
19 7 1.7067 -0.2498 -2.4546
20 6 0.8640 0.9411 -2.5890
21 6 2.1956 -0.9400 -3.6508
22 6 1.2034 -1.9974 -4.0613
23 1 0.2989 -2.1407 -3.4886
24 6 1.4497 -2.7813 -5.1684
25 7 2.5508 -2.6066 -5.8661
26 14 0.2202 -4.0925 -5.6768
27 1 -1.0886 -3.4560 -5.9720
28 1 0.7156 -4.7922 -6.8894
29 1 0.0565 -5.0722 -4.5728
30 1 -0.3633 0.5137 0.8899
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3632 -1.0277 -0.0005
33 1 2.2491 -1.6318 1.1525
34 1 1.4714 1.8647 1.5768
35 1 1.6957 3.0958 3.6970
36 1 2.8719 -1.6967 3.4867
37 1 4.0672 -0.3250 7.7015
38 1 4.9609 0.3801 6.3336
39 1 2.1304 3.7558 7.1956
40 1 2.2844 4.0924 5.4543
41 1 0.8289 3.2801 6.0787
42 1 -0.1838 0.6426 -2.6225
43 1 1.0272 1.5997 -1.7359
44 1 1.1217 1.4667 -3.5084
45 1 2.3165 -0.2211 -4.4612
46 1 3.1559 -1.4076 -3.4336
47 1 2.7243 -3.1583 -6.6447
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000541861447.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:46
Heat of formation + Delta-G solvation = -51.010542 kcal
Electronic energy + Delta-G solvation = -30207.760308 eV
Core-core repulsion = 25970.868450 eV
Total energy + Delta-G solvation = -4236.891858 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.68940 -39.88998 -39.05575 -38.05740 -36.51457 -35.09786 -34.68290 -32.75949
-31.36926 -30.63656 -29.51564 -28.31565 -27.56579 -26.34407 -26.18811 -24.25890
-23.30351 -22.64148 -21.94696 -19.74056 -19.18680 -18.79746 -17.58655 -17.48645
-16.99427 -16.60688 -16.23918 -15.96260 -15.47600 -15.25890 -15.03673 -14.88913
-14.73505 -14.45991 -14.23576 -14.03307 -13.82291 -13.61849 -13.48237 -13.05390
-12.90841 -12.65796 -12.53779 -12.32146 -12.19786 -12.07913 -11.89679 -11.59145
-11.48298 -11.34796 -11.26459 -10.93243 -10.86152 -10.62884 -10.27948 -10.22928
-9.73824 -9.40318 -9.05441 -8.71570 -8.50348 -7.81221 -7.25297 -6.11604
-4.16849 1.02280 1.11165 2.05873 2.29374 2.83694 3.16177 3.26966
3.31952 3.34752 3.37026 3.56872 3.71803 3.89715 4.37912 4.44296
4.58274 4.72687 4.78240 4.81388 4.93338 4.96964 5.00531 5.04519
5.13250 5.16675 5.23222 5.34184 5.42001 5.46286 5.59772 5.67210
5.73581 5.80467 5.85514 6.02732 6.06299 6.10090 6.22375 6.25118
6.64628 6.86658 7.06647 7.19358 7.31757 7.39576 7.45418 7.69294
7.83479 8.13588 8.22863 8.75614 8.91060 9.48324 10.96512
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.026015 B = 0.002023 C = 0.001952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1076.039087 B =13836.137643 C =14342.869370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.130 3.870
3 H 0.099 0.901
4 N -0.717 5.717
5 C 0.246 3.754
6 C -0.197 4.197
7 C -0.065 4.065
8 C 0.019 3.981
9 C 0.131 3.869
10 C -0.188 4.188
11 O -0.303 6.303
12 C 0.054 3.946
13 C 0.485 3.515
14 O -0.525 6.525
15 N -0.546 5.546
16 C 0.076 3.924
17 C 0.501 3.499
18 O -0.536 6.536
19 N -0.595 5.595
20 C 0.080 3.920
21 C 0.246 3.754
22 C -0.528 4.528
23 H 0.057 0.943
24 C 0.061 3.939
25 N -0.894 5.894
26 Si 0.899 3.101
27 H -0.277 1.277
28 H -0.286 1.286
29 H -0.276 1.276
30 H 0.065 0.935
31 H 0.083 0.917
32 H 0.065 0.935
33 H 0.413 0.587
34 H 0.132 0.868
35 H 0.131 0.869
36 H 0.139 0.861
37 H 0.143 0.857
38 H 0.098 0.902
39 H 0.092 0.908
40 H 0.069 0.931
41 H 0.070 0.930
42 H 0.057 0.943
43 H 0.058 0.942
44 H 0.070 0.930
45 H 0.034 0.966
46 H 0.044 0.956
47 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.199 12.685 20.170 23.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.020 3.980
3 H 0.117 0.883
4 N -0.346 5.346
5 C 0.139 3.861
6 C -0.221 4.221
7 C -0.086 4.086
8 C -0.076 4.076
9 C 0.084 3.916
10 C -0.212 4.212
11 O -0.218 6.218
12 C -0.024 4.024
13 C 0.273 3.727
14 O -0.401 6.401
15 N -0.272 5.272
16 C -0.065 4.065
17 C 0.286 3.714
18 O -0.413 6.413
19 N -0.327 5.327
20 C -0.064 4.064
21 C 0.127 3.873
22 C -0.567 4.567
23 H 0.075 0.925
24 C -0.141 4.141
25 N -0.533 5.533
26 Si 0.726 3.274
27 H -0.202 1.202
28 H -0.211 1.211
29 H -0.202 1.202
30 H 0.084 0.916
31 H 0.102 0.898
32 H 0.084 0.916
33 H 0.251 0.749
34 H 0.150 0.850
35 H 0.149 0.851
36 H 0.157 0.843
37 H 0.160 0.840
38 H 0.116 0.884
39 H 0.110 0.890
40 H 0.087 0.913
41 H 0.088 0.912
42 H 0.075 0.925
43 H 0.076 0.924
44 H 0.089 0.911
45 H 0.052 0.948
46 H 0.062 0.938
47 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -1.751 12.334 20.533 24.017
hybrid contribution -0.622 -0.790 -0.497 1.122
sum -2.373 11.544 20.036 23.245
Atomic orbital electron populations
1.22469 0.93620 1.03915 1.03413 1.20804 0.95244 0.97106 0.84831
0.88325 1.44591 1.71252 1.13256 1.05551 1.17479 0.92051 0.91012
0.85557 1.20516 1.10130 0.92939 0.98467 1.20325 0.98781 0.99380
0.90131 1.17757 1.11615 0.91279 0.86949 1.18171 0.97926 0.88815
0.86645 1.19781 1.11135 1.01486 0.88801 1.86216 1.67863 1.37620
1.30052 1.23152 0.94788 0.88930 0.95552 1.21511 0.79434 0.87904
0.83808 1.90749 1.61009 1.64071 1.24255 1.45384 1.48720 1.20595
1.12496 1.21823 0.97795 0.82931 1.03979 1.20219 0.81481 0.85181
0.84492 1.90678 1.38502 1.26163 1.85949 1.48091 1.49478 1.28026
1.07127 1.21851 0.95261 0.87499 1.01797 1.19354 0.96099 0.92001
0.79876 1.21348 1.05945 1.18073 1.11334 0.92492 1.24936 0.95620
0.97294 0.96237 1.69911 1.24810 1.40207 1.18342 0.86551 0.81131
0.81729 0.77961 1.20214 1.21141 1.20172 0.91561 0.89832 0.91570
0.74921 0.85009 0.85128 0.84326 0.83958 0.88399 0.88972 0.91272
0.91184 0.92496 0.92380 0.91139 0.94780 0.93787 0.92573
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.98 9.07 37.16 0.34 -1.64 16
2 C 0.13 1.69 1.87 -69.08 -0.13 1.56 16
3 H 0.10 1.08 5.73 -51.93 -0.30 0.78 16
4 N -0.72 -9.25 5.13 -53.24 -0.27 -9.53 16
5 C 0.25 2.79 6.64 -83.70 -0.56 2.24 16
6 C -0.20 -1.91 8.86 -39.34 -0.35 -2.26 16
7 C -0.07 -0.58 9.37 -39.49 -0.37 -0.95 16
8 C 0.02 0.19 6.40 -83.37 -0.53 -0.34 16
9 C 0.13 1.47 6.44 -39.11 -0.25 1.22 16
10 C -0.19 -2.13 9.84 -39.30 -0.39 -2.51 16
11 O -0.30 -3.26 10.45 -19.72 -0.21 -3.46 16
12 C 0.05 0.45 7.17 36.03 0.26 0.71 16
13 C 0.49 5.27 7.67 -10.82 -0.08 5.19 16
14 O -0.52 -6.95 16.51 5.53 0.09 -6.86 16
15 N -0.55 -5.48 3.13 -120.49 -0.38 -5.86 16
16 C 0.08 0.56 9.71 59.85 0.58 1.14 16
17 C 0.50 9.42 7.14 -10.99 -0.08 9.34 16
18 O -0.54 -12.43 15.42 5.56 0.09 -12.34 16
19 N -0.60 -11.49 2.86 -182.95 -0.52 -12.01 16
20 C 0.08 1.09 8.85 59.85 0.53 1.62 16
21 C 0.25 6.10 5.20 -5.19 -0.03 6.07 16
22 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16
23 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16
24 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
25 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16
26 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16
27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
30 H 0.07 0.62 7.74 -51.93 -0.40 0.22 16
31 H 0.08 0.87 4.53 -51.93 -0.24 0.63 16
32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.41 5.84 7.80 -40.82 -0.32 5.53 16
34 H 0.13 1.08 6.11 -52.48 -0.32 0.76 16
35 H 0.13 0.85 6.79 -52.49 -0.36 0.49 16
36 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16
37 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16
38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16
39 H 0.09 0.74 6.96 -51.93 -0.36 0.38 16
40 H 0.07 0.38 7.49 -51.93 -0.39 0.00 16
41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
42 H 0.06 0.74 6.95 -51.93 -0.36 0.38 16
43 H 0.06 0.58 6.01 -51.93 -0.31 0.26 16
44 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16
45 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16
46 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16
47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
LS Contribution 382.76 15.07 5.77 5.77
Total: -1.00 -34.37 382.76 -7.41 -41.78
By element:
Atomic # 1 Polarization: 9.32 SS G_CDS: -6.22 Total: 3.10 kcal
Atomic # 6 Polarization: 9.78 SS G_CDS: -1.48 Total: 8.30 kcal
Atomic # 7 Polarization: -52.11 SS G_CDS: -0.44 Total: -52.55 kcal
Atomic # 8 Polarization: -22.64 SS G_CDS: -0.03 Total: -22.67 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -34.37 -7.41 -41.78 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000541861447.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.231 kcal
(2) G-P(sol) polarization free energy of solvation -34.366 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.011 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds