Wall clock time and date at job start Wed Apr 1 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 120.00036 * 2 1 4 4 N 1.46501 * 109.47119 * 124.99641 * 3 2 1 5 5 C 1.34783 * 119.99723 * 81.29033 * 4 3 2 6 6 O 1.21356 * 119.99851 * 182.93919 * 5 4 3 7 7 C 1.49364 * 119.99726 * 2.94238 * 5 4 3 8 8 O 1.21357 * 120.00511 * 1.47053 * 7 5 4 9 9 N 1.34785 * 119.99858 * 181.47396 * 7 5 4 10 10 C 1.39104 * 120.00159 * 185.52358 * 9 7 5 11 11 C 1.39714 * 119.57838 * 13.19491 * 10 9 7 12 12 C 1.38655 * 119.49467 * 180.02562 * 11 10 9 13 13 C 1.38354 * 118.66714 * 359.72866 * 12 11 10 14 14 C 1.40589 * 119.13719 * 0.51316 * 13 12 11 15 15 C 1.41338 * 119.78602 * 179.75375 * 14 13 12 16 16 H 1.07998 * 119.99908 * 5.70065 * 15 14 13 17 17 C 1.40030 * 119.99947 * 185.70921 * 15 14 13 18 18 N 1.30743 * 119.99875 * 205.27697 * 17 15 14 19 19 Si 1.86799 * 120.00256 * 25.27545 * 17 15 14 20 20 H 1.48500 * 109.46993 * 270.00061 * 19 17 15 21 21 H 1.48495 * 109.47058 * 29.99903 * 19 17 15 22 22 H 1.48503 * 109.47316 * 150.00217 * 19 17 15 23 23 N 1.31931 * 119.58061 * 193.17759 * 10 9 7 24 24 C 1.46493 * 120.00371 * 261.29066 * 4 3 2 25 25 H 1.09006 * 109.47474 * 172.91472 * 24 4 3 26 26 C 1.52999 * 109.47322 * 52.91079 * 24 4 3 27 27 C 1.53002 * 109.47163 * 292.91193 * 24 4 3 28 28 O 1.42903 * 109.47051 * 63.75288 * 27 24 4 29 29 C 1.42894 * 114.00022 * 179.97438 * 28 27 24 30 30 H 1.08001 * 120.00400 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00232 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00246 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.46898 * 5.00044 * 3 2 1 34 34 H 1.08995 * 109.47018 * 245.00008 * 3 2 1 35 35 H 0.96999 * 119.99244 * 5.52168 * 9 7 5 36 36 H 1.07999 * 120.25311 * 359.97438 * 11 10 9 37 37 H 1.07989 * 120.66411 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.42704 * 180.28890 * 13 12 11 39 39 H 0.97000 * 119.99628 * 354.96946 * 18 17 15 40 40 H 1.09006 * 109.47167 * 300.00580 * 26 24 4 41 41 H 1.09002 * 109.46866 * 60.00446 * 26 24 4 42 42 H 1.08998 * 109.47484 * 179.97438 * 26 24 4 43 43 H 1.09005 * 109.47133 * 183.75220 * 27 24 4 44 44 H 1.09001 * 109.47257 * 303.75099 * 27 24 4 45 45 H 1.08999 * 109.47619 * 300.00492 * 29 28 27 46 46 H 1.09003 * 109.47145 * 60.00565 * 29 28 27 47 47 H 1.09002 * 109.47647 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.1861 0.7105 1.0384 6 8 4.9342 0.6870 1.9937 7 6 4.5865 0.0507 -0.2403 8 8 3.8500 0.0971 -1.2038 9 7 5.7659 -0.5963 -0.3243 10 6 6.1914 -1.1114 -1.5444 11 6 5.5434 -0.7243 -2.7201 12 6 5.9685 -1.2392 -3.9352 13 6 7.0331 -2.1228 -3.9457 14 6 7.6404 -2.4773 -2.7283 15 6 8.7256 -3.3829 -2.7225 16 1 9.1453 -3.7286 -3.6556 17 6 9.2564 -3.8318 -1.5070 18 7 10.4976 -4.2381 -1.4460 19 14 8.1912 -3.8501 0.0275 20 1 8.3209 -2.5513 0.7356 21 1 6.7731 -4.0648 -0.3570 22 1 8.6329 -4.9488 0.9236 23 7 7.2019 -1.9590 -1.5767 24 6 2.6279 2.0342 2.3640 25 1 3.3800 1.8413 3.1291 26 6 1.2659 1.5351 2.8504 27 6 2.5523 3.5378 2.0910 28 8 1.5068 3.7996 1.1527 29 6 1.3504 5.1822 0.8275 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 6.3180 -0.7027 0.4661 36 1 4.7170 -0.0299 -2.6826 37 1 5.4816 -0.9526 -4.8555 38 1 7.3906 -2.5375 -4.8766 39 1 11.0287 -4.2977 -2.2555 40 1 0.5138 1.7281 2.0854 41 1 1.3198 0.4639 3.0450 42 1 0.9940 2.0573 3.7677 43 1 2.3458 4.0661 3.0219 44 1 3.5024 3.8810 1.6816 45 1 1.1188 5.7444 1.7322 46 1 2.2755 5.5599 0.3919 47 1 0.5380 5.2972 0.1099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890370942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:46 Heat of formation + Delta-G solvation = -39.686333 kcal Electronic energy + Delta-G solvation = -31229.743100 eV Core-core repulsion = 26993.342297 eV Total energy + Delta-G solvation = -4236.400803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15234 -39.55327 -38.38038 -37.84738 -36.64068 -34.64800 -33.74018 -33.54625 -31.64516 -31.05548 -29.68032 -27.70010 -26.56983 -26.09107 -25.55741 -24.81473 -22.27330 -21.78990 -20.60698 -20.25793 -19.43616 -18.42707 -17.91278 -17.40592 -16.68833 -16.36340 -16.15003 -16.07740 -15.56926 -15.46404 -15.15434 -14.75629 -14.31144 -14.15118 -13.96328 -13.68053 -13.39106 -13.31480 -13.06565 -12.92886 -12.58286 -12.54195 -12.31865 -12.25320 -12.03917 -11.90044 -11.62265 -11.46471 -11.26420 -11.21629 -10.97135 -10.66396 -10.34162 -10.08289 -10.04240 -9.83104 -9.43982 -9.02054 -8.99771 -8.76234 -8.53918 -8.03750 -7.47781 -7.33995 -4.77945 1.30285 2.03579 2.43129 2.56203 2.66807 3.29003 3.38370 3.47384 3.56718 3.58535 3.84300 4.30774 4.34511 4.52519 4.53821 4.67104 4.87687 4.93561 5.02185 5.03499 5.09116 5.15777 5.28217 5.33373 5.36506 5.50197 5.52698 5.69990 5.81635 5.83947 5.89647 6.00740 6.11701 6.18717 6.39151 6.47759 6.51714 6.63467 6.71361 6.76637 6.95761 7.07766 7.13087 7.39305 7.43391 7.58608 7.72551 7.74407 8.07195 8.16403 8.33222 8.61447 9.43696 9.90612 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002950 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.067405 B = 9489.645858 C =10042.875409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.148 4.148 3 C 0.111 3.889 4 N -0.570 5.570 5 C 0.510 3.490 6 O -0.521 6.521 7 C 0.507 3.493 8 O -0.484 6.484 9 N -0.621 5.621 10 C 0.379 3.621 11 C -0.321 4.321 12 C -0.036 4.036 13 C -0.276 4.276 14 C 0.275 3.725 15 C -0.484 4.484 16 H 0.086 0.914 17 C 0.057 3.943 18 N -0.792 5.792 19 Si 1.130 2.870 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.319 1.319 23 N -0.597 5.597 24 C 0.137 3.863 25 H 0.116 0.884 26 C -0.156 4.156 27 C 0.051 3.949 28 O -0.383 6.383 29 C 0.030 3.970 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.418 0.582 36 H 0.149 0.851 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 14.979 7.143 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.167 4.167 3 C -0.009 4.009 4 N -0.303 5.303 5 C 0.293 3.707 6 O -0.397 6.397 7 C 0.288 3.712 8 O -0.359 6.359 9 N -0.266 5.266 10 C 0.148 3.852 11 C -0.346 4.346 12 C -0.060 4.060 13 C -0.298 4.298 14 C 0.151 3.849 15 C -0.515 4.515 16 H 0.104 0.896 17 C -0.167 4.167 18 N -0.413 5.413 19 Si 0.961 3.039 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.250 1.250 23 N -0.321 5.321 24 C 0.034 3.966 25 H 0.133 0.867 26 C -0.214 4.214 27 C -0.026 4.026 28 O -0.302 6.302 29 C -0.067 4.067 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.256 0.744 36 H 0.166 0.834 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.016 14.320 9.182 24.778 hybrid contribution 0.248 0.646 -2.189 2.296 sum -17.768 14.966 6.993 24.261 Atomic orbital electron populations 1.23753 0.95675 1.01577 1.01904 1.23256 0.96006 0.98903 0.98501 1.21569 0.93122 0.96184 0.90053 1.47817 1.15578 1.50993 1.15884 1.20155 0.82359 0.79911 0.88295 1.90761 1.51532 1.59020 1.38338 1.19912 0.81935 0.80481 0.88824 1.90536 1.50437 1.57503 1.37390 1.42969 1.19888 1.51741 1.12000 1.18084 0.92037 0.91794 0.83317 1.21832 1.09393 1.12495 0.90880 1.20922 0.94418 0.94207 0.96434 1.21645 1.02325 1.07590 0.98289 1.18126 0.90412 0.90642 0.85675 1.20623 1.12382 1.22308 0.96198 0.89629 1.27589 0.95474 0.89114 1.04562 1.70623 1.06070 1.31173 1.33410 0.82382 0.74292 0.75405 0.71786 1.20629 1.21103 1.24992 1.66275 1.18241 1.17214 1.30385 1.21331 0.99104 0.89235 0.86919 0.86660 1.22069 0.96039 1.01612 1.01667 1.22987 0.90963 0.95854 0.92827 1.87850 1.54596 1.24870 1.62928 1.22756 1.01469 0.82471 0.99986 0.88576 0.88694 0.87704 0.87634 0.86137 0.74420 0.83435 0.87605 0.87713 0.90229 0.90792 0.92024 0.91514 0.91867 0.92636 0.94125 0.94014 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 13.73 29.02 0.40 -1.48 16 2 C -0.15 -1.74 8.26 -36.02 -0.30 -2.04 16 3 C 0.11 1.29 4.47 -5.19 -0.02 1.27 16 4 N -0.57 -6.92 2.38 -168.00 -0.40 -7.32 16 5 C 0.51 7.72 7.65 -11.62 -0.09 7.63 16 6 O -0.52 -8.69 15.83 5.49 0.09 -8.60 16 7 C 0.51 8.77 7.61 -11.62 -0.09 8.68 16 8 O -0.48 -8.48 8.78 5.49 0.05 -8.43 16 9 N -0.62 -12.30 5.39 -11.83 -0.06 -12.37 16 10 C 0.38 8.77 7.56 -155.10 -1.17 7.60 16 11 C -0.32 -7.07 8.93 -38.88 -0.35 -7.42 16 12 C -0.04 -0.77 10.15 -39.38 -0.40 -1.17 16 13 C -0.28 -6.55 9.83 -38.65 -0.38 -6.93 16 14 C 0.28 7.24 6.25 -85.00 -0.53 6.71 16 15 C -0.48 -13.10 9.43 -37.73 -0.36 -13.45 16 16 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 17 C 0.06 1.53 5.48 -17.34 -0.10 1.43 16 18 N -0.79 -21.29 13.65 55.55 0.76 -20.53 16 19 Si 1.13 27.67 25.90 -169.99 -4.40 23.27 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -7.10 7.01 56.52 0.40 -6.70 16 22 H -0.32 -7.57 7.11 56.52 0.40 -7.17 16 23 N -0.60 -15.33 5.75 -10.28 -0.06 -15.39 16 24 C 0.14 1.33 3.15 -67.93 -0.21 1.11 16 25 H 0.12 1.19 6.92 -51.93 -0.36 0.83 16 26 C -0.16 -1.29 8.49 37.16 0.32 -0.97 16 27 C 0.05 0.42 5.74 37.16 0.21 0.63 16 28 O -0.38 -3.19 7.01 -35.23 -0.25 -3.44 16 29 C 0.03 0.18 11.01 101.05 1.11 1.29 16 30 H 0.10 0.82 7.84 -52.49 -0.41 0.40 16 31 H 0.09 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.10 1.45 7.78 -52.49 -0.41 1.04 16 33 H 0.11 1.09 4.50 -51.93 -0.23 0.86 16 34 H 0.12 1.61 5.39 -51.93 -0.28 1.33 16 35 H 0.42 8.04 8.31 -40.82 -0.34 7.70 16 36 H 0.15 3.06 4.95 -54.04 -0.27 2.79 16 37 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.29 7.34 8.73 -40.82 -0.36 6.99 16 40 H 0.07 0.63 5.93 -51.93 -0.31 0.32 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -29.68 383.22 -6.87 -36.56 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.42 Total: 7.61 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.95 Total: 2.89 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.24 Total: -55.62 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.11 Total: -20.48 kcal Atomic # 14 Polarization: 27.67 SS G_CDS: -4.40 Total: 23.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.68 -6.87 -36.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890370942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.130 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds