Wall clock time and date at job start Wed Apr 1 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47046 * 2 1 4 4 C 1.50699 * 109.47131 * 239.99815 * 2 1 3 5 5 O 1.21277 * 119.99796 * 239.99917 * 4 2 1 6 6 N 1.34774 * 119.99826 * 60.00145 * 4 2 1 7 7 C 1.46495 * 120.00037 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.47373 * 180.02562 * 7 6 4 9 9 C 1.38246 * 119.97133 * 269.72749 * 8 7 6 10 10 C 1.38203 * 120.02273 * 179.72602 * 9 8 7 11 11 C 1.38464 * 119.97369 * 0.56568 * 10 9 8 12 12 F 1.35095 * 120.02384 * 179.68100 * 11 10 9 13 13 C 1.38462 * 119.94446 * 359.70894 * 11 10 9 14 14 C 1.38190 * 119.97783 * 359.97438 * 13 11 10 15 15 N 1.46502 * 109.47193 * 119.99690 * 2 1 3 16 16 C 1.35322 * 125.86299 * 34.71782 * 15 2 1 17 17 C 1.35351 * 106.16806 * 180.26356 * 16 15 2 18 18 C 1.50701 * 126.74701 * 180.02562 * 17 16 15 19 19 N 1.46507 * 109.47124 * 95.00142 * 18 17 16 20 20 C 1.36936 * 119.99778 * 179.97438 * 19 18 17 21 21 H 1.07992 * 120.00122 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99419 * 179.97438 * 20 19 18 23 23 N 1.31613 * 119.99816 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00280 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46922 * 89.99282 * 24 22 20 26 26 H 1.48496 * 109.47394 * 209.99636 * 24 22 20 27 27 H 1.48501 * 109.47219 * 330.00098 * 24 22 20 28 28 N 1.33769 * 106.50107 * 0.02562 * 17 16 15 29 29 N 1.28629 * 108.88659 * 359.97438 * 28 17 16 30 30 H 1.09003 * 109.47376 * 59.99681 * 1 2 3 31 31 H 1.09007 * 109.47364 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47475 * 300.00269 * 1 2 3 33 33 H 0.96999 * 120.00228 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.47677 * 300.00130 * 7 6 4 35 35 H 1.09011 * 109.47241 * 60.00059 * 7 6 4 36 36 H 1.08001 * 119.99276 * 359.97438 * 9 8 7 37 37 H 1.08002 * 120.01378 * 180.25728 * 10 9 8 38 38 H 1.07999 * 120.00923 * 179.97438 * 13 11 10 39 39 H 1.08000 * 119.98958 * 180.02562 * 14 13 11 40 40 H 1.07991 * 126.91601 * 0.22443 * 16 15 2 41 41 H 1.08998 * 109.47347 * 215.00053 * 18 17 16 42 42 H 1.08998 * 109.47646 * 335.00195 * 18 17 16 43 43 H 0.96998 * 119.99819 * 359.97438 * 19 18 17 44 44 H 0.96997 * 120.00107 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7295 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 6 2.1955 -0.9402 -3.6506 8 6 1.6936 -0.2296 -4.8811 9 6 0.4885 -0.5991 -5.4489 10 6 0.0245 0.0557 -6.5740 11 6 0.7727 1.0743 -7.1395 12 9 0.3232 1.7108 -8.2431 13 6 1.9823 1.4397 -6.5732 14 6 2.4411 0.7879 -5.4443 15 7 2.0183 -0.6906 1.1962 16 6 1.4327 -1.7554 1.7915 17 6 2.2078 -2.0649 2.8571 18 6 1.9798 -3.1807 3.8441 19 7 2.7494 -4.3586 3.4359 20 6 2.6989 -5.5031 4.1860 21 1 2.0922 -5.5373 5.0787 22 6 3.4278 -6.6193 3.7989 23 7 3.3789 -7.7195 4.5195 24 14 4.4778 -6.5599 2.2551 25 1 5.8447 -6.0960 2.6038 26 1 4.5534 -7.9162 1.6552 27 1 3.8703 -5.6200 1.2790 28 7 3.2159 -1.1856 2.8618 29 7 3.0748 -0.3850 1.8650 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1488 0.5385 -2.5435 34 1 3.2855 -0.9399 -3.6506 35 1 1.8325 -1.9681 -3.6508 36 1 -0.0926 -1.3971 -5.0107 37 1 -0.9190 -0.2303 -7.0150 38 1 2.5669 2.2338 -7.0136 39 1 3.3843 1.0730 -5.0022 40 1 0.5286 -2.2569 1.4796 41 1 2.3029 -2.8611 4.8348 42 1 0.9193 -3.4311 3.8710 43 1 3.2947 -4.3277 2.6342 44 1 3.8885 -8.4994 4.2492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603184984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:12 Heat of formation + Delta-G solvation = 38.975841 kcal Electronic energy + Delta-G solvation = -28795.574529 eV Core-core repulsion = 24471.417220 eV Total energy + Delta-G solvation = -4324.157309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.95571 -44.34609 -41.23051 -40.04433 -37.16515 -36.24703 -36.16687 -33.93069 -32.64280 -32.16101 -32.02046 -31.28391 -28.06025 -27.30056 -25.89383 -24.35650 -24.07852 -23.44925 -22.49375 -22.32835 -21.41391 -19.93947 -19.19271 -18.65956 -18.27774 -17.51964 -17.08189 -17.01137 -16.62658 -16.58855 -16.51575 -16.07172 -16.02290 -15.61012 -15.16810 -14.98456 -14.86264 -14.66408 -14.50763 -14.44892 -13.98485 -13.91825 -13.58017 -13.44442 -13.40282 -13.31166 -12.94343 -12.78550 -12.68586 -12.57135 -12.16814 -12.01068 -11.87754 -11.83831 -11.68846 -11.04057 -10.90724 -10.35140 -10.24286 -10.12117 -9.72353 -9.32719 -8.04449 -5.36512 -0.06536 0.22041 0.50251 1.21078 1.28191 1.32731 1.36165 1.41749 1.45262 1.98432 2.44888 2.60029 3.23050 3.23828 3.27185 3.39530 3.51737 3.56495 3.67360 3.69864 3.82134 3.93256 3.95013 4.12344 4.16190 4.26387 4.45762 4.55695 4.57368 4.61401 4.66936 4.82061 4.93132 4.94005 5.05366 5.10202 5.11794 5.13138 5.16729 5.19054 5.44258 5.56066 5.74120 5.83094 6.19893 6.27987 6.96789 7.03609 7.46010 7.79519 7.99010 9.16686 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.002070 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.960891 B =13523.195505 C =14628.098614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.167 0.833 4 C 0.505 3.495 5 O -0.572 6.572 6 N -0.695 5.695 7 C 0.164 3.836 8 C -0.117 4.117 9 C -0.066 4.066 10 C -0.157 4.157 11 C 0.088 3.912 12 F -0.150 7.150 13 C -0.158 4.158 14 C -0.069 4.069 15 N -0.272 5.272 16 C -0.006 4.006 17 C -0.043 4.043 18 C 0.239 3.761 19 N -0.755 5.755 20 C -0.227 4.227 21 H 0.073 0.927 22 C -0.054 4.054 23 N -0.976 5.976 24 Si 0.944 3.056 25 H -0.287 1.287 26 H -0.286 1.286 27 H -0.270 1.270 28 N -0.293 5.293 29 N -0.105 5.105 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.423 0.577 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.222 0.778 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 26.503 -27.936 40.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 H 0.184 0.816 4 C 0.289 3.711 5 O -0.451 6.451 6 N -0.349 5.349 7 C 0.041 3.959 8 C -0.118 4.118 9 C -0.085 4.085 10 C -0.176 4.176 11 C 0.069 3.931 12 F -0.128 7.128 13 C -0.177 4.177 14 C -0.088 4.088 15 N -0.066 5.066 16 C -0.158 4.158 17 C -0.181 4.181 18 C 0.112 3.888 19 N -0.401 5.401 20 C -0.358 4.358 21 H 0.091 0.909 22 C -0.246 4.246 23 N -0.627 5.627 24 Si 0.773 3.227 25 H -0.213 1.213 26 H -0.212 1.212 27 H -0.195 1.195 28 N -0.161 5.161 29 N -0.084 5.084 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.261 0.739 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.238 0.762 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.192 0.808 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.607 26.689 -27.645 40.141 hybrid contribution -0.004 -0.736 -1.179 1.390 sum -11.611 25.953 -28.824 40.487 Atomic orbital electron populations 1.22322 0.86027 1.05687 1.07528 1.22019 0.99893 0.98270 0.78194 0.81557 1.20807 0.80169 0.84359 0.85773 1.90886 1.39019 1.28115 1.87030 1.45712 1.53300 1.32472 1.03436 1.20153 0.99349 0.95716 0.80690 1.19773 0.96233 0.98361 0.97422 1.21174 0.94743 0.98599 0.93955 1.21380 1.01786 0.96442 0.97986 1.18110 0.95096 0.94619 0.85308 1.91496 1.89226 1.80930 1.51195 1.21354 0.95564 1.02849 0.97939 1.21152 0.99932 0.93641 0.94045 1.47179 1.16876 1.21927 1.20630 1.23641 1.03798 0.92934 0.95436 1.22236 0.94727 1.00344 1.00785 1.18946 0.96064 0.81015 0.92782 1.42757 1.56757 1.10823 1.29721 1.19087 1.22445 0.89206 1.05083 0.90902 1.25284 1.01959 0.95804 1.01550 1.69830 1.47372 1.03656 1.41850 0.85572 0.79348 0.76677 0.81082 1.21346 1.21221 1.19527 1.74996 1.21977 1.04809 1.14273 1.78118 1.05019 1.22230 1.03019 0.85100 0.90546 0.88618 0.73867 0.91106 0.90600 0.83024 0.83183 0.83349 0.83425 0.76153 0.94370 0.91209 0.80826 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 8.72 71.98 0.63 -0.01 16 2 C 0.12 1.60 3.66 44.24 0.16 1.76 16 3 H 0.17 1.25 8.14 -2.39 -0.02 1.23 16 4 C 0.50 8.78 7.22 87.66 0.63 9.41 16 5 O -0.57 -17.92 16.42 -3.02 -0.05 -17.97 16 6 N -0.70 -5.71 5.44 -466.79 -2.54 -8.25 16 7 C 0.16 1.66 5.80 85.63 0.50 2.16 16 8 C -0.12 -0.79 5.25 -19.86 -0.10 -0.89 16 9 C -0.07 -0.38 9.70 22.26 0.22 -0.17 16 10 C -0.16 -1.15 10.03 22.32 0.22 -0.93 16 11 C 0.09 0.89 7.30 22.38 0.16 1.05 16 12 F -0.15 -2.00 17.27 44.97 0.78 -1.22 16 13 C -0.16 -1.23 10.03 22.31 0.22 -1.00 16 14 C -0.07 -0.44 9.70 22.26 0.22 -0.23 16 15 N -0.27 -7.09 2.75 -330.75 -0.91 -8.00 16 16 C -0.01 -0.18 10.61 83.49 0.89 0.70 16 17 C -0.04 -1.61 6.61 41.60 0.28 -1.34 16 18 C 0.24 9.97 6.82 85.63 0.58 10.55 16 19 N -0.76 -39.00 5.40 -347.17 -1.87 -40.88 16 20 C -0.23 -13.57 10.47 84.04 0.88 -12.69 16 21 H 0.07 4.57 8.06 -2.91 -0.02 4.55 16 22 C -0.05 -3.34 5.50 84.86 0.47 -2.87 16 23 N -0.98 -64.20 13.97 21.65 0.30 -63.89 16 24 Si 0.94 50.06 27.74 68.60 1.90 51.96 16 25 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 26 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.27 -13.84 6.52 99.48 0.65 -13.19 16 28 N -0.29 -12.02 12.41 -48.60 -0.60 -12.62 16 29 N -0.11 -3.67 13.16 37.02 0.49 -3.18 16 30 H 0.13 -0.49 7.56 -2.39 -0.02 -0.51 16 31 H 0.08 0.44 7.17 -2.38 -0.02 0.43 16 32 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.42 0.21 7.88 -92.71 -0.73 -0.52 16 34 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 35 H 0.08 0.94 8.08 -2.38 -0.02 0.93 16 36 H 0.15 0.41 8.06 -2.91 -0.02 0.39 16 37 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 38 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.22 4.48 7.30 -2.92 -0.02 4.46 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.36 19.07 5.52 -92.71 -0.51 18.55 16 44 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -91.25 385.47 3.20 -88.05 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -0.24 Total: 10.50 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.95 Total: 5.50 kcal Atomic # 7 Polarization: -131.68 SS G_CDS: -5.14 Total: -136.82 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.97 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 1.90 Total: 51.96 kcal Total: -91.25 3.20 -88.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603184984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.028 kcal (2) G-P(sol) polarization free energy of solvation -91.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds