Wall clock time and date at job start Wed Apr 1 2020 04:25:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09005 * 109.46672 * 2 1
4 4 N 1.46503 * 109.46848 * 119.99728 * 2 1 3
5 5 S 1.65599 * 119.99783 * 264.99927 * 4 2 1
6 6 O 1.42096 * 104.27952 * 308.92810 * 5 4 2
7 7 O 1.42101 * 104.27679 * 181.07607 * 5 4 2
8 8 C 1.81398 * 104.44942 * 65.00573 * 5 4 2
9 9 C 1.53006 * 109.46859 * 179.97438 * 8 5 4
10 10 C 1.53000 * 109.46722 * 179.97438 * 9 8 5
11 11 C 1.50705 * 109.47023 * 179.97438 * 10 9 8
12 12 H 1.07999 * 119.99846 * 359.97438 * 11 10 9
13 13 C 1.37879 * 119.99853 * 180.02562 * 11 10 9
14 14 N 1.31516 * 120.00040 * 359.97438 * 13 11 10
15 15 Si 1.86796 * 119.99723 * 180.02562 * 13 11 10
16 16 H 1.48501 * 109.47365 * 179.97438 * 15 13 11
17 17 H 1.48509 * 109.47241 * 299.99680 * 15 13 11
18 18 H 1.48501 * 109.47384 * 59.99456 * 15 13 11
19 19 C 1.52991 * 109.47306 * 239.99915 * 2 1 3
20 20 H 1.09005 * 112.85065 * 294.63249 * 19 2 1
21 21 C 1.53781 * 113.61861 * 163.43802 * 19 2 1
22 22 C 1.53952 * 87.02268 * 220.04854 * 21 19 2
23 23 H 1.08995 * 113.53739 * 270.81003 * 22 21 19
24 24 C 1.50695 * 113.74382 * 139.94140 * 22 21 19
25 25 O 1.20827 * 120.00274 * 262.40197 * 24 22 21
26 26 O 1.34228 * 120.00255 * 82.40340 * 24 22 21
27 27 C 1.53784 * 113.61490 * 65.82918 * 19 2 1
28 28 C 1.53003 * 113.61243 * 254.52820 * 27 19 2
29 29 C 1.52998 * 113.61374 * 25.43509 * 27 19 2
30 30 H 1.08997 * 109.47154 * 66.03375 * 1 2 3
31 31 H 1.08999 * 109.47007 * 186.03364 * 1 2 3
32 32 H 1.08996 * 109.47287 * 306.02709 * 1 2 3
33 33 H 0.97000 * 120.00025 * 85.00826 * 4 2 1
34 34 H 1.08999 * 109.47266 * 60.00054 * 8 5 4
35 35 H 1.09000 * 109.46989 * 299.99216 * 8 5 4
36 36 H 1.08991 * 109.47300 * 59.99805 * 9 8 5
37 37 H 1.09000 * 109.46755 * 299.99452 * 9 8 5
38 38 H 1.09004 * 109.47236 * 59.99774 * 10 9 8
39 39 H 1.08996 * 109.47349 * 300.00026 * 10 9 8
40 40 H 0.97001 * 119.99624 * 179.97438 * 14 13 11
41 41 H 1.09005 * 113.61201 * 334.56789 * 21 19 2
42 42 H 1.08999 * 113.61826 * 105.46534 * 21 19 2
43 43 H 0.96700 * 117.00175 * 179.97438 * 26 24 22
44 44 H 1.08999 * 109.46821 * 60.00268 * 28 27 19
45 45 H 1.09003 * 109.46861 * 180.02562 * 28 27 19
46 46 H 1.08996 * 109.47310 * 299.99938 * 28 27 19
47 47 H 1.08995 * 109.47337 * 60.85063 * 29 27 19
48 48 H 1.08994 * 109.47157 * 180.85351 * 29 27 19
49 49 H 1.09003 * 109.46603 * 300.85018 * 29 27 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1962
5 16 2.4121 0.1773 2.5505
6 8 3.2874 1.1907 2.0751
7 8 2.8606 -0.8027 3.4766
8 6 0.8407 0.8990 3.0985
9 6 1.0751 1.7342 4.3588
10 6 -0.2503 2.3434 4.8206
11 6 -0.0196 3.1655 6.0624
12 1 0.9729 3.2452 6.4806
13 6 -1.0759 3.8152 6.6652
14 7 -2.2846 3.7178 6.1561
15 14 -0.7898 4.8348 8.2039
16 1 -2.0761 5.4260 8.6523
17 1 -0.2422 3.9674 9.2778
18 1 0.1766 5.9220 7.9049
19 6 2.0400 -0.7212 -1.2491
20 1 1.7864 -1.7813 -1.2591
21 6 3.5187 -0.4387 -1.5631
22 6 3.1093 -0.3793 -3.0460
23 1 3.1493 -1.3461 -3.5477
24 6 3.7996 0.7120 -3.8228
25 8 3.2405 1.7666 -4.0102
26 8 5.0357 0.5126 -4.3066
27 6 1.7015 0.0055 -2.5615
28 6 0.5764 -0.6592 -3.3574
29 6 1.5019 1.5131 -2.3933
30 1 -0.3633 0.4174 -0.9390
31 1 -0.3633 -1.0220 0.1080
32 1 -0.3633 0.6044 0.8311
33 1 2.1110 -1.6561 1.1950
34 1 0.1315 0.1010 3.3185
35 1 0.4386 1.5353 2.3101
36 1 1.7843 2.5321 4.1393
37 1 1.4769 1.0975 5.1470
38 1 -0.9600 1.5457 5.0401
39 1 -0.6518 2.9801 4.0323
40 1 -3.0278 4.1745 6.5804
41 1 3.8743 0.5137 -1.1699
42 1 4.1822 -1.2702 -1.3253
43 1 5.4375 1.2416 -4.7987
44 1 -0.3312 -0.6813 -2.7543
45 1 0.3930 -0.0921 -4.2701
46 1 0.8664 -1.6777 -3.6152
47 1 2.4207 1.9613 -2.0153
48 1 1.2513 1.9561 -3.3571
49 1 0.6915 1.6957 -1.6877
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000593943928.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:14
Heat of formation + Delta-G solvation = -165.077984 kcal
Electronic energy + Delta-G solvation = -29728.441300 eV
Core-core repulsion = 25589.754308 eV
Total energy + Delta-G solvation = -4138.686993 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.165 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.68136 -39.48336 -36.91517 -36.44741 -35.78482 -35.56845 -34.67920 -32.20341
-31.41193 -29.97776 -27.90843 -27.68942 -27.28692 -23.85481 -23.43588 -22.65490
-21.20892 -20.67667 -19.43966 -18.69124 -18.34821 -17.34261 -17.03360 -16.56027
-16.29245 -16.06146 -15.72488 -15.35220 -15.14698 -14.49296 -14.41088 -14.26136
-14.03454 -13.83829 -13.48739 -13.27987 -12.75577 -12.56154 -12.42431 -12.32419
-12.19126 -12.05484 -12.01009 -11.93904 -11.85395 -11.77719 -11.75700 -11.53429
-11.42968 -11.24102 -11.17390 -10.89628 -10.86250 -10.62547 -10.46323 -10.37709
-10.08315 -9.94656 -9.69667 -9.33084 -9.08687 -8.40446 -6.05706 -4.08730
0.47073 1.89281 2.72097 2.84015 3.32212 3.36068 3.39299 3.83457
3.94615 3.99432 4.21320 4.24631 4.42465 4.44235 4.68841 4.84447
4.89700 4.97982 5.02468 5.08361 5.12559 5.15919 5.25443 5.30632
5.34581 5.35822 5.43516 5.53585 5.58267 5.61989 5.71761 5.77055
5.86577 5.89640 5.92362 6.08253 6.12165 6.17189 6.26808 6.39351
6.45137 6.86655 6.93408 7.56546 7.61843 7.66760 7.92223 8.32808
8.97239 9.55923 11.05485
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.016963 B = 0.002363 C = 0.002298
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1650.256008 B =11848.280181 C =12183.539684
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.153 3.847
3 H 0.097 0.903
4 N -1.118 6.118
5 S 2.598 3.402
6 O -0.962 6.962
7 O -0.965 6.965
8 C -0.611 4.611
9 C -0.106 4.106
10 C 0.031 3.969
11 C -0.527 4.527
12 H 0.057 0.943
13 C 0.058 3.942
14 N -0.895 5.895
15 Si 0.894 3.106
16 H -0.287 1.287
17 H -0.276 1.276
18 H -0.276 1.276
19 C -0.103 4.103
20 H 0.104 0.896
21 C -0.117 4.117
22 C -0.106 4.106
23 H 0.124 0.876
24 C 0.486 3.514
25 O -0.504 6.504
26 O -0.519 6.519
27 C -0.052 4.052
28 C -0.140 4.140
29 C -0.131 4.131
30 H 0.076 0.924
31 H 0.066 0.934
32 H 0.067 0.933
33 H 0.414 0.586
34 H 0.130 0.870
35 H 0.128 0.872
36 H 0.065 0.935
37 H 0.065 0.935
38 H 0.020 0.980
39 H 0.020 0.980
40 H 0.262 0.738
41 H 0.095 0.905
42 H 0.084 0.916
43 H 0.408 0.592
44 H 0.067 0.933
45 H 0.059 0.941
46 H 0.057 0.943
47 H 0.061 0.939
48 H 0.074 0.926
49 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.277 -12.350 -23.397 27.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.245 4.245
2 C 0.046 3.954
3 H 0.115 0.885
4 N -0.875 5.875
5 S 2.694 3.306
6 O -0.952 6.952
7 O -0.955 6.955
8 C -0.742 4.742
9 C -0.145 4.145
10 C -0.007 4.007
11 C -0.565 4.565
12 H 0.076 0.924
13 C -0.143 4.143
14 N -0.534 5.534
15 Si 0.722 3.278
16 H -0.212 1.212
17 H -0.201 1.201
18 H -0.201 1.201
19 C -0.122 4.122
20 H 0.122 0.878
21 C -0.154 4.154
22 C -0.125 4.125
23 H 0.142 0.858
24 C 0.328 3.672
25 O -0.392 6.392
26 O -0.332 6.332
27 C -0.053 4.053
28 C -0.197 4.197
29 C -0.188 4.188
30 H 0.095 0.905
31 H 0.085 0.915
32 H 0.086 0.914
33 H 0.247 0.753
34 H 0.148 0.852
35 H 0.146 0.854
36 H 0.084 0.916
37 H 0.084 0.916
38 H 0.039 0.961
39 H 0.039 0.961
40 H 0.072 0.928
41 H 0.113 0.887
42 H 0.102 0.898
43 H 0.266 0.734
44 H 0.086 0.914
45 H 0.078 0.922
46 H 0.076 0.924
47 H 0.080 0.920
48 H 0.092 0.908
49 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 8.637 -12.058 -22.846 27.239
hybrid contribution -0.330 0.641 0.309 0.784
sum 8.307 -11.417 -22.537 26.594
Atomic orbital electron populations
1.22596 0.94999 1.03355 1.03519 1.20820 0.94101 0.96720 0.83745
0.88529 1.55763 1.84306 1.19646 1.27772 1.05344 0.77645 0.74519
0.73104 1.93567 1.61809 1.60423 1.79407 1.93576 1.80190 1.59119
1.62624 1.30661 1.21097 1.12247 1.10222 1.21502 1.03624 0.97692
0.91711 1.19052 0.89798 0.95631 0.96207 1.21219 0.94591 1.30102
1.10604 0.92439 1.25015 0.95133 0.96599 0.97599 1.69947 0.99518
1.43565 1.40414 0.86618 0.77395 0.80524 0.83259 1.21248 1.20119
1.20118 1.22862 0.95634 1.00501 0.93244 0.87788 1.22988 0.97171
1.04010 0.91225 1.22752 0.96655 0.97238 0.95895 0.85824 1.23415
0.79006 0.88498 0.76268 1.90757 1.65249 1.27969 1.55197 1.84558
1.31988 1.49136 1.67472 1.21827 0.91937 0.97392 0.94166 1.21830
0.97937 0.99933 0.99999 1.21901 1.02175 0.91727 1.02955 0.90523
0.91502 0.91400 0.75250 0.85214 0.85417 0.91602 0.91617 0.96137
0.96120 0.92843 0.88686 0.89768 0.73359 0.91391 0.92194 0.92388
0.91993 0.90760 0.92089
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.49 8.95 37.16 0.33 -1.15 16
2 C 0.15 1.37 1.93 -67.93 -0.13 1.23 16
3 H 0.10 0.99 6.24 -51.93 -0.32 0.67 16
4 N -1.12 -10.97 5.36 -4.89 -0.03 -10.99 16
5 S 2.60 37.15 5.44 -107.50 -0.58 36.56 16
6 O -0.96 -16.50 17.39 -57.54 -1.00 -17.50 16
7 O -0.96 -16.68 18.08 -57.54 -1.04 -17.72 16
8 C -0.61 -9.20 5.36 37.16 0.20 -9.00 16
9 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16
10 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16
11 C -0.53 -14.82 9.11 -34.44 -0.31 -15.14 16
12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16
13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16
14 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16
15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16
16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
19 C -0.10 -0.72 2.81 -89.81 -0.25 -0.97 16
20 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16
21 C -0.12 -0.90 6.86 -25.83 -0.18 -1.08 16
22 C -0.11 -0.74 3.75 -90.87 -0.34 -1.09 16
23 H 0.12 0.63 7.96 -51.93 -0.41 0.21 16
24 C 0.49 4.23 7.58 36.00 0.27 4.50 16
25 O -0.50 -5.67 13.46 -18.75 -0.25 -5.92 16
26 O -0.52 -3.58 13.42 -39.25 -0.53 -4.11 16
27 C -0.05 -0.38 0.67 -153.69 -0.10 -0.48 16
28 C -0.14 -0.81 9.14 37.16 0.34 -0.47 16
29 C -0.13 -1.21 5.98 37.16 0.22 -0.98 16
30 H 0.08 0.54 4.88 -51.93 -0.25 0.28 16
31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.07 0.61 5.91 -51.93 -0.31 0.30 16
33 H 0.41 3.16 8.80 -34.47 -0.30 2.86 16
34 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16
35 H 0.13 1.71 6.68 -51.92 -0.35 1.36 16
36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16
40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
41 H 0.09 0.92 7.54 -51.93 -0.39 0.52 16
42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
43 H 0.41 1.26 9.10 45.56 0.41 1.67 16
44 H 0.07 0.37 7.13 -51.93 -0.37 0.00 16
45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
46 H 0.06 0.27 7.94 -51.93 -0.41 -0.14 16
47 H 0.06 0.66 6.23 -51.93 -0.32 0.34 16
48 H 0.07 0.75 6.99 -51.93 -0.36 0.38 16
49 H 0.06 0.52 5.41 -51.93 -0.28 0.24 16
LS Contribution 395.13 15.07 5.95 5.95
Total: -1.00 -36.84 395.13 -9.11 -45.94
By element:
Atomic # 1 Polarization: 8.69 SS G_CDS: -7.02 Total: 1.67 kcal
Atomic # 6 Polarization: -24.36 SS G_CDS: -0.33 Total: -24.68 kcal
Atomic # 7 Polarization: -37.49 SS G_CDS: 0.71 Total: -36.78 kcal
Atomic # 8 Polarization: -42.42 SS G_CDS: -2.82 Total: -45.24 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal
Atomic # 16 Polarization: 37.15 SS G_CDS: -0.58 Total: 36.56 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -36.84 -9.11 -45.94 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593943928.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -119.137 kcal
(2) G-P(sol) polarization free energy of solvation -36.836 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.973 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.078 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds