Wall clock time and date at job start Wed Apr 1 2020 04:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47441 * 2 1 4 4 C 1.52998 * 109.47446 * 239.99745 * 2 1 3 5 5 C 1.52995 * 109.47470 * 175.00425 * 4 2 1 6 6 C 1.52998 * 109.47470 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47332 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47132 * 305.00609 * 7 6 5 9 9 C 1.53000 * 109.46719 * 65.00139 * 7 6 5 10 10 C 1.50698 * 109.47253 * 184.99666 * 7 6 5 11 11 O 1.20827 * 119.99788 * 0.02562 * 10 7 6 12 12 O 1.34226 * 120.00250 * 180.02562 * 10 7 6 13 13 N 1.46502 * 109.46951 * 119.99868 * 2 1 3 14 14 S 1.65605 * 120.00084 * 264.72499 * 13 2 1 15 15 O 1.42098 * 104.28000 * 181.34462 * 14 13 2 16 16 O 1.42100 * 104.27420 * 309.20700 * 14 13 2 17 17 C 1.81397 * 104.44715 * 65.27352 * 14 13 2 18 18 C 1.53007 * 109.47075 * 172.70316 * 17 14 13 19 19 C 1.50698 * 115.54821 * 65.16222 * 18 17 14 20 20 H 1.07999 * 119.99624 * 264.90367 * 19 18 17 21 21 C 1.37868 * 120.00279 * 84.91087 * 19 18 17 22 22 N 1.31526 * 120.00025 * 352.84707 * 21 19 18 23 23 Si 1.86800 * 120.00180 * 172.84446 * 21 19 18 24 24 H 1.48499 * 109.47080 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47157 * 119.99835 * 23 21 19 26 26 H 1.48503 * 109.47216 * 240.00158 * 23 21 19 27 27 C 1.52999 * 117.49733 * 279.48792 * 18 17 14 28 28 C 1.53003 * 117.49528 * 210.83243 * 18 17 14 29 29 H 1.09002 * 109.47119 * 60.00086 * 1 2 3 30 30 H 1.09000 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47469 * 300.00349 * 1 2 3 32 32 H 1.09005 * 109.46980 * 295.00575 * 4 2 1 33 33 H 1.08994 * 109.47153 * 55.00153 * 4 2 1 34 34 H 1.09005 * 109.47142 * 300.00051 * 5 4 2 35 35 H 1.09002 * 109.47169 * 59.99405 * 5 4 2 36 36 H 1.08999 * 109.47311 * 299.99903 * 6 5 4 37 37 H 1.08999 * 109.46733 * 59.99848 * 6 5 4 38 38 H 1.08999 * 109.47654 * 300.00232 * 9 7 6 39 39 H 1.09004 * 109.47602 * 60.00054 * 9 7 6 40 40 H 1.09004 * 109.47210 * 179.97438 * 9 7 6 41 41 H 0.96700 * 116.99991 * 180.02562 * 12 10 7 42 42 H 0.97004 * 120.00504 * 84.99567 * 13 2 1 43 43 H 1.09003 * 109.47680 * 292.70227 * 17 14 13 44 44 H 1.09000 * 109.47656 * 52.70363 * 17 14 13 45 45 H 0.96999 * 119.99438 * 185.03520 * 22 21 19 46 46 H 1.09006 * 117.50236 * 0.02562 * 27 18 17 47 47 H 1.08996 * 117.49895 * 145.01622 * 27 18 17 48 48 H 1.09005 * 117.49164 * 214.97268 * 28 18 17 49 49 H 1.08995 * 117.50206 * 359.97012 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0749 -1.3352 -2.5624 7 6 5.5997 -1.2268 -2.6271 8 1 5.8916 -0.1777 -2.5818 9 6 6.2150 -1.9788 -1.4452 10 6 6.0920 -1.8300 -3.9174 11 8 5.3040 -2.2982 -4.7047 12 8 7.4057 -1.8473 -4.1921 13 7 2.0183 -0.6906 1.1962 14 16 2.4186 0.1778 2.5483 15 8 2.8713 -0.8018 3.4727 16 8 3.2915 1.1911 2.0682 17 6 0.8498 0.8998 3.1033 18 6 1.0536 1.5834 4.4570 19 6 1.9728 2.7775 4.4502 20 1 3.0162 2.6571 4.7019 21 6 1.4820 4.0235 4.1230 22 7 0.2495 4.1497 3.6813 23 14 2.5672 5.5328 4.3069 24 1 3.8998 5.1247 4.8196 25 1 2.7253 6.1927 2.9861 26 1 1.9391 6.4808 5.2619 27 6 1.0575 0.6957 5.7031 28 6 -0.1352 1.6123 5.4198 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -1.7716 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9994 -1.0728 -0.4258 36 1 3.7866 -2.3855 -2.5183 37 1 3.6404 -0.8761 -3.4503 38 1 5.8590 -1.5427 -0.5119 39 1 5.9231 -3.0281 -1.4904 40 1 7.3013 -1.9020 -1.4915 41 1 7.6734 -2.2444 -5.0321 42 1 2.1109 -1.6562 1.1950 43 1 0.5091 1.6341 2.3732 44 1 0.1024 0.1126 3.2027 45 1 -0.0722 5.0145 3.3821 46 1 0.9154 -0.3754 5.5586 47 1 1.7248 0.9754 6.5182 48 1 -0.2520 2.4949 6.0487 49 1 -1.0625 1.1448 5.0887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593256849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:29 Heat of formation + Delta-G solvation = -172.673114 kcal Electronic energy + Delta-G solvation = -29587.630584 eV Core-core repulsion = 25448.614242 eV Total energy + Delta-G solvation = -4139.016342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.66236 -37.74524 -36.75952 -36.52118 -36.18565 -35.49127 -35.05069 -32.05030 -31.67774 -29.63264 -28.17805 -26.66554 -25.47717 -25.04298 -22.26743 -21.21499 -21.01410 -20.18370 -19.74566 -18.73889 -18.30360 -17.07043 -16.89420 -16.49428 -16.11128 -15.85079 -15.24380 -15.08015 -14.73538 -14.45896 -14.17197 -13.89133 -13.71410 -13.59148 -13.45276 -13.13016 -12.84542 -12.44004 -12.37521 -11.93955 -11.86094 -11.83386 -11.73798 -11.57252 -11.48460 -11.28857 -11.25205 -11.06071 -11.03273 -10.96208 -10.94418 -10.74351 -10.60059 -10.55611 -10.47567 -10.45320 -10.10080 -9.72740 -9.19574 -8.96220 -8.57700 -8.09463 -6.15118 -4.25668 1.10364 1.92491 2.74430 3.27531 3.35541 3.42777 3.48213 4.36133 4.36357 4.53912 4.58296 4.62709 4.85778 4.93110 5.01736 5.06375 5.14413 5.20317 5.24783 5.26771 5.38141 5.45955 5.51921 5.59009 5.64275 5.68155 5.75910 5.81304 5.86804 5.89707 5.94506 6.00939 6.11941 6.19692 6.22544 6.29969 6.34735 6.36356 6.44896 6.61601 6.72116 6.98592 7.23458 7.33710 7.39081 7.59893 7.79410 8.19817 8.80183 9.45658 10.92501 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.002740 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.941993 B =10216.940532 C =10777.888184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.144 3.856 3 H 0.095 0.905 4 C -0.118 4.118 5 C -0.126 4.126 6 C -0.105 4.105 7 C -0.085 4.085 8 H 0.112 0.888 9 C -0.150 4.150 10 C 0.482 3.518 11 O -0.518 6.518 12 O -0.516 6.516 13 N -1.127 6.127 14 S 2.606 3.394 15 O -0.977 6.977 16 O -0.951 6.951 17 C -0.555 4.555 18 C 0.043 3.957 19 C -0.515 4.515 20 H 0.068 0.932 21 C 0.082 3.918 22 N -0.874 5.874 23 Si 0.892 3.108 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.283 1.283 27 C -0.208 4.208 28 C -0.141 4.141 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.407 0.593 42 H 0.408 0.592 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.262 0.738 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -11.341 -13.362 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.036 3.964 3 H 0.113 0.887 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.142 4.142 7 C -0.104 4.104 8 H 0.130 0.870 9 C -0.207 4.207 10 C 0.325 3.675 11 O -0.406 6.406 12 O -0.328 6.328 13 N -0.883 5.883 14 S 2.703 3.297 15 O -0.967 6.967 16 O -0.941 6.941 17 C -0.688 4.688 18 C 0.041 3.959 19 C -0.552 4.552 20 H 0.087 0.913 21 C -0.123 4.123 22 N -0.510 5.510 23 Si 0.719 3.281 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.209 1.209 27 C -0.245 4.245 28 C -0.181 4.181 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.266 0.734 42 H 0.240 0.760 43 H 0.152 0.848 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.038 -10.877 -12.885 17.598 hybrid contribution -0.171 0.271 -0.748 0.814 sum 4.867 -10.605 -13.632 17.944 Atomic orbital electron populations 1.22448 0.95598 1.02537 1.03205 1.20799 0.93598 0.97173 0.84812 0.88710 1.21806 0.95541 1.01062 0.97256 1.21697 0.95672 1.01512 0.97413 1.21545 0.91229 1.02118 0.99336 1.21123 0.97522 1.02009 0.89721 0.87005 1.21866 1.01417 1.00240 0.97148 1.23716 0.79655 0.75610 0.88521 1.90714 1.56408 1.43812 1.49620 1.84562 1.27135 1.76140 1.44969 1.56056 1.84470 1.19257 1.28538 1.05126 0.77990 0.73953 0.72615 1.93501 1.80418 1.59957 1.62826 1.93530 1.61931 1.59707 1.78913 1.30072 1.18663 1.09743 1.10319 1.18287 0.99468 0.95112 0.83046 1.20568 0.94949 0.90487 1.49241 0.91350 1.24951 0.94755 0.98908 0.93699 1.69991 1.15554 1.24746 1.40662 0.86525 0.81080 0.82482 0.78055 1.19217 1.20611 1.20872 1.23190 1.03467 0.95511 1.02375 1.22549 0.91168 0.99977 1.04369 0.91503 0.92161 0.91355 0.91387 0.90706 0.90973 0.90901 0.91104 0.90927 0.90055 0.92108 0.91297 0.73405 0.75982 0.84795 0.88292 0.92801 0.90730 0.89566 0.89597 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.49 37.16 0.35 -1.65 16 2 C 0.14 1.76 2.82 -67.93 -0.19 1.57 16 3 H 0.09 1.32 7.47 -51.93 -0.39 0.93 16 4 C -0.12 -1.14 4.81 -26.73 -0.13 -1.27 16 5 C -0.13 -1.27 4.86 -26.73 -0.13 -1.40 16 6 C -0.10 -0.96 4.03 -26.73 -0.11 -1.07 16 7 C -0.08 -0.74 2.83 -91.77 -0.26 -1.00 16 8 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.15 -1.23 8.88 37.16 0.33 -0.90 16 10 C 0.48 4.62 7.63 36.00 0.27 4.90 16 11 O -0.52 -6.44 16.68 -18.75 -0.31 -6.75 16 12 O -0.52 -3.79 13.32 -39.25 -0.52 -4.31 16 13 N -1.13 -15.50 4.81 -4.90 -0.02 -15.53 16 14 S 2.61 50.53 5.16 -107.50 -0.55 49.98 16 15 O -0.98 -20.93 18.08 -57.54 -1.04 -21.97 16 16 O -0.95 -21.60 17.11 -57.54 -0.98 -22.59 16 17 C -0.56 -11.29 4.86 37.16 0.18 -11.11 16 18 C 0.04 1.03 1.33 -155.66 -0.21 0.83 16 19 C -0.52 -13.90 8.23 -34.44 -0.28 -14.19 16 20 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 21 C 0.08 2.20 5.38 -17.82 -0.10 2.10 16 22 N -0.87 -23.59 12.96 55.43 0.72 -22.87 16 23 Si 0.89 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.21 -4.53 9.96 -26.70 -0.27 -4.80 16 28 C -0.14 -3.19 9.47 -26.69 -0.25 -3.44 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.87 6.06 -51.93 -0.31 0.55 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.78 6.18 -51.93 -0.32 0.46 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 38 H 0.08 0.71 6.57 -51.93 -0.34 0.37 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 41 H 0.41 1.30 9.10 45.56 0.41 1.72 16 42 H 0.41 4.65 8.80 -34.47 -0.30 4.34 16 43 H 0.13 2.81 7.27 -51.92 -0.38 2.43 16 44 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 45 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 46 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 48 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 49 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 413.00 15.07 6.22 6.22 Total: -1.00 -34.33 413.00 -9.81 -44.14 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.50 Total: 8.99 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: -0.78 Total: -31.42 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.69 Total: -38.40 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -2.86 Total: -55.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 50.53 SS G_CDS: -0.55 Total: 49.98 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.33 -9.81 -44.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593256849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.538 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds