Wall clock time and date at job start Wed Apr 1 2020 04:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99431 * 2 1 4 4 O 1.21287 * 120.00161 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99988 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.47403 * 180.02562 * 5 3 2 7 7 C 1.38284 * 119.92748 * 89.99730 * 6 5 3 8 8 C 1.38099 * 120.08079 * 180.02562 * 7 6 5 9 9 C 1.38932 * 119.92071 * 0.02562 * 8 7 6 10 10 N 1.39723 * 120.07522 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00096 * 35.09959 * 10 9 8 12 12 O 1.21379 * 119.99741 * 355.31377 * 11 10 9 13 13 C 1.49346 * 120.00028 * 175.31536 * 11 10 9 14 14 O 1.21360 * 120.00320 * 5.91919 * 13 11 10 15 15 N 1.34775 * 120.00274 * 185.92850 * 13 11 10 16 16 C 1.46502 * 119.99878 * 356.42291 * 15 13 11 17 17 C 1.46495 * 120.00444 * 176.43341 * 15 13 11 18 18 H 1.09004 * 109.47268 * 359.97438 * 17 15 13 19 19 C 1.53006 * 109.47043 * 239.99362 * 17 15 13 20 20 C 1.50698 * 109.47490 * 119.99357 * 17 15 13 21 21 H 1.07995 * 120.00258 * 359.97438 * 20 17 15 22 22 C 1.37887 * 119.99953 * 180.02562 * 20 17 15 23 23 N 1.31512 * 119.99895 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 119.99867 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.46970 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47056 * 119.99521 * 24 22 20 27 27 H 1.48502 * 109.46917 * 239.99666 * 24 22 20 28 28 C 1.38930 * 119.84788 * 0.25211 * 9 8 7 29 29 C 1.38097 * 119.92268 * 359.47449 * 28 9 8 30 30 H 1.08993 * 109.47072 * 299.99715 * 1 2 3 31 31 H 1.08992 * 109.47222 * 60.00163 * 1 2 3 32 32 H 1.09009 * 109.46656 * 180.02562 * 1 2 3 33 33 H 0.96994 * 120.00373 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47431 * 59.99917 * 5 3 2 35 35 H 1.09005 * 109.47083 * 299.99923 * 5 3 2 36 36 H 1.08003 * 119.96219 * 0.02562 * 7 6 5 37 37 H 1.07996 * 120.03875 * 180.02562 * 8 7 6 38 38 H 0.96997 * 119.99679 * 215.09622 * 10 9 8 39 39 H 1.09007 * 109.47252 * 275.99039 * 16 15 13 40 40 H 1.09000 * 109.47092 * 35.98225 * 16 15 13 41 41 H 1.08995 * 109.47364 * 155.99076 * 16 15 13 42 42 H 1.08995 * 109.46977 * 299.99919 * 19 17 15 43 43 H 1.08996 * 109.46761 * 59.99826 * 19 17 15 44 44 H 1.08998 * 109.47062 * 179.97438 * 19 17 15 45 45 H 0.97000 * 120.00054 * 180.02562 * 23 22 20 46 46 H 1.07998 * 120.04077 * 179.72242 * 28 9 8 47 47 H 1.07995 * 119.96641 * 180.25311 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 -0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1481 2.5883 0.0002 7 6 4.3784 3.2379 1.1990 8 6 4.8382 4.5401 1.2034 9 6 5.0688 5.1977 0.0014 10 7 5.5334 6.5154 0.0021 11 6 6.3912 6.9270 0.9567 12 8 6.6939 6.1795 1.8638 13 6 6.9693 8.3028 0.8983 14 8 6.5863 9.0867 0.0547 15 7 7.9163 8.6740 1.7825 16 6 8.3227 7.7557 2.8492 17 6 8.5393 9.9957 1.6771 18 1 8.1126 10.5319 0.8294 19 6 10.0468 9.8340 1.4712 20 6 8.2857 10.7731 2.9429 21 1 7.7170 10.3274 3.7455 22 6 8.7790 12.0538 3.0759 23 7 9.4711 12.5967 2.0983 24 14 8.4652 13.0172 4.6453 25 1 7.6675 12.1879 5.5840 26 1 9.7620 13.3713 5.2764 27 1 7.7163 14.2583 4.3229 28 6 4.8308 4.5439 -1.2011 29 6 4.3765 3.2399 -1.1981 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.9501 -0.8400 -0.0004 34 1 4.0089 0.6538 -0.8908 35 1 4.0095 0.6534 0.8892 36 1 4.1985 2.7263 2.1330 37 1 5.0182 5.0467 2.1400 38 1 5.2387 7.1339 -0.6845 39 1 7.6317 7.8442 3.6877 40 1 8.3083 6.7328 2.4731 41 1 9.3301 8.0069 3.1808 42 1 10.4737 9.2976 2.3186 43 1 10.2302 9.2717 0.5557 44 1 10.5103 10.8173 1.3923 45 1 9.8184 13.4975 2.1920 46 1 5.0047 5.0536 -2.1373 47 1 4.1951 2.7296 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615248416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:37 Heat of formation + Delta-G solvation = -60.112617 kcal Electronic energy + Delta-G solvation = -29591.318332 eV Core-core repulsion = 25354.031779 eV Total energy + Delta-G solvation = -4237.286553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.88946 -40.13807 -39.03058 -37.82518 -35.92129 -35.02063 -34.77211 -32.78583 -32.04231 -31.02380 -29.54062 -28.42053 -26.48032 -26.04480 -25.27749 -24.24353 -23.08944 -21.90019 -20.85625 -20.46340 -19.27369 -17.79971 -17.58432 -17.15401 -16.63797 -16.41540 -15.98265 -15.95424 -15.62494 -15.25681 -15.12548 -14.73137 -14.37964 -14.14886 -13.90867 -13.69530 -13.63359 -13.29062 -13.14537 -12.73581 -12.64490 -12.61810 -12.40513 -12.24778 -12.03726 -11.67097 -11.55091 -11.19991 -11.10572 -10.83976 -10.79633 -10.68281 -10.40648 -10.24876 -10.21048 -10.08611 -9.54901 -9.23118 -9.01100 -8.74246 -8.47479 -8.13958 -7.73047 -6.11801 -4.19762 1.04749 1.37370 1.92405 2.31670 2.71438 2.85249 3.25385 3.33420 3.37636 3.59731 3.80446 4.03991 4.36893 4.38188 4.58145 4.61600 4.78691 4.86409 4.91121 4.97806 5.08720 5.10252 5.20110 5.31477 5.37700 5.51211 5.58026 5.92448 5.95571 6.02133 6.13635 6.22226 6.28632 6.39724 6.46917 6.57946 6.70543 6.73703 6.93915 6.95545 7.05722 7.13543 7.29638 7.38018 7.65241 7.86403 7.87463 8.00519 8.08957 8.34469 8.60031 8.85890 9.46469 10.93719 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.001857 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.110515 B =15076.645212 C =15376.850816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.741 5.741 3 C 0.510 3.490 4 O -0.524 6.524 5 C -0.097 4.097 6 C -0.090 4.090 7 C -0.086 4.086 8 C -0.118 4.118 9 C 0.151 3.849 10 N -0.652 5.652 11 C 0.509 3.491 12 O -0.500 6.500 13 C 0.493 3.507 14 O -0.536 6.536 15 N -0.550 5.550 16 C 0.072 3.928 17 C 0.253 3.747 18 H 0.067 0.933 19 C -0.148 4.148 20 C -0.526 4.526 21 H 0.062 0.938 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.901 3.099 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.283 1.283 28 C -0.141 4.141 29 C -0.086 4.086 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.422 0.578 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.013 0.987 44 H 0.097 0.903 45 H 0.264 0.736 46 H 0.128 0.872 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 -27.448 -5.633 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.394 5.394 3 C 0.296 3.704 4 O -0.399 6.399 5 C -0.137 4.137 6 C -0.091 4.091 7 C -0.104 4.104 8 C -0.138 4.138 9 C 0.056 3.944 10 N -0.299 5.299 11 C 0.293 3.707 12 O -0.374 6.374 13 C 0.273 3.727 14 O -0.415 6.415 15 N -0.281 5.281 16 C -0.071 4.071 17 C 0.154 3.846 18 H 0.085 0.915 19 C -0.206 4.206 20 C -0.564 4.564 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.729 3.271 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.162 4.162 29 C -0.105 4.105 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.235 0.765 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.159 0.841 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.032 0.968 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.146 0.854 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.423 -26.516 -5.430 29.378 hybrid contribution -0.103 0.415 0.571 0.713 sum -11.526 -26.101 -4.859 28.943 Atomic orbital electron populations 1.21525 0.79669 1.02099 1.02426 1.45845 1.07792 1.08761 1.77023 1.20751 0.90146 0.83604 0.75922 1.90765 1.70269 1.31162 1.47684 1.20608 0.91701 0.96156 1.05197 1.19168 1.01621 0.94683 0.93670 1.20821 0.98014 0.94358 0.97246 1.21287 0.99213 0.95295 0.98002 1.17807 0.97702 0.84569 0.94287 1.43284 1.44427 1.10839 1.31323 1.20959 0.78864 0.89130 0.81737 1.90634 1.57791 1.56187 1.32808 1.19587 0.82512 0.86640 0.83935 1.90725 1.60451 1.52858 1.37456 1.48262 1.35200 1.18307 1.26312 1.22152 1.00731 0.93777 0.90447 1.19191 0.89779 0.76403 0.99251 0.91533 1.22113 0.98461 1.03061 0.96963 1.21314 1.34745 0.99180 1.01196 0.91975 1.24892 0.94760 0.97231 0.96862 1.69879 1.35648 1.15364 1.31655 0.86388 0.77991 0.79849 0.82886 1.19735 1.20859 1.20868 1.20878 1.03653 0.95074 0.96569 1.20667 0.98603 0.93965 0.97257 0.92235 0.92254 0.90740 0.76525 0.87969 0.87926 0.85976 0.84064 0.73957 0.92957 0.89406 0.91145 0.94718 0.96782 0.88439 0.92632 0.85430 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.70 59.85 0.64 1.08 16 2 N -0.74 -3.89 5.71 -67.08 -0.38 -4.28 16 3 C 0.51 4.41 7.82 -10.99 -0.09 4.32 16 4 O -0.52 -7.15 16.03 5.55 0.09 -7.06 16 5 C -0.10 -0.62 5.83 -29.04 -0.17 -0.79 16 6 C -0.09 -0.92 4.38 -104.58 -0.46 -1.37 16 7 C -0.09 -0.99 9.69 -39.62 -0.38 -1.38 16 8 C -0.12 -1.64 8.70 -39.38 -0.34 -1.98 16 9 C 0.15 2.08 6.30 -83.75 -0.53 1.55 16 10 N -0.65 -9.70 5.32 -10.30 -0.05 -9.75 16 11 C 0.51 9.00 7.61 -11.63 -0.09 8.91 16 12 O -0.50 -8.96 10.57 5.47 0.06 -8.90 16 13 C 0.49 10.41 7.73 -11.63 -0.09 10.32 16 14 O -0.54 -12.49 15.82 5.49 0.09 -12.40 16 15 N -0.55 -12.20 2.75 -175.81 -0.48 -12.69 16 16 C 0.07 1.37 8.75 59.85 0.52 1.89 16 17 C 0.25 6.46 2.62 -69.08 -0.18 6.28 16 18 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 19 C -0.15 -3.50 8.96 37.16 0.33 -3.17 16 20 C -0.53 -14.27 8.37 -34.44 -0.29 -14.56 16 21 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 23 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 24 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C -0.14 -1.63 9.97 -39.38 -0.39 -2.03 16 29 C -0.09 -0.89 9.69 -39.61 -0.38 -1.27 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.15 8.14 -51.92 -0.42 -0.27 16 33 H 0.40 0.73 8.83 -40.82 -0.36 0.37 16 34 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.10 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.14 2.13 6.22 -52.49 -0.33 1.81 16 38 H 0.42 5.73 8.30 -40.82 -0.34 5.39 16 39 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 40 H 0.09 1.56 5.36 -51.93 -0.28 1.28 16 41 H 0.07 1.31 6.44 -51.93 -0.33 0.98 16 42 H 0.03 0.76 6.67 -51.93 -0.35 0.42 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 45 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -34.45 392.62 -7.57 -42.01 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.42 Total: 5.78 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.99 Total: 9.48 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.29 Total: -50.92 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: 0.23 Total: -28.37 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.45 -7.57 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615248416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.098 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds