Wall clock time and date at job start Wed Apr 1 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47227 * 120.00200 * 2 1 3 5 5 C 1.39876 * 120.00122 * 275.00046 * 4 2 1 6 6 C 1.38897 * 119.94861 * 359.72789 * 5 4 2 7 7 C 1.38230 * 120.12043 * 179.76647 * 6 5 4 8 8 C 1.38507 * 119.90646 * 0.45454 * 7 6 5 9 9 C 1.39410 * 120.11016 * 359.82951 * 8 7 6 10 10 C 1.38343 * 119.93516 * 359.93659 * 9 8 7 11 11 O 1.35992 * 119.45245 * 179.90946 * 9 8 7 12 12 C 1.42988 * 116.73535 * 327.16490 * 11 9 8 13 13 C 1.50754 * 109.64484 * 46.48599 * 12 11 9 14 14 O 1.21309 * 120.13939 * 148.60758 * 13 12 11 15 15 N 1.35091 * 119.72424 * 328.63323 * 13 12 11 16 16 C 1.46505 * 120.51311 * 181.70641 * 15 13 12 17 17 C 1.50706 * 109.46913 * 240.00627 * 2 1 3 18 18 O 1.21281 * 119.99660 * 239.99632 * 17 2 1 19 19 N 1.34771 * 120.00094 * 59.99917 * 17 2 1 20 20 C 1.46501 * 120.00308 * 359.97438 * 19 17 2 21 21 C 1.46506 * 119.99594 * 179.97438 * 19 17 2 22 22 C 1.50699 * 109.46928 * 90.00049 * 21 19 17 23 23 H 1.08003 * 119.99963 * 0.02562 * 22 21 19 24 24 C 1.37873 * 119.99865 * 179.97438 * 22 21 19 25 25 N 1.31514 * 120.00518 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99987 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47000 * 60.00482 * 26 24 22 28 28 H 1.48506 * 109.47330 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47185 * 300.00291 * 26 24 22 30 30 H 1.08992 * 109.47310 * 299.99576 * 1 2 3 31 31 H 1.09003 * 109.47197 * 60.00227 * 1 2 3 32 32 H 1.09000 * 109.46579 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99902 * 95.00338 * 4 2 1 34 34 H 1.08005 * 119.93802 * 359.97438 * 6 5 4 35 35 H 1.07995 * 120.04303 * 180.24693 * 7 6 5 36 36 H 1.07998 * 120.08401 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.44334 * 166.53482 * 12 11 9 38 38 H 1.08996 * 109.44905 * 286.46580 * 12 11 9 39 39 H 1.09000 * 109.47521 * 359.97438 * 16 15 13 40 40 H 1.09004 * 109.46892 * 120.00199 * 16 15 13 41 41 H 1.08999 * 109.47001 * 239.99547 * 16 15 13 42 42 H 1.08999 * 109.46532 * 269.99942 * 20 19 17 43 43 H 1.09000 * 109.46877 * 29.99967 * 20 19 17 44 44 H 1.09000 * 109.47251 * 150.00072 * 20 19 17 45 45 H 1.09004 * 109.47073 * 209.99877 * 21 19 17 46 46 H 1.09000 * 109.47212 * 329.99960 * 21 19 17 47 47 H 0.96992 * 120.00316 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1520 0.0071 2.4010 6 6 1.8267 1.3561 2.4609 7 6 1.9528 2.0479 3.6510 8 6 2.4134 1.3963 4.7831 9 6 2.7463 0.0438 4.7248 10 6 2.6151 -0.6488 3.5344 11 8 3.1989 -0.5822 5.8440 12 6 3.9706 0.2055 6.7542 13 6 3.2850 1.5278 6.9873 14 8 3.3920 2.0891 8.0573 15 7 2.5505 2.0847 5.9997 16 6 1.9075 3.3866 6.1946 17 6 2.0323 -0.7103 -1.2306 18 8 2.7296 -1.6964 -1.1194 19 7 1.7067 -0.2498 -2.4546 20 6 0.8640 0.9411 -2.5890 21 6 2.1956 -0.9400 -3.6508 22 6 1.2034 -1.9974 -4.0613 23 1 0.2989 -2.1407 -3.4886 24 6 1.4497 -2.7813 -5.1684 25 7 2.5508 -2.6066 -5.8661 26 14 0.2202 -4.0925 -5.6768 27 1 -1.0886 -3.4560 -5.9720 28 1 0.7156 -4.7922 -6.8894 29 1 0.0565 -5.0722 -4.5728 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1525 34 1 1.4714 1.8647 1.5768 35 1 1.6957 3.0958 3.6970 36 1 2.8719 -1.6967 3.4867 37 1 4.0672 -0.3250 7.7015 38 1 4.9609 0.3801 6.3336 39 1 2.1304 3.7558 7.1956 40 1 2.2844 4.0924 5.4543 41 1 0.8289 3.2801 6.0787 42 1 -0.1838 0.6426 -2.6225 43 1 1.0272 1.5997 -1.7359 44 1 1.1217 1.4667 -3.5084 45 1 2.3165 -0.2211 -4.4612 46 1 3.1559 -1.4076 -3.4336 47 1 2.7243 -3.1583 -6.6447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541861447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:45 Heat of formation + Delta-G solvation = -75.184358 kcal Electronic energy + Delta-G solvation = -30208.808563 eV Core-core repulsion = 25970.868450 eV Total energy + Delta-G solvation = -4237.940113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.45890 -41.14748 -40.01222 -38.92639 -37.39274 -36.68425 -35.67803 -34.69624 -32.33619 -31.49461 -30.20778 -29.67178 -28.79896 -27.57771 -26.94479 -25.69242 -24.51824 -23.42936 -23.14701 -20.64276 -20.08715 -19.93177 -18.68180 -18.54344 -18.30037 -17.92252 -17.41709 -16.86984 -16.65326 -16.47565 -16.13825 -16.01502 -15.77089 -15.59432 -15.28883 -14.96630 -14.64249 -14.58649 -14.39384 -14.30764 -14.05654 -13.79896 -13.47422 -13.42632 -13.31606 -13.15776 -13.06282 -13.02016 -12.79194 -12.56281 -12.37704 -12.32967 -12.20857 -12.08431 -11.69358 -11.66063 -11.09012 -10.63924 -10.61643 -10.12222 -9.52533 -9.44052 -8.22280 -8.09883 -6.36429 0.22189 0.34849 1.26925 1.37257 1.41001 1.47971 1.58907 1.73252 1.95729 2.31453 2.41512 2.67090 2.82459 2.99075 3.07837 3.56576 3.71918 3.96266 3.98537 4.11280 4.16230 4.20376 4.23885 4.35498 4.38445 4.44342 4.53073 4.67420 4.72860 4.77636 4.80842 4.83599 4.92550 4.98370 5.02857 5.13388 5.22016 5.29679 5.32625 5.35310 5.50914 5.55698 5.81585 5.88383 6.05714 6.22538 6.34909 6.62856 6.68953 6.70927 6.78332 7.26661 7.41891 8.84572 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.002023 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.039087 B =13836.137643 C =14342.869370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 H 0.132 0.868 4 N -0.728 5.728 5 C 0.234 3.766 6 C -0.192 4.192 7 C -0.055 4.055 8 C 0.013 3.987 9 C 0.118 3.882 10 C -0.201 4.201 11 O -0.316 6.316 12 C 0.052 3.948 13 C 0.478 3.522 14 O -0.556 6.556 15 N -0.548 5.548 16 C 0.070 3.930 17 C 0.490 3.510 18 O -0.593 6.593 19 N -0.602 5.602 20 C 0.071 3.929 21 C 0.259 3.741 22 C -0.540 4.540 23 H 0.055 0.945 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.965 3.035 27 H -0.259 1.259 28 H -0.281 1.281 29 H -0.279 1.279 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.402 0.598 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.162 0.838 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.027 0.973 46 H -0.003 1.003 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 14.883 20.843 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.038 3.962 3 H 0.149 0.851 4 N -0.357 5.357 5 C 0.129 3.871 6 C -0.215 4.215 7 C -0.076 4.076 8 C -0.081 4.081 9 C 0.071 3.929 10 C -0.224 4.224 11 O -0.231 6.231 12 C -0.025 4.025 13 C 0.267 3.733 14 O -0.435 6.435 15 N -0.273 5.273 16 C -0.071 4.071 17 C 0.278 3.722 18 O -0.474 6.474 19 N -0.333 5.333 20 C -0.071 4.071 21 C 0.137 3.863 22 C -0.578 4.578 23 H 0.073 0.927 24 C -0.192 4.192 25 N -0.568 5.568 26 Si 0.789 3.211 27 H -0.183 1.183 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.238 0.762 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.150 0.850 37 H 0.180 0.820 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.045 0.955 46 H 0.015 0.985 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.814 14.601 21.219 26.039 hybrid contribution 0.052 -1.429 -0.646 1.570 sum -3.762 13.172 20.573 24.716 Atomic orbital electron populations 1.22469 0.91717 1.03118 1.05456 1.20774 0.96327 0.97344 0.81804 0.85081 1.44614 1.72156 1.12892 1.06051 1.17612 0.92871 0.91823 0.84770 1.20785 1.09160 0.91962 0.99564 1.20645 0.97211 1.00675 0.89033 1.17939 1.11588 0.91044 0.87569 1.18311 0.98439 0.89466 0.86690 1.19828 1.11744 1.01513 0.89340 1.86195 1.68294 1.38359 1.30211 1.23366 0.94920 0.88084 0.96137 1.21893 0.79418 0.88429 0.83538 1.90731 1.62307 1.65066 1.25366 1.45545 1.48360 1.21280 1.12164 1.22031 0.98643 0.82175 1.04208 1.21331 0.80303 0.84708 0.85844 1.90645 1.40934 1.28898 1.86900 1.48068 1.50081 1.29298 1.05812 1.22221 0.94742 0.85922 1.04191 1.18798 0.93824 0.91719 0.81935 1.21657 1.06143 1.18767 1.11282 0.92687 1.25840 0.97467 0.99527 0.96389 1.70034 1.26574 1.41340 1.18855 0.85512 0.79386 0.78791 0.77389 1.18338 1.20612 1.20467 0.88649 0.88492 0.93883 0.76194 0.82673 0.81990 0.84962 0.82048 0.86655 0.90008 0.88957 0.89738 0.91380 0.87604 0.90956 0.95478 0.98537 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 9.07 71.98 0.65 -2.60 16 2 C 0.15 3.49 1.87 44.25 0.08 3.57 16 3 H 0.13 2.27 5.73 -2.39 -0.01 2.26 16 4 N -0.73 -18.10 5.13 -322.35 -1.65 -19.76 16 5 C 0.23 4.91 6.64 38.17 0.25 5.16 16 6 C -0.19 -2.96 8.86 22.43 0.20 -2.76 16 7 C -0.06 -0.76 9.37 22.33 0.21 -0.56 16 8 C 0.01 0.24 6.40 38.10 0.24 0.48 16 9 C 0.12 2.52 6.44 22.58 0.15 2.66 16 10 C -0.20 -4.44 9.84 22.45 0.22 -4.22 16 11 O -0.32 -6.61 10.45 -93.46 -0.98 -7.59 16 12 C 0.05 0.83 7.17 71.25 0.51 1.34 16 13 C 0.48 9.90 7.67 87.62 0.67 10.58 16 14 O -0.56 -14.48 16.51 -3.12 -0.05 -14.53 16 15 N -0.55 -9.91 3.13 -653.32 -2.04 -11.96 16 16 C 0.07 0.85 9.71 127.77 1.24 2.09 16 17 C 0.49 18.42 7.14 87.66 0.63 19.05 16 18 O -0.59 -28.77 15.42 -3.03 -0.05 -28.81 16 19 N -0.60 -23.07 2.86 -851.11 -2.43 -25.50 16 20 C 0.07 1.74 8.85 127.77 1.13 2.87 16 21 C 0.26 13.29 5.20 85.63 0.45 13.74 16 22 C -0.54 -29.95 9.39 25.60 0.24 -29.71 16 23 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 24 C 0.01 0.38 5.46 84.65 0.46 0.84 16 25 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 26 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 29 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 30 H 0.09 1.32 7.74 -2.39 -0.02 1.30 16 31 H 0.10 1.60 4.53 -2.39 -0.01 1.59 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.40 11.75 7.80 -92.71 -0.72 11.02 16 34 H 0.16 1.64 6.11 -2.91 -0.02 1.62 16 35 H 0.16 1.22 6.79 -2.91 -0.02 1.20 16 36 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.16 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.19 6.96 -2.39 -0.02 1.18 16 40 H 0.09 0.68 7.49 -2.38 -0.02 0.67 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 1.55 6.95 -2.39 -0.02 1.54 16 43 H 0.11 1.58 6.01 -2.39 -0.01 1.57 16 44 H 0.07 1.77 7.89 -2.39 -0.02 1.75 16 45 H 0.03 1.41 7.89 -2.38 -0.02 1.39 16 46 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 47 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -79.36 382.76 2.75 -76.61 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.30 Total: 17.88 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.33 Total: 22.55 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -5.84 Total: -112.01 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -1.07 Total: -50.93 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -79.36 2.75 -76.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541861447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.426 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds