Wall clock time and date at job start Wed Apr 1 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47080 * 2 1 4 4 C 1.52999 * 109.47064 * 239.99419 * 2 1 3 5 5 O 1.42899 * 109.46889 * 65.00303 * 4 2 1 6 6 C 1.42905 * 113.99778 * 179.97438 * 5 4 2 7 7 C 1.54267 * 110.03280 * 267.90818 * 6 5 4 8 8 C 1.54963 * 104.16043 * 217.13520 * 7 6 5 9 9 C 1.54899 * 102.77557 * 37.89144 * 8 7 6 10 10 C 1.53874 * 110.03078 * 150.69141 * 6 5 4 11 11 C 1.52999 * 109.46441 * 119.99635 * 2 1 3 12 12 S 1.81392 * 109.47592 * 294.99454 * 11 2 1 13 13 O 1.42098 * 110.54483 * 291.63337 * 12 11 2 14 14 O 1.42110 * 110.53993 * 68.37910 * 12 11 2 15 15 N 1.65598 * 104.45437 * 180.02562 * 12 11 2 16 16 C 1.47067 * 136.06286 * 269.63830 * 15 12 11 17 17 C 1.53236 * 88.08624 * 207.19994 * 16 15 12 18 18 O 1.42895 * 114.19926 * 87.71907 * 17 16 15 19 19 C 1.50701 * 114.32866 * 220.47113 * 17 16 15 20 20 H 1.07998 * 120.00022 * 93.74739 * 19 17 16 21 21 C 1.37876 * 119.99415 * 273.75849 * 19 17 16 22 22 N 1.31517 * 120.00340 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99560 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47015 * 89.99820 * 23 21 19 25 25 H 1.48497 * 109.47116 * 209.99918 * 23 21 19 26 26 H 1.48499 * 109.47575 * 329.99898 * 23 21 19 27 27 C 1.47068 * 136.05393 * 89.99998 * 15 12 11 28 28 H 1.08998 * 109.47633 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47201 * 300.00469 * 1 2 3 30 30 H 1.09004 * 109.46694 * 60.00272 * 1 2 3 31 31 H 1.08997 * 109.47286 * 305.00286 * 4 2 1 32 32 H 1.08997 * 109.46848 * 185.00384 * 4 2 1 33 33 H 1.08997 * 110.01744 * 29.30612 * 6 5 4 34 34 H 1.08996 * 110.48851 * 335.78541 * 7 6 5 35 35 H 1.08998 * 110.48334 * 98.42978 * 7 6 5 36 36 H 1.08998 * 110.72372 * 279.58140 * 8 7 6 37 37 H 1.08998 * 110.92501 * 156.29259 * 8 7 6 38 38 H 1.09000 * 110.48504 * 203.40596 * 9 8 7 39 39 H 1.08998 * 110.59922 * 80.81297 * 9 8 7 40 40 H 1.08994 * 110.03363 * 238.57106 * 10 6 5 41 41 H 1.09007 * 110.03146 * 359.95133 * 10 6 5 42 42 H 1.09006 * 109.47515 * 55.00448 * 11 2 1 43 43 H 1.09009 * 109.46880 * 174.99967 * 11 2 1 44 44 H 1.08999 * 113.46156 * 321.93004 * 16 15 12 45 45 H 1.08995 * 113.46995 * 92.36442 * 16 15 12 46 46 H 0.96707 * 113.99510 * 86.30898 * 18 17 16 47 47 H 0.97002 * 119.99635 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.47164 * 267.62960 * 27 15 12 49 49 H 1.09002 * 113.46823 * 38.01113 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 1.6620 0.0166 -2.4130 6 6 2.0924 -0.5742 -3.6410 7 6 3.4665 -0.0037 -4.0488 8 6 3.3868 0.1100 -5.5922 9 6 1.9247 0.5644 -5.8272 10 6 1.1125 -0.2135 -4.7713 11 6 2.0399 -0.7212 1.2493 12 16 1.5601 0.2157 2.7266 13 8 2.2659 1.4475 2.7869 14 8 0.1519 0.1685 2.9115 15 7 2.1681 -0.6651 3.9902 16 6 1.6828 -1.7518 4.8541 17 6 2.6334 -1.2419 5.9425 18 8 2.0741 -0.2290 6.7810 19 6 3.3376 -2.3300 6.7114 20 1 4.3178 -2.6618 6.4024 21 6 2.7303 -2.9020 7.8091 22 7 1.5367 -2.4977 8.1855 23 14 3.6029 -4.2512 8.7618 24 1 4.4217 -3.6444 9.8417 25 1 2.5967 -5.1662 9.3581 26 1 4.4839 -5.0158 7.8428 27 6 3.4289 -0.7004 4.7466 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7996 -1.2054 33 1 2.1548 -1.6569 -3.5324 34 1 3.6199 0.9783 -3.6015 35 1 4.2647 -0.6860 -3.7565 36 1 3.5706 -0.8571 -6.0602 37 1 4.0879 0.8571 -5.9642 38 1 1.5989 0.2968 -6.8323 39 1 1.8268 1.6384 -5.6686 40 1 0.7002 -1.1212 -5.2117 41 1 0.3082 0.4114 -4.3829 42 1 1.6053 -1.7198 1.2953 43 1 3.1263 -0.7995 1.2057 44 1 0.6301 -1.6574 5.1203 45 1 1.9375 -2.7456 4.4860 46 1 1.5736 -0.5734 7.5334 47 1 1.1097 -2.8999 8.9580 48 1 4.1536 -1.4113 4.3496 49 1 3.8584 0.2862 4.9207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549805289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:28 Heat of formation + Delta-G solvation = -147.621625 kcal Electronic energy + Delta-G solvation = -29106.963975 eV Core-core repulsion = 24969.033947 eV Total energy + Delta-G solvation = -4137.930028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.40815 -38.64252 -37.09778 -36.65491 -35.55201 -34.79250 -33.95735 -32.14149 -29.12503 -28.37835 -28.02569 -27.38806 -26.11643 -25.08830 -24.68062 -21.12708 -20.96310 -20.48858 -19.66773 -18.28082 -17.58150 -17.38484 -16.78087 -16.21146 -16.07202 -15.83207 -15.56672 -15.13348 -14.86317 -14.45797 -14.21331 -13.82858 -13.69745 -13.65127 -13.46778 -13.15061 -12.98677 -12.78744 -12.27176 -12.09824 -11.91865 -11.84253 -11.66953 -11.62952 -11.51872 -11.50839 -11.47794 -11.45606 -11.25148 -11.11080 -11.06295 -10.99407 -10.84189 -10.81510 -10.47237 -10.32219 -10.21695 -9.75614 -9.29370 -8.76242 -8.52879 -8.04569 -6.36421 -4.47336 0.57383 3.04308 3.15694 3.23850 3.25460 3.36962 4.18344 4.18735 4.21410 4.23969 4.29618 4.50780 4.54415 4.62857 4.76755 4.87095 4.88617 5.06363 5.07073 5.12894 5.16391 5.26464 5.29542 5.37603 5.44121 5.48875 5.51868 5.53211 5.57573 5.65206 5.74967 5.81433 5.83486 5.94166 5.97942 6.02073 6.07514 6.21089 6.29503 6.42457 6.66796 6.82778 7.00942 7.02447 7.49612 7.67824 7.86259 8.55914 9.23417 9.57460 10.69874 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002103 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.417173 B =13308.818287 C =13837.124062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.075 4.075 3 H 0.091 0.909 4 C 0.075 3.925 5 O -0.377 6.377 6 C 0.083 3.917 7 C -0.149 4.149 8 C -0.124 4.124 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.642 4.642 12 S 2.632 3.368 13 O -0.958 6.958 14 O -0.951 6.951 15 N -1.033 6.033 16 C 0.099 3.901 17 C 0.244 3.756 18 O -0.571 6.571 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.070 3.930 22 N -0.896 5.896 23 Si 0.909 3.091 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.126 3.874 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.394 0.606 47 H 0.274 0.726 48 H 0.081 0.919 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 0.111 -22.961 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.095 4.095 3 H 0.109 0.891 4 C -0.002 4.002 5 O -0.297 6.297 6 C 0.026 3.974 7 C -0.187 4.187 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.769 4.769 12 S 2.726 3.274 13 O -0.949 6.949 14 O -0.942 6.942 15 N -0.873 5.873 16 C -0.027 4.027 17 C 0.200 3.800 18 O -0.384 6.384 19 C -0.572 4.572 20 H 0.090 0.910 21 C -0.132 4.132 22 N -0.537 5.537 23 Si 0.736 3.264 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.196 1.196 27 C 0.001 3.999 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.250 0.750 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.046 1.572 -23.394 23.470 hybrid contribution 0.640 -2.108 0.390 2.237 sum 1.687 -0.536 -23.004 23.072 Atomic orbital electron populations 1.22233 0.93251 1.03563 1.04182 1.20746 0.97449 1.00052 0.91275 0.89116 1.22514 0.98572 0.94510 0.84628 1.87941 1.78280 1.50181 1.13281 1.22802 0.93544 0.96508 0.84588 1.22936 0.97088 1.02354 0.96339 1.22444 0.96902 1.01371 0.95412 1.22338 0.94937 1.00339 0.98483 1.22232 0.98444 1.00898 0.94608 1.30965 1.11799 1.15583 1.18520 1.04396 0.74317 0.74692 0.73975 1.93551 1.75083 1.40382 1.85879 1.93547 1.29427 1.86856 1.84368 1.59969 1.29341 1.52850 1.45144 1.23654 1.01288 0.88188 0.89533 1.19515 0.88735 0.85849 0.85928 1.86042 1.73423 1.35320 1.43609 1.21486 1.04207 1.18873 1.12661 0.90956 1.25104 0.94544 0.96918 0.96660 1.69281 1.14194 1.43235 1.26945 0.86321 0.79251 0.80904 0.79918 1.20284 1.20973 1.19640 1.22894 0.86043 1.00902 0.90083 0.91746 0.90558 0.90706 0.92869 0.93029 0.91973 0.90264 0.91557 0.91476 0.91297 0.91513 0.91287 0.91094 0.90219 0.85085 0.85264 0.91326 0.90628 0.74978 0.91555 0.90081 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.78 37.16 0.33 -1.88 16 2 C -0.08 -0.92 2.62 -90.62 -0.24 -1.16 16 3 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.08 0.79 5.16 37.16 0.19 0.98 16 5 O -0.38 -4.16 9.43 -35.23 -0.33 -4.49 16 6 C 0.08 0.72 3.38 -25.61 -0.09 0.64 16 7 C -0.15 -1.17 6.56 -25.03 -0.16 -1.33 16 8 C -0.12 -0.79 6.91 -24.69 -0.17 -0.96 16 9 C -0.12 -0.80 6.83 -25.07 -0.17 -0.98 16 10 C -0.12 -0.94 6.61 -25.61 -0.17 -1.11 16 11 C -0.64 -8.09 5.62 37.16 0.21 -7.88 16 12 S 2.63 47.21 5.61 -107.50 -0.60 46.61 16 13 O -0.96 -19.83 18.07 -57.54 -1.04 -20.87 16 14 O -0.95 -19.39 15.82 -57.54 -0.91 -20.30 16 15 N -1.03 -20.52 4.10 -125.33 -0.51 -21.04 16 16 C 0.10 2.13 8.10 -8.65 -0.07 2.06 16 17 C 0.24 5.85 1.57 -91.39 -0.14 5.71 16 18 O -0.57 -15.10 13.54 -35.23 -0.48 -15.58 16 19 C -0.53 -13.12 8.69 -34.44 -0.30 -13.42 16 20 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 21 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 22 N -0.90 -22.89 11.01 55.43 0.61 -22.28 16 23 Si 0.91 19.21 29.54 -169.99 -5.02 14.19 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 27 C 0.13 2.57 8.11 -8.51 -0.07 2.50 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.09 5.61 -51.93 -0.29 0.80 16 30 H 0.07 0.86 7.82 -51.93 -0.41 0.45 16 31 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 7.81 -51.93 -0.41 0.08 16 34 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 42 H 0.13 1.44 8.14 -51.92 -0.42 1.02 16 43 H 0.13 1.38 8.14 -51.92 -0.42 0.96 16 44 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 46 H 0.39 10.52 6.32 45.56 0.29 10.80 16 47 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 48 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 49 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -30.47 402.64 -11.12 -41.59 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.95 Total: 11.29 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.95 Total: -15.18 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.10 Total: -43.32 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -2.76 Total: -61.25 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.60 Total: 46.61 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.47 -11.12 -41.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549805289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.028 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds