Wall clock time and date at job start Wed Apr 1 2020 04:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46672 * 2 1 4 4 N 1.46503 * 109.46848 * 119.99728 * 2 1 3 5 5 S 1.65599 * 119.99783 * 264.99927 * 4 2 1 6 6 O 1.42096 * 104.27952 * 308.92810 * 5 4 2 7 7 O 1.42101 * 104.27679 * 181.07607 * 5 4 2 8 8 C 1.81398 * 104.44942 * 65.00573 * 5 4 2 9 9 C 1.53006 * 109.46859 * 179.97438 * 8 5 4 10 10 C 1.53000 * 109.46722 * 179.97438 * 9 8 5 11 11 C 1.50705 * 109.47023 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99846 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99853 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00040 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99723 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47365 * 179.97438 * 15 13 11 17 17 H 1.48509 * 109.47241 * 299.99680 * 15 13 11 18 18 H 1.48501 * 109.47384 * 59.99456 * 15 13 11 19 19 C 1.52991 * 109.47306 * 239.99915 * 2 1 3 20 20 H 1.09005 * 112.85065 * 294.63249 * 19 2 1 21 21 C 1.53781 * 113.61861 * 163.43802 * 19 2 1 22 22 C 1.53952 * 87.02268 * 220.04854 * 21 19 2 23 23 H 1.08995 * 113.53739 * 270.81003 * 22 21 19 24 24 C 1.50695 * 113.74382 * 139.94140 * 22 21 19 25 25 O 1.20827 * 120.00274 * 262.40197 * 24 22 21 26 26 O 1.34228 * 120.00255 * 82.40340 * 24 22 21 27 27 C 1.53784 * 113.61490 * 65.82918 * 19 2 1 28 28 C 1.53003 * 113.61243 * 254.52820 * 27 19 2 29 29 C 1.52998 * 113.61374 * 25.43509 * 27 19 2 30 30 H 1.08997 * 109.47154 * 66.03375 * 1 2 3 31 31 H 1.08999 * 109.47007 * 186.03364 * 1 2 3 32 32 H 1.08996 * 109.47287 * 306.02709 * 1 2 3 33 33 H 0.97000 * 120.00025 * 85.00826 * 4 2 1 34 34 H 1.08999 * 109.47266 * 60.00054 * 8 5 4 35 35 H 1.09000 * 109.46989 * 299.99216 * 8 5 4 36 36 H 1.08991 * 109.47300 * 59.99805 * 9 8 5 37 37 H 1.09000 * 109.46755 * 299.99452 * 9 8 5 38 38 H 1.09004 * 109.47236 * 59.99774 * 10 9 8 39 39 H 1.08996 * 109.47349 * 300.00026 * 10 9 8 40 40 H 0.97001 * 119.99624 * 179.97438 * 14 13 11 41 41 H 1.09005 * 113.61201 * 334.56789 * 21 19 2 42 42 H 1.08999 * 113.61826 * 105.46534 * 21 19 2 43 43 H 0.96700 * 117.00175 * 179.97438 * 26 24 22 44 44 H 1.08999 * 109.46821 * 60.00268 * 28 27 19 45 45 H 1.09003 * 109.46861 * 180.02562 * 28 27 19 46 46 H 1.08996 * 109.47310 * 299.99938 * 28 27 19 47 47 H 1.08995 * 109.47337 * 60.85063 * 29 27 19 48 48 H 1.08994 * 109.47157 * 180.85351 * 29 27 19 49 49 H 1.09003 * 109.46603 * 300.85018 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1773 2.5505 6 8 3.2874 1.1907 2.0751 7 8 2.8606 -0.8027 3.4766 8 6 0.8407 0.8990 3.0985 9 6 1.0751 1.7342 4.3588 10 6 -0.2503 2.3434 4.8206 11 6 -0.0196 3.1655 6.0624 12 1 0.9729 3.2452 6.4806 13 6 -1.0759 3.8152 6.6652 14 7 -2.2846 3.7178 6.1561 15 14 -0.7898 4.8348 8.2039 16 1 -2.0761 5.4260 8.6523 17 1 -0.2422 3.9674 9.2778 18 1 0.1766 5.9220 7.9049 19 6 2.0400 -0.7212 -1.2491 20 1 1.7864 -1.7813 -1.2591 21 6 3.5187 -0.4387 -1.5631 22 6 3.1093 -0.3793 -3.0460 23 1 3.1493 -1.3461 -3.5477 24 6 3.7996 0.7120 -3.8228 25 8 3.2405 1.7666 -4.0102 26 8 5.0357 0.5126 -4.3066 27 6 1.7015 0.0055 -2.5615 28 6 0.5764 -0.6592 -3.3574 29 6 1.5019 1.5131 -2.3933 30 1 -0.3633 0.4174 -0.9390 31 1 -0.3633 -1.0220 0.1080 32 1 -0.3633 0.6044 0.8311 33 1 2.1110 -1.6561 1.1950 34 1 0.1315 0.1010 3.3185 35 1 0.4386 1.5353 2.3101 36 1 1.7843 2.5321 4.1393 37 1 1.4769 1.0975 5.1470 38 1 -0.9600 1.5457 5.0401 39 1 -0.6518 2.9801 4.0323 40 1 -3.0278 4.1745 6.5804 41 1 3.8743 0.5137 -1.1699 42 1 4.1822 -1.2702 -1.3253 43 1 5.4375 1.2416 -4.7987 44 1 -0.3312 -0.6813 -2.7543 45 1 0.3930 -0.0921 -4.2701 46 1 0.8664 -1.6777 -3.6152 47 1 2.4207 1.9613 -2.0153 48 1 1.2513 1.9561 -3.3571 49 1 0.6915 1.6957 -1.6877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593943928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:12 Heat of formation + Delta-G solvation = -192.464064 kcal Electronic energy + Delta-G solvation = -29729.628850 eV Core-core repulsion = 25589.754308 eV Total energy + Delta-G solvation = -4139.874542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.29643 -40.12597 -38.18348 -37.13409 -37.03596 -36.49817 -36.34816 -34.17469 -32.00500 -30.71385 -29.67502 -28.30259 -27.96321 -25.63407 -24.20760 -23.24811 -22.39717 -21.87451 -20.49985 -19.46265 -19.05154 -18.64916 -18.25872 -17.72267 -17.18836 -17.12127 -16.69697 -16.55024 -16.36861 -15.76433 -15.72097 -14.95622 -14.77548 -14.55523 -14.49400 -14.15715 -14.06401 -13.90692 -13.53305 -13.26835 -13.20022 -13.17726 -13.12994 -13.09506 -12.93222 -12.76952 -12.73036 -12.62784 -12.56845 -12.37356 -12.19455 -12.15579 -12.05585 -11.80912 -11.73996 -11.38616 -11.26436 -11.13898 -10.95539 -10.77497 -10.57269 -10.30213 -8.22907 -6.33824 -0.72043 1.23935 1.39668 1.42138 1.50064 1.78685 2.22073 2.39462 2.76045 3.10547 3.22487 3.28063 3.39643 3.65084 3.68572 3.75880 3.92380 4.08614 4.25982 4.27721 4.36925 4.37986 4.46431 4.54209 4.60232 4.65158 4.70917 4.75697 4.88081 4.92880 4.98363 5.01679 5.04164 5.06105 5.15642 5.19416 5.23943 5.34609 5.43798 5.45381 5.55504 5.59469 5.63043 5.75916 5.79195 6.19551 6.23008 6.81490 7.05578 7.35341 8.88349 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.002363 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.256008 B =11848.280181 C =12183.539684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.146 3.854 3 H 0.078 0.922 4 N -1.098 6.098 5 S 2.626 3.374 6 O -0.992 6.992 7 O -0.992 6.992 8 C -0.612 4.612 9 C -0.106 4.106 10 C 0.033 3.967 11 C -0.554 4.554 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.929 5.929 15 Si 0.962 3.038 16 H -0.280 1.280 17 H -0.267 1.267 18 H -0.268 1.268 19 C -0.093 4.093 20 H 0.136 0.864 21 C -0.123 4.123 22 C -0.102 4.102 23 H 0.153 0.847 24 C 0.483 3.517 25 O -0.538 6.538 26 O -0.518 6.518 27 C -0.052 4.052 28 C -0.137 4.137 29 C -0.128 4.128 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.429 0.571 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.004 0.996 39 H 0.003 0.997 40 H 0.265 0.735 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.423 0.577 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.038 0.962 48 H 0.060 0.940 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.464 -14.216 -24.127 29.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.039 3.961 3 H 0.096 0.904 4 N -0.859 5.859 5 S 2.721 3.279 6 O -0.981 6.981 7 O -0.983 6.983 8 C -0.743 4.743 9 C -0.145 4.145 10 C -0.006 4.006 11 C -0.592 4.592 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.786 3.214 16 H -0.206 1.206 17 H -0.192 1.192 18 H -0.193 1.193 19 C -0.112 4.112 20 H 0.153 0.847 21 C -0.161 4.161 22 C -0.121 4.121 23 H 0.171 0.829 24 C 0.327 3.673 25 O -0.428 6.428 26 O -0.332 6.332 27 C -0.053 4.053 28 C -0.194 4.194 29 C -0.185 4.185 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.266 0.734 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.284 0.716 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.846 -13.935 -23.575 28.779 hybrid contribution -0.355 1.238 0.441 1.361 sum 8.491 -12.698 -23.134 27.722 Atomic orbital electron populations 1.22623 0.93939 1.04453 1.03628 1.20987 0.94961 0.96150 0.83971 0.90370 1.55289 1.83996 1.20230 1.26403 1.04266 0.76670 0.73759 0.73227 1.93535 1.62767 1.61836 1.80010 1.93534 1.80661 1.59748 1.64314 1.30649 1.22760 1.12548 1.08333 1.21308 1.00770 0.98314 0.94157 1.18944 0.91955 0.94722 0.94950 1.21717 0.94859 1.30741 1.11864 0.92261 1.25922 0.94852 0.97786 1.00930 1.70060 1.00356 1.44513 1.41959 0.85552 0.77607 0.78967 0.79273 1.20567 1.19191 1.19328 1.22911 0.94788 1.01825 0.91700 0.84651 1.22989 0.98020 1.03259 0.91801 1.22882 0.95972 0.97859 0.95348 0.82942 1.23819 0.79220 0.88417 0.75841 1.90752 1.66109 1.29345 1.56590 1.84525 1.31298 1.49953 1.67392 1.21782 0.92932 0.95875 0.94687 1.21824 0.97474 1.00677 0.99414 1.21830 1.01057 0.93585 1.02062 0.89526 0.89583 0.92595 0.73383 0.83305 0.83932 0.91811 0.91610 0.97777 0.97897 0.92613 0.91355 0.88263 0.71633 0.90788 0.93005 0.90338 0.94261 0.92070 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 8.95 71.98 0.64 -1.95 16 2 C 0.15 2.36 1.93 44.99 0.09 2.44 16 3 H 0.08 1.59 6.24 -2.38 -0.01 1.58 16 4 N -1.10 -19.37 5.36 -169.39 -0.91 -20.28 16 5 S 2.63 73.15 5.44 -56.49 -0.31 72.84 16 6 O -0.99 -34.07 17.39 -127.65 -2.22 -36.29 16 7 O -0.99 -33.37 18.08 -127.65 -2.31 -35.68 16 8 C -0.61 -18.18 5.36 71.98 0.39 -17.80 16 9 C -0.11 -4.34 5.16 30.60 0.16 -4.18 16 10 C 0.03 1.68 4.97 29.85 0.15 1.83 16 11 C -0.55 -31.65 9.11 25.60 0.23 -31.41 16 12 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 15 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C -0.09 -1.05 2.81 -10.27 -0.03 -1.07 16 20 H 0.14 0.76 8.10 -2.38 -0.02 0.74 16 21 C -0.12 -1.69 6.86 31.18 0.21 -1.48 16 22 C -0.10 -1.22 3.75 -10.96 -0.04 -1.26 16 23 H 0.15 0.96 7.96 -2.39 -0.02 0.94 16 24 C 0.48 8.09 7.58 71.23 0.54 8.63 16 25 O -0.54 -12.36 13.46 21.96 0.30 -12.07 16 26 O -0.52 -6.57 13.42 -51.40 -0.69 -7.26 16 27 C -0.05 -0.65 0.67 -51.65 -0.03 -0.68 16 28 C -0.14 -1.20 9.14 71.98 0.66 -0.54 16 29 C -0.13 -2.39 5.98 71.98 0.43 -1.96 16 30 H 0.09 1.04 4.88 -2.39 -0.01 1.02 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.92 5.91 -2.39 -0.01 0.90 16 33 H 0.43 5.25 8.80 -96.74 -0.85 4.40 16 34 H 0.15 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.14 3.78 6.68 -2.39 -0.02 3.76 16 36 H 0.06 2.57 8.14 -2.39 -0.02 2.56 16 37 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 39 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.07 1.33 7.54 -2.38 -0.02 1.31 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.42 2.29 9.10 -74.06 -0.67 1.62 16 44 H 0.07 0.57 7.13 -2.39 -0.02 0.56 16 45 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.08 0.39 7.94 -2.39 -0.02 0.38 16 47 H 0.04 0.89 6.23 -2.39 -0.01 0.88 16 48 H 0.06 1.28 6.99 -2.39 -0.02 1.26 16 49 H 0.06 1.09 5.41 -2.39 -0.01 1.08 16 Total: -1.00 -80.81 395.13 -0.52 -81.33 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -0.55 Total: 15.29 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 3.86 Total: -48.78 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -0.62 Total: -75.75 kcal Atomic # 8 Polarization: -86.37 SS G_CDS: -4.92 Total: -91.30 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 73.15 SS G_CDS: -0.31 Total: 72.84 kcal Total: -80.81 -0.52 -81.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593943928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.137 kcal (2) G-P(sol) polarization free energy of solvation -80.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds