Wall clock time and date at job start Wed Apr 1 2020 04:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47085 * 2 1 4 4 C 1.53005 * 109.47099 * 240.00249 * 2 1 3 5 5 N 1.46496 * 109.47147 * 65.00091 * 4 2 1 6 6 S 1.65601 * 120.00236 * 165.00311 * 5 4 2 7 7 O 1.42101 * 104.27738 * 181.07086 * 6 5 4 8 8 O 1.42109 * 104.27285 * 308.92553 * 6 5 4 9 9 C 1.81401 * 104.45058 * 64.99335 * 6 5 4 10 10 C 1.52997 * 109.47068 * 173.92140 * 9 6 5 11 11 C 1.50703 * 115.54804 * 57.41916 * 10 9 6 12 12 H 1.07995 * 120.00132 * 271.54503 * 11 10 9 13 13 C 1.37884 * 119.99539 * 91.54155 * 11 10 9 14 14 N 1.31513 * 120.00312 * 4.01170 * 13 11 10 15 15 Si 1.86797 * 119.99519 * 184.00864 * 13 11 10 16 16 H 1.48498 * 109.47315 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47046 * 120.00196 * 15 13 11 18 18 H 1.48502 * 109.47102 * 240.00181 * 15 13 11 19 19 C 1.52993 * 117.50017 * 271.74818 * 10 9 6 20 20 C 1.52999 * 117.49775 * 203.08939 * 10 9 6 21 21 C 1.52999 * 109.47270 * 120.00247 * 2 1 3 22 22 C 1.53002 * 109.46839 * 291.85737 * 21 2 1 23 23 C 1.53004 * 109.62446 * 186.29116 * 22 21 2 24 24 O 1.43366 * 109.51096 * 306.60435 * 22 21 2 25 25 C 1.44197 * 107.28423 * 120.47861 * 24 22 21 26 26 C 1.54914 * 103.07830 * 21.43546 * 25 24 22 27 27 O 1.43751 * 109.63098 * 65.90163 * 22 21 2 28 28 H 1.09007 * 109.47263 * 310.57183 * 1 2 3 29 29 H 1.09002 * 109.47293 * 70.57568 * 1 2 3 30 30 H 1.09007 * 109.47375 * 190.57845 * 1 2 3 31 31 H 1.09000 * 109.47008 * 185.00025 * 4 2 1 32 32 H 1.08999 * 109.46783 * 304.99708 * 4 2 1 33 33 H 0.97004 * 119.99879 * 344.99656 * 5 4 2 34 34 H 1.08993 * 109.47337 * 293.92794 * 9 6 5 35 35 H 1.08997 * 109.46756 * 53.92498 * 9 6 5 36 36 H 0.96996 * 119.99632 * 185.00612 * 14 13 11 37 37 H 1.09004 * 117.50410 * 0.02562 * 19 10 9 38 38 H 1.09004 * 117.49786 * 145.01864 * 19 10 9 39 39 H 1.09008 * 117.49737 * 214.98535 * 20 10 9 40 40 H 1.09003 * 117.50121 * 359.97438 * 20 10 9 41 41 H 1.09005 * 109.47209 * 171.86010 * 21 2 1 42 42 H 1.08996 * 109.47366 * 51.85745 * 21 2 1 43 43 H 1.09001 * 109.47337 * 300.30643 * 23 22 21 44 44 H 1.09003 * 109.46758 * 180.31600 * 23 22 21 45 45 H 1.08990 * 109.47305 * 60.31329 * 23 22 21 46 46 H 1.09005 * 110.69146 * 263.03853 * 25 24 22 47 47 H 1.09004 * 110.84614 * 139.90749 * 25 24 22 48 48 H 1.09005 * 110.97599 * 206.33622 * 26 25 24 49 49 H 1.08998 * 110.97674 * 82.54737 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 16 2.3697 -0.2906 -3.8989 7 8 1.7748 0.6355 -4.7976 8 8 3.7627 -0.2496 -3.6204 9 6 1.8486 -1.9832 -4.2914 10 6 2.3272 -2.3511 -5.6973 11 6 3.8133 -2.2480 -5.9257 12 1 4.2460 -1.3138 -6.2515 13 6 4.6203 -3.3466 -5.7185 14 7 4.0854 -4.5046 -5.3983 15 14 6.4736 -3.1901 -5.8927 16 1 6.8203 -1.7927 -6.2565 17 1 7.1233 -3.5414 -4.6044 18 1 6.9505 -4.1116 -6.9551 19 6 1.4067 -2.0063 -6.8697 20 6 1.5751 -3.4631 -6.4311 21 6 2.0399 -0.7213 1.2492 22 6 1.7036 0.1082 2.4901 23 6 2.3466 -0.5286 3.7237 24 8 2.2000 1.4427 2.3229 25 6 1.0699 2.3342 2.4087 26 6 0.0168 1.4927 3.1721 27 8 0.2775 0.1627 2.6625 28 1 -0.3634 0.6684 0.7806 29 1 -0.3634 0.3418 -0.9692 30 1 -0.3634 -1.0102 0.1887 31 1 3.1262 -0.7994 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 0.9755 0.7274 -2.3792 34 1 2.2816 -2.6737 -3.5678 35 1 0.7614 -2.0475 -4.2494 36 1 4.6556 -5.2588 -5.1816 37 1 0.4603 -1.5170 -6.6396 38 1 1.8760 -1.7053 -7.8064 39 1 2.1551 -4.1201 -7.0794 40 1 0.7395 -3.9330 -5.9122 41 1 3.1202 -0.8490 1.1794 42 1 1.5627 -1.6983 1.3250 43 1 1.9683 -1.5434 3.8477 44 1 2.1008 0.0611 4.6069 45 1 3.4286 -0.5573 3.5956 46 1 0.7078 2.5940 1.4139 47 1 1.3261 3.2324 2.9706 48 1 -0.9945 1.8144 2.9235 49 1 0.1861 1.5385 4.2479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830652397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:54 Heat of formation + Delta-G solvation = -170.400825 kcal Electronic energy + Delta-G solvation = -30194.185533 eV Core-core repulsion = 26055.267725 eV Total energy + Delta-G solvation = -4138.917809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.70797 -38.55365 -38.14846 -37.79059 -36.75858 -35.93030 -34.44158 -34.05804 -32.39234 -29.90123 -29.37591 -27.70656 -27.50071 -26.66518 -24.07878 -22.92683 -22.26764 -21.59923 -21.12654 -20.19979 -18.60488 -18.44162 -18.24967 -17.46678 -17.11932 -16.85042 -16.71988 -16.53510 -16.02076 -15.73188 -15.46467 -15.29083 -14.88913 -14.62743 -14.39874 -14.20583 -13.86376 -13.80652 -13.74830 -13.63212 -13.23182 -13.09571 -13.08300 -13.07535 -12.91271 -12.90165 -12.85064 -12.64238 -12.42965 -12.24672 -12.17428 -11.98019 -11.89271 -11.76340 -11.66576 -11.46871 -11.02826 -10.92075 -10.51133 -10.45237 -10.39009 -9.84451 -8.19947 -6.36018 -0.49569 1.35635 1.39557 1.51824 2.07369 2.39919 2.52444 2.95198 3.01731 3.07134 3.39208 3.47286 3.65579 3.73188 3.81797 3.96264 4.00590 4.07125 4.13814 4.29573 4.33229 4.37614 4.50108 4.54952 4.58456 4.61538 4.62061 4.66667 4.77388 4.78582 4.84558 4.85038 4.94297 5.00430 5.00893 5.04027 5.07366 5.20926 5.23913 5.26629 5.40132 5.46207 5.53978 5.67893 5.70143 6.18227 6.21751 6.21909 6.71241 7.37239 8.86275 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002887 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.590814 B = 9696.156336 C =10346.419854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.074 0.926 4 C 0.111 3.889 5 N -1.114 6.114 6 S 2.626 3.374 7 O -0.999 6.999 8 O -0.993 6.993 9 C -0.553 4.553 10 C 0.003 3.997 11 C -0.535 4.535 12 H 0.045 0.955 13 C 0.045 3.955 14 N -0.889 5.889 15 Si 0.932 3.068 16 H -0.277 1.277 17 H -0.273 1.273 18 H -0.271 1.271 19 C -0.198 4.198 20 C -0.125 4.125 21 C -0.123 4.123 22 C 0.254 3.746 23 C -0.169 4.169 24 O -0.396 6.396 25 C 0.011 3.989 26 C 0.013 3.987 27 O -0.375 6.375 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.420 0.580 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.127 0.873 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 8.574 20.682 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.015 4.015 5 N -0.875 5.875 6 S 2.723 3.277 7 O -0.989 6.989 8 O -0.983 6.983 9 C -0.686 4.686 10 C 0.001 3.999 11 C -0.573 4.573 12 H 0.063 0.937 13 C -0.158 4.158 14 N -0.525 5.525 15 Si 0.757 3.243 16 H -0.201 1.201 17 H -0.198 1.198 18 H -0.197 1.197 19 C -0.235 4.235 20 C -0.164 4.164 21 C -0.161 4.161 22 C 0.178 3.822 23 C -0.227 4.227 24 O -0.318 6.318 25 C -0.065 4.065 26 C -0.063 4.063 27 O -0.296 6.296 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.257 0.743 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.132 0.868 48 H 0.145 0.855 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.481 8.721 20.111 24.298 hybrid contribution 0.651 -0.303 -0.019 0.718 sum -9.830 8.418 20.093 23.900 Atomic orbital electron populations 1.22001 0.93290 1.03118 1.01870 1.21171 0.97514 0.99891 0.92044 0.90724 1.21531 1.00037 0.95426 0.84471 1.55459 1.57919 1.50577 1.23566 1.04244 0.73671 0.77261 0.72539 1.93456 1.78954 1.61638 1.64852 1.93478 1.33617 1.87345 1.83859 1.29880 1.10265 1.21658 1.06812 1.18431 0.91925 1.03172 0.86356 1.20747 0.91207 0.96929 1.48400 0.93656 1.25468 1.01931 0.94619 0.93773 1.70064 1.36140 1.01068 1.45259 0.85904 0.81811 0.78187 0.78375 1.20140 1.19808 1.19658 1.23253 1.00949 0.99636 0.99712 1.22399 1.00589 0.90182 1.03242 1.22038 1.02464 0.99464 0.92144 1.23379 0.79616 0.84266 0.94962 1.22352 1.01877 1.01936 0.96512 1.88907 1.32241 1.16513 1.94156 1.24401 0.85751 0.94635 1.01671 1.24530 1.01668 0.80770 0.99356 1.89295 1.21920 1.33275 1.85120 0.90663 0.92799 0.92277 0.91766 0.90274 0.74310 0.85855 0.84397 0.92530 0.88302 0.90373 0.91334 0.89525 0.89909 0.88805 0.89869 0.91363 0.90774 0.90524 0.86784 0.85498 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.28 71.98 0.60 -1.99 16 2 C -0.09 -1.80 2.37 -10.80 -0.03 -1.83 16 3 H 0.07 1.70 7.19 -2.39 -0.02 1.68 16 4 C 0.11 2.87 5.52 86.38 0.48 3.35 16 5 N -1.11 -32.20 5.70 -187.49 -1.07 -33.27 16 6 S 2.63 106.37 5.04 -56.49 -0.28 106.08 16 7 O -1.00 -44.34 18.08 -127.65 -2.31 -46.65 16 8 O -0.99 -48.84 16.90 -127.65 -2.16 -51.00 16 9 C -0.55 -22.29 5.97 71.98 0.43 -21.86 16 10 C 0.00 0.16 1.63 -52.93 -0.09 0.07 16 11 C -0.54 -30.17 7.76 25.60 0.20 -29.98 16 12 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 13 C 0.05 2.51 5.41 84.66 0.46 2.97 16 14 N -0.89 -49.21 12.11 21.45 0.26 -48.96 16 15 Si 0.93 45.05 29.54 68.60 2.03 47.07 16 16 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 17 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 C -0.20 -8.65 9.94 30.61 0.30 -8.34 16 20 C -0.13 -5.71 8.93 30.62 0.27 -5.44 16 21 C -0.12 -2.33 4.30 30.59 0.13 -2.20 16 22 C 0.25 4.46 1.05 30.60 0.03 4.49 16 23 C -0.17 -2.48 9.20 71.98 0.66 -1.82 16 24 O -0.40 -7.70 9.79 -126.22 -1.24 -8.94 16 25 C 0.01 0.14 7.62 72.64 0.55 0.70 16 26 C 0.01 0.13 7.39 72.64 0.54 0.67 16 27 O -0.38 -6.05 8.29 -126.22 -1.05 -7.09 16 28 H 0.07 1.21 4.93 -2.38 -0.01 1.19 16 29 H 0.05 0.92 6.70 -2.39 -0.02 0.90 16 30 H 0.06 1.04 8.04 -2.38 -0.02 1.02 16 31 H 0.06 1.88 7.69 -2.39 -0.02 1.86 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.42 10.12 7.35 -96.74 -0.71 9.40 16 34 H 0.12 5.02 8.14 -2.39 -0.02 5.00 16 35 H 0.14 4.41 8.11 -2.39 -0.02 4.39 16 36 H 0.27 13.90 8.32 -92.71 -0.77 13.13 16 37 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.07 3.45 7.80 -2.38 -0.02 3.43 16 40 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.08 1.63 8.12 -2.38 -0.02 1.61 16 42 H 0.09 1.60 8.05 -2.39 -0.02 1.58 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 0.96 7.85 -2.38 -0.02 0.94 16 47 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -73.17 399.67 -1.05 -74.22 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.22 Total: 29.74 kcal Atomic # 6 Polarization: -65.76 SS G_CDS: 4.54 Total: -61.22 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -0.81 Total: -82.22 kcal Atomic # 8 Polarization: -106.93 SS G_CDS: -6.75 Total: -113.67 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 106.37 SS G_CDS: -0.28 Total: 106.08 kcal Total: -73.17 -1.05 -74.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830652397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.181 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds