Wall clock time and date at job start Wed Apr 1 2020 04:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46672 * 2 1 4 4 N 1.46503 * 109.46848 * 119.99728 * 2 1 3 5 5 S 1.65599 * 119.99783 * 264.99927 * 4 2 1 6 6 O 1.42096 * 104.27952 * 308.92810 * 5 4 2 7 7 O 1.42101 * 104.27679 * 181.07607 * 5 4 2 8 8 C 1.81398 * 104.44942 * 65.00573 * 5 4 2 9 9 C 1.53006 * 109.46859 * 179.97438 * 8 5 4 10 10 C 1.53000 * 109.46722 * 179.97438 * 9 8 5 11 11 C 1.50705 * 109.47023 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99846 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99853 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00040 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99723 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47365 * 179.97438 * 15 13 11 17 17 H 1.48509 * 109.47241 * 299.99680 * 15 13 11 18 18 H 1.48501 * 109.47384 * 59.99456 * 15 13 11 19 19 C 1.52991 * 109.47306 * 239.99915 * 2 1 3 20 20 H 1.09005 * 112.85065 * 294.63249 * 19 2 1 21 21 C 1.53781 * 113.61861 * 163.43802 * 19 2 1 22 22 C 1.53952 * 87.02268 * 220.04854 * 21 19 2 23 23 H 1.08995 * 113.53739 * 270.81003 * 22 21 19 24 24 C 1.50695 * 113.74382 * 139.94140 * 22 21 19 25 25 O 1.20827 * 120.00274 * 262.40197 * 24 22 21 26 26 O 1.34228 * 120.00255 * 82.40340 * 24 22 21 27 27 C 1.53784 * 113.61490 * 65.82918 * 19 2 1 28 28 C 1.53003 * 113.61243 * 254.52820 * 27 19 2 29 29 C 1.52998 * 113.61374 * 25.43509 * 27 19 2 30 30 H 1.08997 * 109.47154 * 66.03375 * 1 2 3 31 31 H 1.08999 * 109.47007 * 186.03364 * 1 2 3 32 32 H 1.08996 * 109.47287 * 306.02709 * 1 2 3 33 33 H 0.97000 * 120.00025 * 85.00826 * 4 2 1 34 34 H 1.08999 * 109.47266 * 60.00054 * 8 5 4 35 35 H 1.09000 * 109.46989 * 299.99216 * 8 5 4 36 36 H 1.08991 * 109.47300 * 59.99805 * 9 8 5 37 37 H 1.09000 * 109.46755 * 299.99452 * 9 8 5 38 38 H 1.09004 * 109.47236 * 59.99774 * 10 9 8 39 39 H 1.08996 * 109.47349 * 300.00026 * 10 9 8 40 40 H 0.97001 * 119.99624 * 179.97438 * 14 13 11 41 41 H 1.09005 * 113.61201 * 334.56789 * 21 19 2 42 42 H 1.08999 * 113.61826 * 105.46534 * 21 19 2 43 43 H 0.96700 * 117.00175 * 179.97438 * 26 24 22 44 44 H 1.08999 * 109.46821 * 60.00268 * 28 27 19 45 45 H 1.09003 * 109.46861 * 180.02562 * 28 27 19 46 46 H 1.08996 * 109.47310 * 299.99938 * 28 27 19 47 47 H 1.08995 * 109.47337 * 60.85063 * 29 27 19 48 48 H 1.08994 * 109.47157 * 180.85351 * 29 27 19 49 49 H 1.09003 * 109.46603 * 300.85018 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1773 2.5505 6 8 3.2874 1.1907 2.0751 7 8 2.8606 -0.8027 3.4766 8 6 0.8407 0.8990 3.0985 9 6 1.0751 1.7342 4.3588 10 6 -0.2503 2.3434 4.8206 11 6 -0.0196 3.1655 6.0624 12 1 0.9729 3.2452 6.4806 13 6 -1.0759 3.8152 6.6652 14 7 -2.2846 3.7178 6.1561 15 14 -0.7898 4.8348 8.2039 16 1 -2.0761 5.4260 8.6523 17 1 -0.2422 3.9674 9.2778 18 1 0.1766 5.9220 7.9049 19 6 2.0400 -0.7212 -1.2491 20 1 1.7864 -1.7813 -1.2591 21 6 3.5187 -0.4387 -1.5631 22 6 3.1093 -0.3793 -3.0460 23 1 3.1493 -1.3461 -3.5477 24 6 3.7996 0.7120 -3.8228 25 8 3.2405 1.7666 -4.0102 26 8 5.0357 0.5126 -4.3066 27 6 1.7015 0.0055 -2.5615 28 6 0.5764 -0.6592 -3.3574 29 6 1.5019 1.5131 -2.3933 30 1 -0.3633 0.4174 -0.9390 31 1 -0.3633 -1.0220 0.1080 32 1 -0.3633 0.6044 0.8311 33 1 2.1110 -1.6561 1.1950 34 1 0.1315 0.1010 3.3185 35 1 0.4386 1.5353 2.3101 36 1 1.7843 2.5321 4.1393 37 1 1.4769 1.0975 5.1470 38 1 -0.9600 1.5457 5.0401 39 1 -0.6518 2.9801 4.0323 40 1 -3.0278 4.1745 6.5804 41 1 3.8743 0.5137 -1.1699 42 1 4.1822 -1.2702 -1.3253 43 1 5.4375 1.2416 -4.7987 44 1 -0.3312 -0.6813 -2.7543 45 1 0.3930 -0.0921 -4.2701 46 1 0.8664 -1.6777 -3.6152 47 1 2.4207 1.9613 -2.0153 48 1 1.2513 1.9561 -3.3571 49 1 0.6915 1.6957 -1.6877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593943928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:14 Heat of formation + Delta-G solvation = -165.077984 kcal Electronic energy + Delta-G solvation = -29728.441300 eV Core-core repulsion = 25589.754308 eV Total energy + Delta-G solvation = -4138.686993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68136 -39.48336 -36.91517 -36.44741 -35.78482 -35.56845 -34.67920 -32.20341 -31.41193 -29.97776 -27.90843 -27.68942 -27.28692 -23.85481 -23.43588 -22.65490 -21.20892 -20.67667 -19.43966 -18.69124 -18.34821 -17.34261 -17.03360 -16.56027 -16.29245 -16.06146 -15.72488 -15.35220 -15.14698 -14.49296 -14.41088 -14.26136 -14.03454 -13.83829 -13.48739 -13.27987 -12.75577 -12.56154 -12.42431 -12.32419 -12.19126 -12.05484 -12.01009 -11.93904 -11.85395 -11.77719 -11.75700 -11.53429 -11.42968 -11.24102 -11.17390 -10.89628 -10.86250 -10.62547 -10.46323 -10.37709 -10.08315 -9.94656 -9.69667 -9.33084 -9.08687 -8.40446 -6.05706 -4.08730 0.47073 1.89281 2.72097 2.84015 3.32212 3.36068 3.39299 3.83457 3.94615 3.99432 4.21320 4.24631 4.42465 4.44235 4.68841 4.84447 4.89700 4.97982 5.02468 5.08361 5.12559 5.15919 5.25443 5.30632 5.34581 5.35822 5.43516 5.53585 5.58267 5.61989 5.71761 5.77055 5.86577 5.89640 5.92362 6.08253 6.12165 6.17189 6.26808 6.39351 6.45137 6.86655 6.93408 7.56546 7.61843 7.66760 7.92223 8.32808 8.97239 9.55923 11.05485 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.002363 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.256008 B =11848.280181 C =12183.539684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.153 3.847 3 H 0.097 0.903 4 N -1.118 6.118 5 S 2.598 3.402 6 O -0.962 6.962 7 O -0.965 6.965 8 C -0.611 4.611 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.287 1.287 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.103 4.103 20 H 0.104 0.896 21 C -0.117 4.117 22 C -0.106 4.106 23 H 0.124 0.876 24 C 0.486 3.514 25 O -0.504 6.504 26 O -0.519 6.519 27 C -0.052 4.052 28 C -0.140 4.140 29 C -0.131 4.131 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.414 0.586 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.408 0.592 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 -12.350 -23.397 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.046 3.954 3 H 0.115 0.885 4 N -0.875 5.875 5 S 2.694 3.306 6 O -0.952 6.952 7 O -0.955 6.955 8 C -0.742 4.742 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.212 1.212 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.122 4.122 20 H 0.122 0.878 21 C -0.154 4.154 22 C -0.125 4.125 23 H 0.142 0.858 24 C 0.328 3.672 25 O -0.392 6.392 26 O -0.332 6.332 27 C -0.053 4.053 28 C -0.197 4.197 29 C -0.188 4.188 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.266 0.734 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.637 -12.058 -22.846 27.239 hybrid contribution -0.330 0.641 0.309 0.784 sum 8.307 -11.417 -22.537 26.594 Atomic orbital electron populations 1.22596 0.94999 1.03355 1.03519 1.20820 0.94101 0.96720 0.83745 0.88529 1.55763 1.84306 1.19646 1.27772 1.05344 0.77645 0.74519 0.73104 1.93567 1.61809 1.60423 1.79407 1.93576 1.80190 1.59119 1.62624 1.30661 1.21097 1.12247 1.10222 1.21502 1.03624 0.97692 0.91711 1.19052 0.89798 0.95631 0.96207 1.21219 0.94591 1.30102 1.10604 0.92439 1.25015 0.95133 0.96599 0.97599 1.69947 0.99518 1.43565 1.40414 0.86618 0.77395 0.80524 0.83259 1.21248 1.20119 1.20118 1.22862 0.95634 1.00501 0.93244 0.87788 1.22988 0.97171 1.04010 0.91225 1.22752 0.96655 0.97238 0.95895 0.85824 1.23415 0.79006 0.88498 0.76268 1.90757 1.65249 1.27969 1.55197 1.84558 1.31988 1.49136 1.67472 1.21827 0.91937 0.97392 0.94166 1.21830 0.97937 0.99933 0.99999 1.21901 1.02175 0.91727 1.02955 0.90523 0.91502 0.91400 0.75250 0.85214 0.85417 0.91602 0.91617 0.96137 0.96120 0.92843 0.88686 0.89768 0.73359 0.91391 0.92194 0.92388 0.91993 0.90760 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.95 37.16 0.33 -1.15 16 2 C 0.15 1.37 1.93 -67.93 -0.13 1.23 16 3 H 0.10 0.99 6.24 -51.93 -0.32 0.67 16 4 N -1.12 -10.97 5.36 -4.89 -0.03 -10.99 16 5 S 2.60 37.15 5.44 -107.50 -0.58 36.56 16 6 O -0.96 -16.50 17.39 -57.54 -1.00 -17.50 16 7 O -0.96 -16.68 18.08 -57.54 -1.04 -17.72 16 8 C -0.61 -9.20 5.36 37.16 0.20 -9.00 16 9 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 10 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 11 C -0.53 -14.82 9.11 -34.44 -0.31 -15.14 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.10 -0.72 2.81 -89.81 -0.25 -0.97 16 20 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 21 C -0.12 -0.90 6.86 -25.83 -0.18 -1.08 16 22 C -0.11 -0.74 3.75 -90.87 -0.34 -1.09 16 23 H 0.12 0.63 7.96 -51.93 -0.41 0.21 16 24 C 0.49 4.23 7.58 36.00 0.27 4.50 16 25 O -0.50 -5.67 13.46 -18.75 -0.25 -5.92 16 26 O -0.52 -3.58 13.42 -39.25 -0.53 -4.11 16 27 C -0.05 -0.38 0.67 -153.69 -0.10 -0.48 16 28 C -0.14 -0.81 9.14 37.16 0.34 -0.47 16 29 C -0.13 -1.21 5.98 37.16 0.22 -0.98 16 30 H 0.08 0.54 4.88 -51.93 -0.25 0.28 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.61 5.91 -51.93 -0.31 0.30 16 33 H 0.41 3.16 8.80 -34.47 -0.30 2.86 16 34 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 35 H 0.13 1.71 6.68 -51.92 -0.35 1.36 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.09 0.92 7.54 -51.93 -0.39 0.52 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.41 1.26 9.10 45.56 0.41 1.67 16 44 H 0.07 0.37 7.13 -51.93 -0.37 0.00 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.27 7.94 -51.93 -0.41 -0.14 16 47 H 0.06 0.66 6.23 -51.93 -0.32 0.34 16 48 H 0.07 0.75 6.99 -51.93 -0.36 0.38 16 49 H 0.06 0.52 5.41 -51.93 -0.28 0.24 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -36.84 395.13 -9.11 -45.94 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.02 Total: 1.67 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -0.33 Total: -24.68 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.71 Total: -36.78 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -2.82 Total: -45.24 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 37.15 SS G_CDS: -0.58 Total: 36.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.84 -9.11 -45.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593943928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.137 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds