Wall clock time and date at job start Wed Apr 1 2020 04:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47085 * 2 1 4 4 C 1.53005 * 109.47099 * 240.00249 * 2 1 3 5 5 N 1.46496 * 109.47147 * 65.00091 * 4 2 1 6 6 S 1.65601 * 120.00236 * 165.00311 * 5 4 2 7 7 O 1.42101 * 104.27738 * 181.07086 * 6 5 4 8 8 O 1.42109 * 104.27285 * 308.92553 * 6 5 4 9 9 C 1.81401 * 104.45058 * 64.99335 * 6 5 4 10 10 C 1.52997 * 109.47068 * 173.92140 * 9 6 5 11 11 C 1.50703 * 115.54804 * 57.41916 * 10 9 6 12 12 H 1.07995 * 120.00132 * 271.54503 * 11 10 9 13 13 C 1.37884 * 119.99539 * 91.54155 * 11 10 9 14 14 N 1.31513 * 120.00312 * 4.01170 * 13 11 10 15 15 Si 1.86797 * 119.99519 * 184.00864 * 13 11 10 16 16 H 1.48498 * 109.47315 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47046 * 120.00196 * 15 13 11 18 18 H 1.48502 * 109.47102 * 240.00181 * 15 13 11 19 19 C 1.52993 * 117.50017 * 271.74818 * 10 9 6 20 20 C 1.52999 * 117.49775 * 203.08939 * 10 9 6 21 21 C 1.52999 * 109.47270 * 120.00247 * 2 1 3 22 22 C 1.53002 * 109.46839 * 291.85737 * 21 2 1 23 23 C 1.53004 * 109.62446 * 186.29116 * 22 21 2 24 24 O 1.43366 * 109.51096 * 306.60435 * 22 21 2 25 25 C 1.44197 * 107.28423 * 120.47861 * 24 22 21 26 26 C 1.54914 * 103.07830 * 21.43546 * 25 24 22 27 27 O 1.43751 * 109.63098 * 65.90163 * 22 21 2 28 28 H 1.09007 * 109.47263 * 310.57183 * 1 2 3 29 29 H 1.09002 * 109.47293 * 70.57568 * 1 2 3 30 30 H 1.09007 * 109.47375 * 190.57845 * 1 2 3 31 31 H 1.09000 * 109.47008 * 185.00025 * 4 2 1 32 32 H 1.08999 * 109.46783 * 304.99708 * 4 2 1 33 33 H 0.97004 * 119.99879 * 344.99656 * 5 4 2 34 34 H 1.08993 * 109.47337 * 293.92794 * 9 6 5 35 35 H 1.08997 * 109.46756 * 53.92498 * 9 6 5 36 36 H 0.96996 * 119.99632 * 185.00612 * 14 13 11 37 37 H 1.09004 * 117.50410 * 0.02562 * 19 10 9 38 38 H 1.09004 * 117.49786 * 145.01864 * 19 10 9 39 39 H 1.09008 * 117.49737 * 214.98535 * 20 10 9 40 40 H 1.09003 * 117.50121 * 359.97438 * 20 10 9 41 41 H 1.09005 * 109.47209 * 171.86010 * 21 2 1 42 42 H 1.08996 * 109.47366 * 51.85745 * 21 2 1 43 43 H 1.09001 * 109.47337 * 300.30643 * 23 22 21 44 44 H 1.09003 * 109.46758 * 180.31600 * 23 22 21 45 45 H 1.08990 * 109.47305 * 60.31329 * 23 22 21 46 46 H 1.09005 * 110.69146 * 263.03853 * 25 24 22 47 47 H 1.09004 * 110.84614 * 139.90749 * 25 24 22 48 48 H 1.09005 * 110.97599 * 206.33622 * 26 25 24 49 49 H 1.08998 * 110.97674 * 82.54737 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 16 2.3697 -0.2906 -3.8989 7 8 1.7748 0.6355 -4.7976 8 8 3.7627 -0.2496 -3.6204 9 6 1.8486 -1.9832 -4.2914 10 6 2.3272 -2.3511 -5.6973 11 6 3.8133 -2.2480 -5.9257 12 1 4.2460 -1.3138 -6.2515 13 6 4.6203 -3.3466 -5.7185 14 7 4.0854 -4.5046 -5.3983 15 14 6.4736 -3.1901 -5.8927 16 1 6.8203 -1.7927 -6.2565 17 1 7.1233 -3.5414 -4.6044 18 1 6.9505 -4.1116 -6.9551 19 6 1.4067 -2.0063 -6.8697 20 6 1.5751 -3.4631 -6.4311 21 6 2.0399 -0.7213 1.2492 22 6 1.7036 0.1082 2.4901 23 6 2.3466 -0.5286 3.7237 24 8 2.2000 1.4427 2.3229 25 6 1.0699 2.3342 2.4087 26 6 0.0168 1.4927 3.1721 27 8 0.2775 0.1627 2.6625 28 1 -0.3634 0.6684 0.7806 29 1 -0.3634 0.3418 -0.9692 30 1 -0.3634 -1.0102 0.1887 31 1 3.1262 -0.7994 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 0.9755 0.7274 -2.3792 34 1 2.2816 -2.6737 -3.5678 35 1 0.7614 -2.0475 -4.2494 36 1 4.6556 -5.2588 -5.1816 37 1 0.4603 -1.5170 -6.6396 38 1 1.8760 -1.7053 -7.8064 39 1 2.1551 -4.1201 -7.0794 40 1 0.7395 -3.9330 -5.9122 41 1 3.1202 -0.8490 1.1794 42 1 1.5627 -1.6983 1.3250 43 1 1.9683 -1.5434 3.8477 44 1 2.1008 0.0611 4.6069 45 1 3.4286 -0.5573 3.5956 46 1 0.7078 2.5940 1.4139 47 1 1.3261 3.2324 2.9706 48 1 -0.9945 1.8144 2.9235 49 1 0.1861 1.5385 4.2479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830652397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:55 Heat of formation + Delta-G solvation = -146.719808 kcal Electronic energy + Delta-G solvation = -30193.158647 eV Core-core repulsion = 26055.267725 eV Total energy + Delta-G solvation = -4137.890923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06905 -37.05859 -36.69917 -36.14827 -35.28209 -35.01083 -33.52031 -31.98372 -31.56726 -28.81588 -28.18994 -26.93890 -25.68054 -25.40448 -23.55298 -21.51689 -21.10948 -20.37821 -19.62337 -18.59745 -17.88284 -16.95052 -16.72074 -16.44640 -16.11456 -15.70904 -15.15838 -14.96240 -14.71193 -14.53561 -14.24123 -13.99113 -13.75140 -13.57566 -13.38346 -13.14575 -13.03610 -12.91572 -12.51294 -12.35614 -12.29053 -12.05290 -11.76069 -11.70973 -11.56935 -11.22439 -11.12027 -11.02048 -10.96660 -10.91755 -10.88130 -10.81365 -10.48883 -10.37855 -10.32172 -10.04004 -9.75311 -9.61071 -9.13723 -9.05111 -8.44878 -8.03799 -6.10979 -4.23306 1.12793 3.08903 3.32164 3.39908 3.49704 3.52610 3.65028 4.21966 4.37102 4.41826 4.47938 4.60353 4.63150 4.78416 4.86444 4.97713 5.00501 5.04669 5.12868 5.20758 5.25823 5.28524 5.31772 5.45000 5.49968 5.55084 5.56722 5.61009 5.72149 5.73493 5.86456 5.92533 5.95878 5.99093 6.14509 6.27744 6.31240 6.38840 6.41420 6.64910 6.78099 6.83544 7.04515 7.26224 7.34047 7.55777 7.81829 8.22590 8.83337 9.49091 10.95713 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002887 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.590814 B = 9696.156336 C =10346.419854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.083 0.917 4 C 0.120 3.880 5 N -1.133 6.133 6 S 2.612 3.388 7 O -0.975 6.975 8 O -0.949 6.949 9 C -0.557 4.557 10 C 0.035 3.965 11 C -0.516 4.516 12 H 0.068 0.932 13 C 0.082 3.918 14 N -0.874 5.874 15 Si 0.891 3.109 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.284 1.284 19 C -0.209 4.209 20 C -0.128 4.128 21 C -0.119 4.119 22 C 0.256 3.744 23 C -0.171 4.171 24 O -0.373 6.373 25 C 0.019 3.981 26 C 0.014 3.986 27 O -0.363 6.363 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.408 0.592 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 8.432 19.162 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.890 5.890 6 S 2.709 3.291 7 O -0.966 6.966 8 O -0.939 6.939 9 C -0.690 4.690 10 C 0.033 3.967 11 C -0.553 4.553 12 H 0.086 0.914 13 C -0.122 4.122 14 N -0.509 5.509 15 Si 0.718 3.282 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.210 1.210 19 C -0.247 4.247 20 C -0.168 4.168 21 C -0.158 4.158 22 C 0.179 3.821 23 C -0.229 4.229 24 O -0.294 6.294 25 C -0.058 4.058 26 C -0.063 4.063 27 O -0.283 6.283 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.241 0.759 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.115 0.885 48 H 0.125 0.875 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.791 8.571 18.599 22.286 hybrid contribution 0.169 -0.314 0.431 0.559 sum -8.622 8.256 19.030 22.464 Atomic orbital electron populations 1.22014 0.94482 1.02714 1.01386 1.21253 0.96639 1.00662 0.92887 0.89835 1.21286 1.00610 0.94399 0.84333 1.55994 1.58018 1.50158 1.24833 1.04971 0.74529 0.77643 0.71993 1.93499 1.78872 1.60928 1.63263 1.93533 1.30574 1.86843 1.82940 1.30001 1.07925 1.21866 1.09201 1.18291 0.93029 1.01432 0.83947 1.20591 0.88886 0.97743 1.48120 0.91402 1.24941 0.99002 0.94629 0.93667 1.70032 1.35235 1.00887 1.44788 0.86526 0.85114 0.78681 0.77867 1.19079 1.20516 1.21007 1.23198 1.00434 1.00202 1.00817 1.22480 1.00454 0.90195 1.03624 1.22004 1.02671 0.98939 0.92147 1.23385 0.79156 0.84504 0.95006 1.22368 1.02100 1.01562 0.96827 1.88925 1.30729 1.15788 1.93999 1.24197 0.86126 0.94262 1.01173 1.24332 1.00925 0.82213 0.98818 1.89324 1.22339 1.31891 1.84790 0.91597 0.93019 0.92472 0.90158 0.91946 0.75923 0.85640 0.88147 0.92852 0.91143 0.89650 0.88849 0.91854 0.89381 0.89607 0.90499 0.92034 0.90529 0.90399 0.88521 0.87485 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.28 37.15 0.31 -1.18 16 2 C -0.09 -1.05 2.37 -90.62 -0.21 -1.26 16 3 H 0.08 0.99 7.19 -51.93 -0.37 0.61 16 4 C 0.12 1.62 5.52 -4.04 -0.02 1.60 16 5 N -1.13 -17.10 5.70 -10.61 -0.06 -17.16 16 6 S 2.61 53.53 5.04 -107.50 -0.54 52.99 16 7 O -0.98 -21.98 18.08 -57.54 -1.04 -23.02 16 8 O -0.95 -22.92 16.90 -57.54 -0.97 -23.90 16 9 C -0.56 -11.63 5.97 37.16 0.22 -11.41 16 10 C 0.04 0.87 1.63 -155.66 -0.25 0.62 16 11 C -0.52 -14.35 7.76 -34.44 -0.27 -14.61 16 12 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 13 C 0.08 2.28 5.41 -17.82 -0.10 2.18 16 14 N -0.87 -24.21 12.11 55.43 0.67 -23.54 16 15 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.21 -4.70 9.94 -26.70 -0.27 -4.97 16 20 C -0.13 -3.01 8.93 -26.70 -0.24 -3.24 16 21 C -0.12 -1.20 4.30 -26.73 -0.11 -1.31 16 22 C 0.26 2.42 1.05 -26.73 -0.03 2.39 16 23 C -0.17 -1.37 9.20 37.16 0.34 -1.03 16 24 O -0.37 -3.83 9.79 -59.04 -0.58 -4.41 16 25 C 0.02 0.14 7.62 38.17 0.29 0.43 16 26 C 0.01 0.09 7.39 38.17 0.28 0.37 16 27 O -0.36 -3.31 8.29 -59.04 -0.49 -3.80 16 28 H 0.07 0.61 4.93 -51.93 -0.26 0.35 16 29 H 0.05 0.51 6.70 -51.93 -0.35 0.16 16 30 H 0.06 0.57 8.04 -51.93 -0.42 0.16 16 31 H 0.08 1.17 7.69 -51.93 -0.40 0.77 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.41 5.27 7.35 -34.47 -0.25 5.01 16 34 H 0.13 2.62 8.14 -51.93 -0.42 2.20 16 35 H 0.10 1.77 8.11 -51.93 -0.42 1.34 16 36 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 39 H 0.09 2.35 7.80 -51.92 -0.40 1.94 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 0.88 8.12 -51.93 -0.42 0.45 16 42 H 0.09 0.79 8.05 -51.93 -0.42 0.38 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -34.15 399.67 -10.38 -44.54 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -8.32 Total: 6.88 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: -0.06 Total: -31.43 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.61 Total: -40.70 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -3.08 Total: -55.12 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.54 Total: 52.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.15 -10.38 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830652397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.182 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds