Wall clock time and date at job start Wed Apr 1 2020 05:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47227 * 120.00200 * 2 1 3 5 5 C 1.39876 * 120.00122 * 275.00046 * 4 2 1 6 6 C 1.38897 * 119.94861 * 359.72789 * 5 4 2 7 7 C 1.38230 * 120.12043 * 179.76647 * 6 5 4 8 8 C 1.38507 * 119.90646 * 0.45454 * 7 6 5 9 9 C 1.39410 * 120.11016 * 359.82951 * 8 7 6 10 10 C 1.38343 * 119.93516 * 359.93659 * 9 8 7 11 11 O 1.35992 * 119.45245 * 179.90946 * 9 8 7 12 12 C 1.42988 * 116.73535 * 327.16490 * 11 9 8 13 13 C 1.50754 * 109.64484 * 46.48599 * 12 11 9 14 14 O 1.21309 * 120.13939 * 148.60758 * 13 12 11 15 15 N 1.35091 * 119.72424 * 328.63323 * 13 12 11 16 16 C 1.46505 * 120.51311 * 181.70641 * 15 13 12 17 17 C 1.50706 * 109.46913 * 240.00627 * 2 1 3 18 18 O 1.21281 * 119.99660 * 239.99632 * 17 2 1 19 19 N 1.34771 * 120.00094 * 59.99917 * 17 2 1 20 20 C 1.46501 * 120.00308 * 359.97438 * 19 17 2 21 21 C 1.46506 * 119.99594 * 179.97438 * 19 17 2 22 22 C 1.50699 * 109.46928 * 90.00049 * 21 19 17 23 23 H 1.08003 * 119.99963 * 0.02562 * 22 21 19 24 24 C 1.37873 * 119.99865 * 179.97438 * 22 21 19 25 25 N 1.31514 * 120.00518 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99987 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47000 * 60.00482 * 26 24 22 28 28 H 1.48506 * 109.47330 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47185 * 300.00291 * 26 24 22 30 30 H 1.08992 * 109.47310 * 299.99576 * 1 2 3 31 31 H 1.09003 * 109.47197 * 60.00227 * 1 2 3 32 32 H 1.09000 * 109.46579 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99902 * 95.00338 * 4 2 1 34 34 H 1.08005 * 119.93802 * 359.97438 * 6 5 4 35 35 H 1.07995 * 120.04303 * 180.24693 * 7 6 5 36 36 H 1.07998 * 120.08401 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.44334 * 166.53482 * 12 11 9 38 38 H 1.08996 * 109.44905 * 286.46580 * 12 11 9 39 39 H 1.09000 * 109.47521 * 359.97438 * 16 15 13 40 40 H 1.09004 * 109.46892 * 120.00199 * 16 15 13 41 41 H 1.08999 * 109.47001 * 239.99547 * 16 15 13 42 42 H 1.08999 * 109.46532 * 269.99942 * 20 19 17 43 43 H 1.09000 * 109.46877 * 29.99967 * 20 19 17 44 44 H 1.09000 * 109.47251 * 150.00072 * 20 19 17 45 45 H 1.09004 * 109.47073 * 209.99877 * 21 19 17 46 46 H 1.09000 * 109.47212 * 329.99960 * 21 19 17 47 47 H 0.96992 * 120.00316 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1520 0.0071 2.4010 6 6 1.8267 1.3561 2.4609 7 6 1.9528 2.0479 3.6510 8 6 2.4134 1.3963 4.7831 9 6 2.7463 0.0438 4.7248 10 6 2.6151 -0.6488 3.5344 11 8 3.1989 -0.5822 5.8440 12 6 3.9706 0.2055 6.7542 13 6 3.2850 1.5278 6.9873 14 8 3.3920 2.0891 8.0573 15 7 2.5505 2.0847 5.9997 16 6 1.9075 3.3866 6.1946 17 6 2.0323 -0.7103 -1.2306 18 8 2.7296 -1.6964 -1.1194 19 7 1.7067 -0.2498 -2.4546 20 6 0.8640 0.9411 -2.5890 21 6 2.1956 -0.9400 -3.6508 22 6 1.2034 -1.9974 -4.0613 23 1 0.2989 -2.1407 -3.4886 24 6 1.4497 -2.7813 -5.1684 25 7 2.5508 -2.6066 -5.8661 26 14 0.2202 -4.0925 -5.6768 27 1 -1.0886 -3.4560 -5.9720 28 1 0.7156 -4.7922 -6.8894 29 1 0.0565 -5.0722 -4.5728 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1525 34 1 1.4714 1.8647 1.5768 35 1 1.6957 3.0958 3.6970 36 1 2.8719 -1.6967 3.4867 37 1 4.0672 -0.3250 7.7015 38 1 4.9609 0.3801 6.3336 39 1 2.1304 3.7558 7.1956 40 1 2.2844 4.0924 5.4543 41 1 0.8289 3.2801 6.0787 42 1 -0.1838 0.6426 -2.6225 43 1 1.0272 1.5997 -1.7359 44 1 1.1217 1.4667 -3.5084 45 1 2.3165 -0.2211 -4.4612 46 1 3.1559 -1.4076 -3.4336 47 1 2.7243 -3.1583 -6.6447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541861447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:46 Heat of formation + Delta-G solvation = -51.010542 kcal Electronic energy + Delta-G solvation = -30207.760308 eV Core-core repulsion = 25970.868450 eV Total energy + Delta-G solvation = -4236.891858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68940 -39.88998 -39.05575 -38.05740 -36.51457 -35.09786 -34.68290 -32.75949 -31.36926 -30.63656 -29.51564 -28.31565 -27.56579 -26.34407 -26.18811 -24.25890 -23.30351 -22.64148 -21.94696 -19.74056 -19.18680 -18.79746 -17.58655 -17.48645 -16.99427 -16.60688 -16.23918 -15.96260 -15.47600 -15.25890 -15.03673 -14.88913 -14.73505 -14.45991 -14.23576 -14.03307 -13.82291 -13.61849 -13.48237 -13.05390 -12.90841 -12.65796 -12.53779 -12.32146 -12.19786 -12.07913 -11.89679 -11.59145 -11.48298 -11.34796 -11.26459 -10.93243 -10.86152 -10.62884 -10.27948 -10.22928 -9.73824 -9.40318 -9.05441 -8.71570 -8.50348 -7.81221 -7.25297 -6.11604 -4.16849 1.02280 1.11165 2.05873 2.29374 2.83694 3.16177 3.26966 3.31952 3.34752 3.37026 3.56872 3.71803 3.89715 4.37912 4.44296 4.58274 4.72687 4.78240 4.81388 4.93338 4.96964 5.00531 5.04519 5.13250 5.16675 5.23222 5.34184 5.42001 5.46286 5.59772 5.67210 5.73581 5.80467 5.85514 6.02732 6.06299 6.10090 6.22375 6.25118 6.64628 6.86658 7.06647 7.19358 7.31757 7.39576 7.45418 7.69294 7.83479 8.13588 8.22863 8.75614 8.91060 9.48324 10.96512 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.002023 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.039087 B =13836.137643 C =14342.869370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.130 3.870 3 H 0.099 0.901 4 N -0.717 5.717 5 C 0.246 3.754 6 C -0.197 4.197 7 C -0.065 4.065 8 C 0.019 3.981 9 C 0.131 3.869 10 C -0.188 4.188 11 O -0.303 6.303 12 C 0.054 3.946 13 C 0.485 3.515 14 O -0.525 6.525 15 N -0.546 5.546 16 C 0.076 3.924 17 C 0.501 3.499 18 O -0.536 6.536 19 N -0.595 5.595 20 C 0.080 3.920 21 C 0.246 3.754 22 C -0.528 4.528 23 H 0.057 0.943 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.413 0.587 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.044 0.956 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 12.685 20.170 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 H 0.117 0.883 4 N -0.346 5.346 5 C 0.139 3.861 6 C -0.221 4.221 7 C -0.086 4.086 8 C -0.076 4.076 9 C 0.084 3.916 10 C -0.212 4.212 11 O -0.218 6.218 12 C -0.024 4.024 13 C 0.273 3.727 14 O -0.401 6.401 15 N -0.272 5.272 16 C -0.065 4.065 17 C 0.286 3.714 18 O -0.413 6.413 19 N -0.327 5.327 20 C -0.064 4.064 21 C 0.127 3.873 22 C -0.567 4.567 23 H 0.075 0.925 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.202 1.202 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.251 0.749 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.751 12.334 20.533 24.017 hybrid contribution -0.622 -0.790 -0.497 1.122 sum -2.373 11.544 20.036 23.245 Atomic orbital electron populations 1.22469 0.93620 1.03915 1.03413 1.20804 0.95244 0.97106 0.84831 0.88325 1.44591 1.71252 1.13256 1.05551 1.17479 0.92051 0.91012 0.85557 1.20516 1.10130 0.92939 0.98467 1.20325 0.98781 0.99380 0.90131 1.17757 1.11615 0.91279 0.86949 1.18171 0.97926 0.88815 0.86645 1.19781 1.11135 1.01486 0.88801 1.86216 1.67863 1.37620 1.30052 1.23152 0.94788 0.88930 0.95552 1.21511 0.79434 0.87904 0.83808 1.90749 1.61009 1.64071 1.24255 1.45384 1.48720 1.20595 1.12496 1.21823 0.97795 0.82931 1.03979 1.20219 0.81481 0.85181 0.84492 1.90678 1.38502 1.26163 1.85949 1.48091 1.49478 1.28026 1.07127 1.21851 0.95261 0.87499 1.01797 1.19354 0.96099 0.92001 0.79876 1.21348 1.05945 1.18073 1.11334 0.92492 1.24936 0.95620 0.97294 0.96237 1.69911 1.24810 1.40207 1.18342 0.86551 0.81131 0.81729 0.77961 1.20214 1.21141 1.20172 0.91561 0.89832 0.91570 0.74921 0.85009 0.85128 0.84326 0.83958 0.88399 0.88972 0.91272 0.91184 0.92496 0.92380 0.91139 0.94780 0.93787 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 9.07 37.16 0.34 -1.64 16 2 C 0.13 1.69 1.87 -69.08 -0.13 1.56 16 3 H 0.10 1.08 5.73 -51.93 -0.30 0.78 16 4 N -0.72 -9.25 5.13 -53.24 -0.27 -9.53 16 5 C 0.25 2.79 6.64 -83.70 -0.56 2.24 16 6 C -0.20 -1.91 8.86 -39.34 -0.35 -2.26 16 7 C -0.07 -0.58 9.37 -39.49 -0.37 -0.95 16 8 C 0.02 0.19 6.40 -83.37 -0.53 -0.34 16 9 C 0.13 1.47 6.44 -39.11 -0.25 1.22 16 10 C -0.19 -2.13 9.84 -39.30 -0.39 -2.51 16 11 O -0.30 -3.26 10.45 -19.72 -0.21 -3.46 16 12 C 0.05 0.45 7.17 36.03 0.26 0.71 16 13 C 0.49 5.27 7.67 -10.82 -0.08 5.19 16 14 O -0.52 -6.95 16.51 5.53 0.09 -6.86 16 15 N -0.55 -5.48 3.13 -120.49 -0.38 -5.86 16 16 C 0.08 0.56 9.71 59.85 0.58 1.14 16 17 C 0.50 9.42 7.14 -10.99 -0.08 9.34 16 18 O -0.54 -12.43 15.42 5.56 0.09 -12.34 16 19 N -0.60 -11.49 2.86 -182.95 -0.52 -12.01 16 20 C 0.08 1.09 8.85 59.85 0.53 1.62 16 21 C 0.25 6.10 5.20 -5.19 -0.03 6.07 16 22 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 23 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 24 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 25 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 26 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 H 0.07 0.62 7.74 -51.93 -0.40 0.22 16 31 H 0.08 0.87 4.53 -51.93 -0.24 0.63 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.41 5.84 7.80 -40.82 -0.32 5.53 16 34 H 0.13 1.08 6.11 -52.48 -0.32 0.76 16 35 H 0.13 0.85 6.79 -52.49 -0.36 0.49 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.74 6.96 -51.93 -0.36 0.38 16 40 H 0.07 0.38 7.49 -51.93 -0.39 0.00 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.74 6.95 -51.93 -0.36 0.38 16 43 H 0.06 0.58 6.01 -51.93 -0.31 0.26 16 44 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 45 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 46 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -34.37 382.76 -7.41 -41.78 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.22 Total: 3.10 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.48 Total: 8.30 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.44 Total: -52.55 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.03 Total: -22.67 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.37 -7.41 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541861447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.231 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds