Wall clock time and date at job start Wed Apr 1 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47080 * 2 1 4 4 C 1.52999 * 109.47064 * 239.99419 * 2 1 3 5 5 O 1.42899 * 109.46889 * 65.00303 * 4 2 1 6 6 C 1.42905 * 113.99778 * 179.97438 * 5 4 2 7 7 C 1.54267 * 110.03280 * 267.90818 * 6 5 4 8 8 C 1.54963 * 104.16043 * 217.13520 * 7 6 5 9 9 C 1.54899 * 102.77557 * 37.89144 * 8 7 6 10 10 C 1.53874 * 110.03078 * 150.69141 * 6 5 4 11 11 C 1.52999 * 109.46441 * 119.99635 * 2 1 3 12 12 S 1.81392 * 109.47592 * 294.99454 * 11 2 1 13 13 O 1.42098 * 110.54483 * 291.63337 * 12 11 2 14 14 O 1.42110 * 110.53993 * 68.37910 * 12 11 2 15 15 N 1.65598 * 104.45437 * 180.02562 * 12 11 2 16 16 C 1.47067 * 136.06286 * 269.63830 * 15 12 11 17 17 C 1.53236 * 88.08624 * 207.19994 * 16 15 12 18 18 O 1.42895 * 114.19926 * 87.71907 * 17 16 15 19 19 C 1.50701 * 114.32866 * 220.47113 * 17 16 15 20 20 H 1.07998 * 120.00022 * 93.74739 * 19 17 16 21 21 C 1.37876 * 119.99415 * 273.75849 * 19 17 16 22 22 N 1.31517 * 120.00340 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99560 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47015 * 89.99820 * 23 21 19 25 25 H 1.48497 * 109.47116 * 209.99918 * 23 21 19 26 26 H 1.48499 * 109.47575 * 329.99898 * 23 21 19 27 27 C 1.47068 * 136.05393 * 89.99998 * 15 12 11 28 28 H 1.08998 * 109.47633 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47201 * 300.00469 * 1 2 3 30 30 H 1.09004 * 109.46694 * 60.00272 * 1 2 3 31 31 H 1.08997 * 109.47286 * 305.00286 * 4 2 1 32 32 H 1.08997 * 109.46848 * 185.00384 * 4 2 1 33 33 H 1.08997 * 110.01744 * 29.30612 * 6 5 4 34 34 H 1.08996 * 110.48851 * 335.78541 * 7 6 5 35 35 H 1.08998 * 110.48334 * 98.42978 * 7 6 5 36 36 H 1.08998 * 110.72372 * 279.58140 * 8 7 6 37 37 H 1.08998 * 110.92501 * 156.29259 * 8 7 6 38 38 H 1.09000 * 110.48504 * 203.40596 * 9 8 7 39 39 H 1.08998 * 110.59922 * 80.81297 * 9 8 7 40 40 H 1.08994 * 110.03363 * 238.57106 * 10 6 5 41 41 H 1.09007 * 110.03146 * 359.95133 * 10 6 5 42 42 H 1.09006 * 109.47515 * 55.00448 * 11 2 1 43 43 H 1.09009 * 109.46880 * 174.99967 * 11 2 1 44 44 H 1.08999 * 113.46156 * 321.93004 * 16 15 12 45 45 H 1.08995 * 113.46995 * 92.36442 * 16 15 12 46 46 H 0.96707 * 113.99510 * 86.30898 * 18 17 16 47 47 H 0.97002 * 119.99635 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.47164 * 267.62960 * 27 15 12 49 49 H 1.09002 * 113.46823 * 38.01113 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 1.6620 0.0166 -2.4130 6 6 2.0924 -0.5742 -3.6410 7 6 3.4665 -0.0037 -4.0488 8 6 3.3868 0.1100 -5.5922 9 6 1.9247 0.5644 -5.8272 10 6 1.1125 -0.2135 -4.7713 11 6 2.0399 -0.7212 1.2493 12 16 1.5601 0.2157 2.7266 13 8 2.2659 1.4475 2.7869 14 8 0.1519 0.1685 2.9115 15 7 2.1681 -0.6651 3.9902 16 6 1.6828 -1.7518 4.8541 17 6 2.6334 -1.2419 5.9425 18 8 2.0741 -0.2290 6.7810 19 6 3.3376 -2.3300 6.7114 20 1 4.3178 -2.6618 6.4024 21 6 2.7303 -2.9020 7.8091 22 7 1.5367 -2.4977 8.1855 23 14 3.6029 -4.2512 8.7618 24 1 4.4217 -3.6444 9.8417 25 1 2.5967 -5.1662 9.3581 26 1 4.4839 -5.0158 7.8428 27 6 3.4289 -0.7004 4.7466 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7996 -1.2054 33 1 2.1548 -1.6569 -3.5324 34 1 3.6199 0.9783 -3.6015 35 1 4.2647 -0.6860 -3.7565 36 1 3.5706 -0.8571 -6.0602 37 1 4.0879 0.8571 -5.9642 38 1 1.5989 0.2968 -6.8323 39 1 1.8268 1.6384 -5.6686 40 1 0.7002 -1.1212 -5.2117 41 1 0.3082 0.4114 -4.3829 42 1 1.6053 -1.7198 1.2953 43 1 3.1263 -0.7995 1.2057 44 1 0.6301 -1.6574 5.1203 45 1 1.9375 -2.7456 4.4860 46 1 1.5736 -0.5734 7.5334 47 1 1.1097 -2.8999 8.9580 48 1 4.1536 -1.4113 4.3496 49 1 3.8584 0.2862 4.9207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549805289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:28 Heat of formation + Delta-G solvation = -169.714465 kcal Electronic energy + Delta-G solvation = -29107.921993 eV Core-core repulsion = 24969.033947 eV Total energy + Delta-G solvation = -4138.888046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.34626 -40.08129 -38.21645 -37.83568 -37.04365 -35.83542 -35.64724 -34.06463 -29.72491 -29.66868 -29.03696 -28.48355 -26.93097 -26.73700 -26.42277 -21.89579 -21.64607 -21.41883 -21.10765 -19.76657 -19.33729 -18.49083 -18.08375 -17.41684 -17.20462 -16.97123 -16.70019 -16.48526 -16.01861 -15.67949 -15.56346 -15.14494 -14.91972 -14.78257 -14.50139 -14.25108 -14.22650 -13.89256 -13.75876 -13.36256 -13.29836 -13.22736 -13.17605 -12.82560 -12.76742 -12.61798 -12.55626 -12.48353 -12.37874 -12.17348 -12.09546 -12.03639 -12.02152 -11.91823 -11.51597 -11.49973 -11.43113 -11.06040 -10.61566 -10.44894 -10.24873 -9.75393 -8.21130 -6.38783 -0.82274 1.49862 1.52341 1.60791 1.62700 2.43292 2.55182 2.94750 2.95888 3.05664 3.47553 3.56650 3.63980 3.68556 3.72531 3.85939 4.04769 4.11710 4.28003 4.31434 4.34083 4.40967 4.49691 4.52901 4.55272 4.56150 4.65107 4.70427 4.76294 4.78314 4.78836 4.81800 4.93512 4.99145 5.04013 5.06399 5.10523 5.17017 5.21442 5.23804 5.27692 5.28517 5.44224 5.73950 5.82563 6.02777 6.32610 6.69466 7.34644 7.55181 8.84761 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002103 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.417173 B =13308.818287 C =13837.124062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.082 4.082 3 H 0.083 0.917 4 C 0.077 3.923 5 O -0.397 6.397 6 C 0.076 3.924 7 C -0.151 4.151 8 C -0.121 4.121 9 C -0.124 4.124 10 C -0.126 4.126 11 C -0.603 4.603 12 S 2.626 3.374 13 O -0.995 6.995 14 O -0.987 6.987 15 N -1.042 6.042 16 C 0.108 3.892 17 C 0.207 3.793 18 O -0.592 6.592 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.023 3.977 22 N -0.924 5.924 23 Si 0.973 3.027 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.259 1.259 27 C 0.133 3.867 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.042 0.958 45 H 0.102 0.898 46 H 0.386 0.614 47 H 0.274 0.726 48 H 0.120 0.880 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -2.120 -25.548 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.102 4.102 3 H 0.102 0.898 4 C 0.000 4.000 5 O -0.317 6.317 6 C 0.019 3.981 7 C -0.188 4.188 8 C -0.158 4.158 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.736 4.736 12 S 2.727 3.273 13 O -0.986 6.986 14 O -0.978 6.978 15 N -0.880 5.880 16 C -0.018 4.018 17 C 0.164 3.836 18 O -0.405 6.405 19 C -0.583 4.583 20 H 0.102 0.898 21 C -0.176 4.176 22 N -0.566 5.566 23 Si 0.799 3.201 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.183 1.183 27 C 0.008 3.992 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.178 0.822 43 H 0.180 0.820 44 H 0.061 0.939 45 H 0.120 0.880 46 H 0.242 0.758 47 H 0.084 0.916 48 H 0.138 0.862 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.708 -0.624 -25.932 26.081 hybrid contribution 0.088 -1.343 1.062 1.714 sum 2.797 -1.966 -24.870 25.104 Atomic orbital electron populations 1.22262 0.93808 1.04186 1.03337 1.20830 0.97125 1.00129 0.92117 0.89823 1.22487 0.99454 0.94600 0.83472 1.87920 1.78708 1.50972 1.14094 1.23015 0.94050 0.97170 0.83869 1.22938 0.96977 1.01651 0.97274 1.22453 0.96771 1.02142 0.94460 1.22351 0.95062 0.99772 0.98926 1.22270 0.98046 1.01376 0.94636 1.30554 1.14085 1.15153 1.13776 1.04313 0.73266 0.74459 0.75277 1.93503 1.75303 1.42887 1.86916 1.93507 1.31454 1.87262 1.85537 1.59785 1.28849 1.52461 1.46882 1.23435 0.99189 0.89692 0.89503 1.20040 0.90507 0.86166 0.86900 1.86026 1.73655 1.36924 1.43910 1.21792 1.04653 1.18810 1.13072 0.89849 1.25885 0.95096 0.99025 0.97637 1.69377 1.15471 1.44322 1.27383 0.85317 0.78065 0.78275 0.78487 1.20670 1.21190 1.18308 1.22921 0.86472 1.01143 0.88705 0.90431 0.92938 0.90049 0.91222 0.91552 0.90741 0.91781 0.90744 0.90327 0.90862 0.90186 0.92100 0.89783 0.91578 0.82237 0.81993 0.93929 0.88041 0.75804 0.91619 0.86245 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.25 8.78 71.98 0.63 -3.62 16 2 C -0.08 -1.80 2.62 -10.79 -0.03 -1.83 16 3 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.08 1.35 5.16 71.98 0.37 1.72 16 5 O -0.40 -7.84 9.43 -148.98 -1.41 -9.25 16 6 C 0.08 1.13 3.38 31.32 0.11 1.24 16 7 C -0.15 -2.02 6.56 31.70 0.21 -1.82 16 8 C -0.12 -1.26 6.91 31.91 0.22 -1.04 16 9 C -0.12 -1.38 6.83 31.67 0.22 -1.16 16 10 C -0.13 -1.65 6.61 31.32 0.21 -1.45 16 11 C -0.60 -13.14 5.62 71.98 0.40 -12.74 16 12 S 2.63 93.06 5.61 -56.49 -0.32 92.74 16 13 O -1.00 -41.62 18.07 -127.65 -2.31 -43.92 16 14 O -0.99 -41.07 15.82 -127.65 -2.02 -43.09 16 15 N -1.04 -40.70 4.10 -550.90 -2.26 -42.96 16 16 C 0.11 4.63 8.10 83.09 0.67 5.30 16 17 C 0.21 9.98 1.57 -11.29 -0.02 9.96 16 18 O -0.59 -32.56 13.54 -148.98 -2.02 -34.58 16 19 C -0.54 -26.47 8.69 25.60 0.22 -26.25 16 20 H 0.08 3.76 7.81 -2.91 -0.02 3.73 16 21 C 0.02 1.14 5.39 84.65 0.46 1.59 16 22 N -0.92 -48.12 11.01 21.45 0.24 -47.89 16 23 Si 0.97 38.95 29.54 68.60 2.03 40.98 16 24 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.29 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 27 C 0.13 5.27 8.11 83.18 0.67 5.95 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.50 5.61 -2.39 -0.01 1.49 16 30 H 0.08 1.79 7.82 -2.38 -0.02 1.78 16 31 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.91 7.81 -2.39 -0.02 0.90 16 34 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 41 H 0.07 1.04 7.96 -2.38 -0.02 1.03 16 42 H 0.16 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.16 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.10 3.77 8.10 -2.39 -0.02 3.75 16 46 H 0.39 21.69 6.32 -74.05 -0.47 21.22 16 47 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 48 H 0.12 3.77 8.10 -2.39 -0.02 3.75 16 49 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -68.09 402.64 -3.26 -71.35 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: 0.46 Total: 40.76 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.35 Total: -24.14 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -2.02 Total: -90.85 kcal Atomic # 8 Polarization: -123.10 SS G_CDS: -7.75 Total: -130.84 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 16 Polarization: 93.06 SS G_CDS: -0.32 Total: 92.74 kcal Total: -68.09 -3.26 -71.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549805289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.367 kcal (2) G-P(sol) polarization free energy of solvation -68.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds