Wall clock time and date at job start Wed Apr 1 2020 04:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46664 * 2 1 4 4 C 1.50700 * 109.47303 * 119.99559 * 2 1 3 5 5 O 1.21287 * 119.99686 * 120.00067 * 4 2 1 6 6 N 1.34772 * 120.00347 * 300.00198 * 4 2 1 7 7 C 1.39575 * 120.00307 * 179.97438 * 6 4 2 8 8 N 1.32280 * 119.72541 * 0.26782 * 7 6 4 9 9 C 1.31949 * 121.69046 * 180.31439 * 8 7 6 10 10 C 1.38093 * 120.95751 * 359.70302 * 9 8 7 11 11 C 1.38775 * 119.35014 * 0.02562 * 10 9 8 12 12 C 1.38801 * 118.45049 * 359.97438 * 11 10 9 13 13 O 1.35973 * 120.50120 * 180.02562 * 12 11 10 14 14 C 1.42906 * 116.99594 * 0.02562 * 13 12 11 15 15 C 1.53006 * 109.46752 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00302 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99832 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47310 * 89.99428 * 20 18 16 22 22 H 1.48491 * 109.47296 * 209.99911 * 20 18 16 23 23 H 1.48502 * 109.46905 * 329.99956 * 20 18 16 24 24 C 1.53000 * 109.47249 * 240.00061 * 2 1 3 25 25 H 1.08998 * 110.21521 * 186.92722 * 24 2 1 26 26 C 1.54483 * 110.24500 * 64.99513 * 24 2 1 27 27 C 1.54629 * 101.76545 * 215.58651 * 26 24 2 28 28 C 1.51285 * 104.19257 * 24.80007 * 27 26 24 29 29 O 1.21284 * 124.93951 * 163.78665 * 28 27 26 30 30 N 1.34415 * 110.11885 * 343.74418 * 28 27 26 31 31 H 1.08992 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46612 * 299.99845 * 1 2 3 33 33 H 1.08990 * 109.47293 * 60.00132 * 1 2 3 34 34 H 0.97000 * 120.00052 * 0.02562 * 6 4 2 35 35 H 1.08000 * 119.52717 * 179.68478 * 9 8 7 36 36 H 1.07997 * 120.32695 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.77596 * 180.02562 * 11 10 9 38 38 H 1.08993 * 109.47732 * 59.99966 * 14 13 12 39 39 H 1.09000 * 109.47141 * 299.99605 * 14 13 12 40 40 H 1.09000 * 109.47050 * 299.99753 * 15 14 13 41 41 H 1.09001 * 109.46801 * 59.99865 * 15 14 13 42 42 H 0.97002 * 119.99998 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.97070 * 333.70972 * 26 24 2 44 44 H 1.08998 * 110.96767 * 97.46801 * 26 24 2 45 45 H 1.08993 * 110.48537 * 143.47682 * 27 26 24 46 46 H 1.08999 * 110.48427 * 266.12488 * 27 26 24 47 47 H 0.96995 * 124.35083 * 179.57197 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7069 -0.2499 2.4546 7 6 2.1717 -0.9080 3.5942 8 7 2.9359 -1.9802 3.4666 9 6 3.3915 -2.6357 4.5172 10 6 3.0904 -2.2202 5.7992 11 6 2.2962 -1.0968 5.9812 12 6 1.8309 -0.4269 4.8581 13 8 1.0502 0.6788 4.9881 14 6 0.7431 1.1033 6.3176 15 6 -0.1376 2.3534 6.2631 16 6 -0.4620 2.8007 7.6651 17 1 -0.0788 2.2485 8.5105 18 6 -1.2480 3.9151 7.8687 19 7 -1.5316 4.3052 9.0922 20 14 -1.9114 4.8699 6.4065 21 1 -3.2318 4.3167 6.0119 22 1 -2.0644 6.2996 6.7772 23 1 -0.9652 4.7522 5.2680 24 6 2.0401 -0.7212 -1.2492 25 1 3.1229 -0.8364 -1.2019 26 6 1.6407 0.0622 -2.5193 27 6 1.3612 -1.0822 -3.5209 28 6 1.0069 -2.2636 -2.6448 29 8 0.4553 -3.2729 -3.0295 30 7 1.3932 -2.0323 -1.3783 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.1489 0.5386 2.5436 35 1 4.0088 -3.5100 4.3725 36 1 3.4691 -2.7641 6.6519 37 1 2.0467 -0.7513 6.9736 38 1 1.6669 1.3331 6.8483 39 1 0.2125 0.3072 6.8398 40 1 0.3934 3.1494 5.7410 41 1 -1.0615 2.1240 5.7323 42 1 -2.0843 5.0894 9.2354 43 1 0.7434 0.6561 -2.3453 44 1 2.4617 0.6907 -2.8643 45 1 0.5249 -0.8247 -4.1707 46 1 2.2517 -1.2985 -4.1111 47 1 1.2611 -2.6521 -0.6440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599282538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:55 Heat of formation + Delta-G solvation = -93.404018 kcal Electronic energy + Delta-G solvation = -30166.661621 eV Core-core repulsion = 25927.931444 eV Total energy + Delta-G solvation = -4238.730177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23401 -41.53051 -40.29312 -39.14525 -37.80136 -36.00479 -35.39328 -34.01200 -33.07024 -32.39567 -32.14126 -30.41018 -27.97846 -27.32151 -25.97143 -24.55066 -23.90937 -22.66121 -22.00535 -21.58222 -20.83283 -19.68871 -19.15080 -18.28502 -18.18113 -17.97464 -17.57857 -17.21544 -16.96158 -16.34929 -16.27249 -16.06585 -15.73322 -15.35486 -15.24982 -15.17927 -14.74402 -14.71331 -14.48059 -14.30669 -14.13085 -13.77282 -13.44895 -13.36219 -13.18409 -12.87808 -12.78307 -12.70529 -12.53649 -12.19549 -12.12230 -11.87323 -11.80657 -11.75976 -11.64309 -11.46657 -11.22098 -10.92487 -10.79731 -10.43280 -10.17885 -10.08550 -8.88214 -8.32547 -6.39865 0.06515 0.25428 1.39528 1.40912 1.52588 1.59061 1.63217 1.81570 2.07969 2.35465 2.43283 2.85295 3.03195 3.21134 3.43070 3.49865 3.67728 3.79904 3.82506 3.99379 4.04596 4.11962 4.23440 4.26035 4.28497 4.29104 4.40735 4.44275 4.66907 4.74840 4.79488 4.86157 4.89425 4.93526 5.06138 5.12438 5.14827 5.17584 5.25576 5.33311 5.35350 5.48180 5.58187 5.82209 6.08188 6.16859 6.21107 6.25977 6.67021 6.91056 7.22157 7.25559 7.26030 8.83020 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.002598 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.102636 B =10773.503783 C =12914.321795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 H 0.152 0.848 4 C 0.503 3.497 5 O -0.514 6.514 6 N -0.648 5.648 7 C 0.314 3.686 8 N -0.470 5.470 9 C 0.074 3.926 10 C -0.148 4.148 11 C -0.151 4.151 12 C 0.043 3.957 13 O -0.322 6.322 14 C 0.086 3.914 15 C -0.004 4.004 16 C -0.537 4.537 17 H 0.040 0.960 18 C 0.010 3.990 19 N -0.945 5.945 20 Si 0.950 3.050 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.240 1.240 24 C 0.146 3.854 25 H 0.088 0.912 26 C -0.117 4.117 27 C -0.147 4.147 28 C 0.504 3.496 29 O -0.600 6.600 30 N -0.716 5.716 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.429 0.571 35 H 0.183 0.817 36 H 0.170 0.830 37 H 0.151 0.849 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.269 0.731 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.382 -6.304 -21.808 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 H 0.169 0.831 4 C 0.290 3.710 5 O -0.386 6.386 6 N -0.297 5.297 7 C 0.082 3.918 8 N -0.186 5.186 9 C -0.083 4.083 10 C -0.169 4.169 11 C -0.178 4.178 12 C -0.008 4.008 13 O -0.235 6.235 14 C 0.012 3.988 15 C -0.042 4.042 16 C -0.575 4.575 17 H 0.058 0.942 18 C -0.188 4.188 19 N -0.585 5.585 20 Si 0.773 3.227 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.164 1.164 24 C 0.041 3.959 25 H 0.106 0.894 26 C -0.155 4.155 27 C -0.187 4.187 28 C 0.293 3.707 29 O -0.482 6.482 30 N -0.368 5.368 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.268 0.732 35 H 0.200 0.800 36 H 0.188 0.812 37 H 0.169 0.831 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.142 0.858 45 H 0.132 0.868 46 H 0.137 0.863 47 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 9.648 -7.435 -23.140 26.150 hybrid contribution -0.936 0.504 2.020 2.283 sum 8.712 -6.931 -21.120 23.874 Atomic orbital electron populations 1.21857 0.91469 1.02424 1.04732 1.21791 0.98793 1.02607 0.89845 0.83073 1.21559 0.79844 0.84882 0.84682 1.90792 1.35903 1.25687 1.86227 1.43592 1.51430 1.31134 1.03515 1.18025 0.96827 0.92714 0.84255 1.67686 1.10144 1.05800 1.34929 1.22998 0.98558 0.99482 0.87241 1.22250 0.98420 0.96515 0.99691 1.21890 0.99977 0.97427 0.98510 1.19691 0.96746 0.90548 0.93818 1.85961 1.64669 1.40607 1.32274 1.22749 0.99039 0.97146 0.79873 1.19428 0.95589 0.93135 0.96012 1.21126 1.32165 1.12186 0.91988 0.94160 1.25930 0.95854 0.98117 0.98877 1.70038 1.39052 1.26586 1.22798 0.85663 0.79743 0.77396 0.79930 1.19166 1.21116 1.16354 1.21688 0.97691 0.81698 0.94854 0.89405 1.22868 1.05503 0.96512 0.90580 1.22390 1.05589 0.92363 0.98383 1.21745 0.76123 0.88550 0.84313 1.90718 1.45763 1.33421 1.78274 1.46518 1.59210 1.20751 1.10355 0.93954 0.91106 0.88317 0.73153 0.79986 0.81226 0.83095 0.92091 0.92258 0.94854 0.95167 0.92237 0.87600 0.85757 0.86766 0.86350 0.76110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.65 71.98 0.62 -1.01 16 2 C -0.11 -1.25 2.58 -11.54 -0.03 -1.28 16 3 H 0.15 0.76 8.14 -2.38 -0.02 0.74 16 4 C 0.50 10.80 6.95 87.66 0.61 11.41 16 5 O -0.51 -14.70 13.29 -3.05 -0.04 -14.74 16 6 N -0.65 -15.14 5.28 -308.02 -1.63 -16.76 16 7 C 0.31 9.05 7.45 132.98 0.99 10.04 16 8 N -0.47 -13.88 7.88 -192.58 -1.52 -15.39 16 9 C 0.07 1.72 11.17 84.64 0.95 2.67 16 10 C -0.15 -3.10 10.10 22.36 0.23 -2.87 16 11 C -0.15 -3.89 9.14 22.53 0.21 -3.68 16 12 C 0.04 1.25 6.72 22.70 0.15 1.40 16 13 O -0.32 -10.19 9.38 -93.25 -0.88 -11.06 16 14 C 0.09 3.06 4.70 71.98 0.34 3.40 16 15 C 0.00 -0.18 4.41 29.85 0.13 -0.04 16 16 C -0.54 -28.60 9.66 25.60 0.25 -28.36 16 17 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 18 C 0.01 0.56 5.47 84.65 0.46 1.02 16 19 N -0.95 -56.22 13.96 21.45 0.30 -55.92 16 20 Si 0.95 40.86 27.47 68.60 1.88 42.75 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 24 C 0.15 1.69 2.72 45.44 0.12 1.82 16 25 H 0.09 1.15 7.91 -2.39 -0.02 1.13 16 26 C -0.12 -0.52 6.53 31.65 0.21 -0.31 16 27 C -0.15 -1.41 6.86 30.59 0.21 -1.20 16 28 C 0.50 10.57 8.43 87.90 0.74 11.31 16 29 O -0.60 -19.01 18.03 -3.04 -0.05 -19.07 16 30 N -0.72 -13.41 4.54 -439.43 -1.99 -15.41 16 31 H 0.04 0.67 7.43 -2.39 -0.02 0.65 16 32 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 33 H 0.10 0.63 6.36 -2.39 -0.02 0.61 16 34 H 0.43 8.42 7.46 -92.71 -0.69 7.73 16 35 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.15 3.66 6.44 -2.91 -0.02 3.64 16 38 H 0.06 2.11 7.70 -2.39 -0.02 2.09 16 39 H 0.06 2.06 7.70 -2.39 -0.02 2.05 16 40 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 41 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 42 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.11 0.18 6.12 -2.39 -0.01 0.17 16 44 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.40 9.33 8.12 -92.71 -0.75 8.58 16 Total: -1.00 -79.47 384.68 1.79 -77.69 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.47 Total: 23.62 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.18 Total: 4.31 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.84 Total: -103.49 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.97 Total: -44.87 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.75 kcal Total: -79.47 1.79 -77.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599282538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.716 kcal (2) G-P(sol) polarization free energy of solvation -79.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds