Wall clock time and date at job start Wed Apr 1 2020 05:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47771 * 2 1 4 4 C 1.53002 * 109.47024 * 120.00713 * 2 1 3 5 5 O 1.42905 * 109.47006 * 294.99320 * 4 2 1 6 6 C 1.42891 * 113.99951 * 180.02562 * 5 4 2 7 7 C 1.54961 * 110.92489 * 96.54261 * 6 5 4 8 8 C 1.54270 * 104.16191 * 156.29335 * 7 6 5 9 9 C 1.53869 * 106.63967 * 336.44607 * 8 7 6 10 10 C 1.54268 * 106.60115 * 359.97438 * 9 8 7 11 11 C 1.53005 * 109.46983 * 239.99877 * 2 1 3 12 12 S 1.81404 * 109.46828 * 65.00442 * 11 2 1 13 13 O 1.42102 * 110.54198 * 291.62510 * 12 11 2 14 14 O 1.42100 * 110.54181 * 68.37468 * 12 11 2 15 15 N 1.65596 * 104.44900 * 180.02562 * 12 11 2 16 16 C 1.47071 * 136.05663 * 269.62594 * 15 12 11 17 17 C 1.53239 * 88.08225 * 207.20732 * 16 15 12 18 18 O 1.42899 * 114.19746 * 87.73103 * 17 16 15 19 19 C 1.50702 * 114.32177 * 220.47347 * 17 16 15 20 20 H 1.07992 * 120.00473 * 93.76126 * 19 17 16 21 21 C 1.37884 * 119.99695 * 273.75442 * 19 17 16 22 22 N 1.31512 * 120.00041 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99931 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46825 * 59.99976 * 23 21 19 25 25 H 1.48495 * 109.46973 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47085 * 300.00777 * 23 21 19 27 27 C 1.47071 * 136.05944 * 90.00058 * 15 12 11 28 28 H 1.09004 * 109.46963 * 59.99482 * 1 2 3 29 29 H 1.08996 * 109.47513 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47048 * 300.00295 * 1 2 3 31 31 H 1.09001 * 109.47041 * 174.99862 * 4 2 1 32 32 H 1.09001 * 109.47251 * 54.99619 * 4 2 1 33 33 H 1.09001 * 110.67675 * 333.23323 * 6 5 4 34 34 H 1.08997 * 110.47708 * 37.63933 * 7 6 5 35 35 H 1.09002 * 110.53308 * 274.97325 * 7 6 5 36 36 H 1.09002 * 110.03399 * 217.13605 * 8 7 6 37 37 H 1.08995 * 110.02943 * 95.75505 * 8 7 6 38 38 H 1.08999 * 110.03405 * 119.26051 * 9 8 7 39 39 H 1.09001 * 110.03705 * 240.64196 * 9 8 7 40 40 H 1.08997 * 110.48788 * 142.28685 * 10 9 8 41 41 H 1.09000 * 110.48806 * 264.79985 * 10 9 8 42 42 H 1.08997 * 109.47228 * 185.00239 * 11 2 1 43 43 H 1.08998 * 109.47163 * 305.00464 * 11 2 1 44 44 H 1.09004 * 113.46647 * 321.94099 * 16 15 12 45 45 H 1.08998 * 113.46332 * 92.37915 * 16 15 12 46 46 H 0.96696 * 114.00312 * 86.29894 * 18 17 16 47 47 H 0.97000 * 120.00054 * 179.97438 * 22 21 19 48 48 H 1.09000 * 113.46492 * 267.62356 * 27 15 12 49 49 H 1.08999 * 113.46250 * 38.00522 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 8 1.6620 0.0166 2.4131 6 6 2.0923 -0.5741 3.6409 7 6 3.4176 0.0645 4.1277 8 6 3.4225 -0.1897 5.6494 9 6 1.9546 -0.3809 6.0689 10 6 1.1076 -0.2357 4.7877 11 6 2.0399 -0.7213 -1.2493 12 16 1.5601 0.2157 -2.7266 13 8 0.1519 0.1684 -2.9115 14 8 2.2660 1.4474 -2.7869 15 7 2.1670 -0.6659 -3.9902 16 6 3.4250 -0.6978 -4.7515 17 6 2.6304 -1.2438 -5.9426 18 8 2.0651 -0.2345 -6.7816 19 6 3.3338 -2.3324 -6.7114 20 1 3.1491 -3.3689 -6.4712 21 6 4.2132 -2.0050 -7.7217 22 7 4.4384 -0.7427 -8.0140 23 14 5.0846 -3.3543 -8.6753 24 1 4.0777 -4.2186 -9.3421 25 1 5.9699 -2.7441 -9.6994 26 1 5.8992 -4.1731 -7.7418 27 6 1.6829 -1.7569 -4.8494 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1262 -0.7997 1.2055 32 1 1.6052 -1.7200 1.2950 33 1 2.2015 -1.6531 3.5315 34 1 3.4244 1.1344 3.9197 35 1 4.2720 -0.4220 3.6570 36 1 3.8510 0.6670 6.1696 37 1 3.9957 -1.0886 5.8758 38 1 1.8151 -1.3730 6.4982 39 1 1.6707 0.3824 6.7934 40 1 0.2767 -0.9412 4.7977 41 1 0.7388 0.7851 4.6878 42 1 3.1262 -0.7996 -1.2056 43 1 1.6052 -1.7198 -1.2952 44 1 3.8491 0.2902 -4.9306 45 1 4.1541 -1.4047 -4.3554 46 1 2.6645 0.0866 -7.4691 47 1 5.0573 -0.5123 -8.7245 48 1 1.9433 -2.7487 -4.4797 49 1 0.6284 -1.6681 -5.1109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549805290.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:32 Heat of formation + Delta-G solvation = -169.551324 kcal Electronic energy + Delta-G solvation = -29062.182794 eV Core-core repulsion = 24923.301822 eV Total energy + Delta-G solvation = -4138.880971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.34379 -40.02249 -38.21754 -37.88074 -37.04775 -35.83818 -35.70141 -34.06405 -29.72332 -29.66358 -29.06809 -28.48518 -26.90532 -26.73527 -26.42016 -21.98342 -21.60280 -21.31218 -21.12507 -19.76762 -19.33345 -18.47566 -18.11931 -17.46349 -17.23041 -16.93405 -16.72593 -16.44289 -16.03995 -15.72303 -15.42892 -15.32328 -14.95835 -14.67669 -14.57482 -14.21051 -14.08904 -13.82553 -13.73352 -13.38315 -13.33714 -13.25608 -13.17594 -13.00959 -12.74689 -12.66613 -12.58068 -12.46740 -12.33164 -12.20410 -12.15066 -12.10699 -12.05012 -11.94976 -11.49724 -11.48075 -11.28760 -11.04884 -10.61691 -10.42497 -10.24776 -9.75342 -8.20856 -6.38679 -0.82142 1.51174 1.52739 1.60004 1.62292 2.43477 2.52744 2.94468 2.95880 3.05775 3.47128 3.56619 3.63816 3.70954 3.72995 3.83205 4.04027 4.11721 4.26710 4.29843 4.33224 4.41149 4.48273 4.50399 4.56037 4.58897 4.64263 4.66868 4.73216 4.77282 4.77903 4.82718 4.92568 5.00697 5.06016 5.06055 5.10596 5.15793 5.22463 5.25168 5.27771 5.27949 5.44955 5.73986 5.82600 6.02801 6.30579 6.69461 7.34746 7.55055 8.84838 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.002125 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.937429 B =13172.836940 C =13916.474988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.083 4.083 3 H 0.081 0.919 4 C 0.078 3.922 5 O -0.395 6.395 6 C 0.075 3.925 7 C -0.149 4.149 8 C -0.122 4.122 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.603 4.603 12 S 2.626 3.374 13 O -0.982 6.982 14 O -0.999 6.999 15 N -1.042 6.042 16 C 0.105 3.895 17 C 0.207 3.793 18 O -0.592 6.592 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.023 3.977 22 N -0.925 5.925 23 Si 0.974 3.026 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.263 1.263 27 C 0.135 3.865 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.040 0.960 45 H 0.102 0.898 46 H 0.386 0.614 47 H 0.274 0.726 48 H 0.120 0.880 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -5.099 25.273 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.103 4.103 3 H 0.099 0.901 4 C 0.000 4.000 5 O -0.314 6.314 6 C 0.017 3.983 7 C -0.187 4.187 8 C -0.160 4.160 9 C -0.159 4.159 10 C -0.161 4.161 11 C -0.735 4.735 12 S 2.727 3.273 13 O -0.973 6.973 14 O -0.990 6.990 15 N -0.880 5.880 16 C -0.021 4.021 17 C 0.164 3.836 18 O -0.405 6.405 19 C -0.584 4.584 20 H 0.102 0.898 21 C -0.177 4.177 22 N -0.566 5.566 23 Si 0.799 3.201 24 H -0.198 1.198 25 H -0.215 1.215 26 H -0.188 1.188 27 C 0.010 3.990 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.175 0.825 43 H 0.182 0.818 44 H 0.059 0.941 45 H 0.119 0.881 46 H 0.242 0.758 47 H 0.084 0.916 48 H 0.138 0.862 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.248 -3.930 25.629 26.026 hybrid contribution 1.412 -0.535 -0.933 1.775 sum -0.836 -4.465 24.696 25.111 Atomic orbital electron populations 1.22258 0.93523 1.04363 1.03367 1.20835 0.97344 1.00019 0.92090 0.90095 1.22510 0.99385 0.94716 0.83392 1.87870 1.78545 1.50941 1.14071 1.23361 0.94238 0.97125 0.83576 1.22858 0.97650 1.01336 0.96875 1.22054 0.97089 1.02436 0.94384 1.22080 0.94283 1.02824 0.96664 1.22433 0.97867 1.02382 0.93387 1.30551 1.13883 1.15351 1.13760 1.04311 0.73264 0.74448 0.75287 1.93502 1.31082 1.87229 1.85522 1.93506 1.75424 1.43188 1.86927 1.59786 1.29189 1.52106 1.46904 1.23457 0.86734 1.00096 0.91772 1.20036 0.90313 0.86504 0.86743 1.86022 1.46403 1.58610 1.49450 1.21769 1.24589 0.93822 1.18241 0.89810 1.25895 0.96519 0.97909 0.97335 1.69372 1.37118 1.18182 1.31918 0.85367 0.78074 0.78673 0.78027 1.19775 1.21505 1.18801 1.22905 0.98918 0.90214 0.86960 0.92863 0.90116 0.90097 0.91752 0.90899 0.90088 0.91924 0.91194 0.91252 0.90748 0.90514 0.90919 0.90599 0.91665 0.82456 0.81753 0.94137 0.88054 0.75829 0.91617 0.86236 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.09 8.78 71.98 0.63 -3.46 16 2 C -0.08 -1.81 2.62 -10.79 -0.03 -1.84 16 3 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.08 1.35 5.15 71.98 0.37 1.72 16 5 O -0.39 -7.82 9.67 -148.98 -1.44 -9.26 16 6 C 0.07 1.12 3.39 31.91 0.11 1.22 16 7 C -0.15 -2.09 6.57 31.70 0.21 -1.89 16 8 C -0.12 -1.29 6.80 31.32 0.21 -1.07 16 9 C -0.12 -1.20 6.80 31.32 0.21 -0.99 16 10 C -0.12 -1.63 6.55 31.67 0.21 -1.42 16 11 C -0.60 -13.09 5.62 71.98 0.40 -12.69 16 12 S 2.63 92.95 5.61 -56.49 -0.32 92.63 16 13 O -0.98 -39.43 15.82 -127.65 -2.02 -41.45 16 14 O -1.00 -43.23 18.07 -127.65 -2.31 -45.54 16 15 N -1.04 -40.67 4.10 -550.82 -2.26 -42.93 16 16 C 0.11 4.56 8.10 83.09 0.67 5.24 16 17 C 0.21 9.99 1.57 -11.29 -0.02 9.97 16 18 O -0.59 -32.54 13.54 -148.98 -2.02 -34.56 16 19 C -0.55 -26.51 8.69 25.60 0.22 -26.29 16 20 H 0.08 3.76 7.81 -2.91 -0.02 3.73 16 21 C 0.02 1.13 5.39 84.66 0.46 1.59 16 22 N -0.92 -48.28 11.01 21.45 0.24 -48.04 16 23 Si 0.97 38.94 29.54 68.60 2.03 40.97 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 C 0.13 5.32 8.11 83.18 0.67 5.99 16 28 H 0.05 1.48 5.61 -2.38 -0.01 1.46 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.74 7.82 -2.39 -0.02 1.72 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 33 H 0.08 1.00 7.82 -2.39 -0.02 0.98 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.16 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.16 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.10 3.79 8.10 -2.39 -0.02 3.78 16 46 H 0.39 21.71 6.33 -74.06 -0.47 21.24 16 47 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 48 H 0.12 3.73 8.10 -2.39 -0.02 3.71 16 49 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -68.16 402.97 -3.30 -71.46 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: 0.46 Total: 40.63 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.34 Total: -23.90 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -2.02 Total: -90.97 kcal Atomic # 8 Polarization: -123.02 SS G_CDS: -7.78 Total: -130.81 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: 92.95 SS G_CDS: -0.32 Total: 92.63 kcal Total: -68.16 -3.30 -71.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549805290.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.092 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds