Wall clock time and date at job start Wed Apr 1 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 120.00036 * 2 1 4 4 N 1.46501 * 109.47119 * 124.99641 * 3 2 1 5 5 C 1.34783 * 119.99723 * 81.29033 * 4 3 2 6 6 O 1.21356 * 119.99851 * 182.93919 * 5 4 3 7 7 C 1.49364 * 119.99726 * 2.94238 * 5 4 3 8 8 O 1.21357 * 120.00511 * 1.47053 * 7 5 4 9 9 N 1.34785 * 119.99858 * 181.47396 * 7 5 4 10 10 C 1.39104 * 120.00159 * 185.52358 * 9 7 5 11 11 C 1.39714 * 119.57838 * 13.19491 * 10 9 7 12 12 C 1.38655 * 119.49467 * 180.02562 * 11 10 9 13 13 C 1.38354 * 118.66714 * 359.72866 * 12 11 10 14 14 C 1.40589 * 119.13719 * 0.51316 * 13 12 11 15 15 C 1.41338 * 119.78602 * 179.75375 * 14 13 12 16 16 H 1.07998 * 119.99908 * 5.70065 * 15 14 13 17 17 C 1.40030 * 119.99947 * 185.70921 * 15 14 13 18 18 N 1.30743 * 119.99875 * 205.27697 * 17 15 14 19 19 Si 1.86799 * 120.00256 * 25.27545 * 17 15 14 20 20 H 1.48500 * 109.46993 * 270.00061 * 19 17 15 21 21 H 1.48495 * 109.47058 * 29.99903 * 19 17 15 22 22 H 1.48503 * 109.47316 * 150.00217 * 19 17 15 23 23 N 1.31931 * 119.58061 * 193.17759 * 10 9 7 24 24 C 1.46493 * 120.00371 * 261.29066 * 4 3 2 25 25 H 1.09006 * 109.47474 * 172.91472 * 24 4 3 26 26 C 1.52999 * 109.47322 * 52.91079 * 24 4 3 27 27 C 1.53002 * 109.47163 * 292.91193 * 24 4 3 28 28 O 1.42903 * 109.47051 * 63.75288 * 27 24 4 29 29 C 1.42894 * 114.00022 * 179.97438 * 28 27 24 30 30 H 1.08001 * 120.00400 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00232 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00246 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.46898 * 5.00044 * 3 2 1 34 34 H 1.08995 * 109.47018 * 245.00008 * 3 2 1 35 35 H 0.96999 * 119.99244 * 5.52168 * 9 7 5 36 36 H 1.07999 * 120.25311 * 359.97438 * 11 10 9 37 37 H 1.07989 * 120.66411 * 180.02562 * 12 11 10 38 38 H 1.08001 * 120.42704 * 180.28890 * 13 12 11 39 39 H 0.97000 * 119.99628 * 354.96946 * 18 17 15 40 40 H 1.09006 * 109.47167 * 300.00580 * 26 24 4 41 41 H 1.09002 * 109.46866 * 60.00446 * 26 24 4 42 42 H 1.08998 * 109.47484 * 179.97438 * 26 24 4 43 43 H 1.09005 * 109.47133 * 183.75220 * 27 24 4 44 44 H 1.09001 * 109.47257 * 303.75099 * 27 24 4 45 45 H 1.08999 * 109.47619 * 300.00492 * 29 28 27 46 46 H 1.09003 * 109.47145 * 60.00565 * 29 28 27 47 47 H 1.09002 * 109.47647 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.1861 0.7105 1.0384 6 8 4.9342 0.6870 1.9937 7 6 4.5865 0.0507 -0.2403 8 8 3.8500 0.0971 -1.2038 9 7 5.7659 -0.5963 -0.3243 10 6 6.1914 -1.1114 -1.5444 11 6 5.5434 -0.7243 -2.7201 12 6 5.9685 -1.2392 -3.9352 13 6 7.0331 -2.1228 -3.9457 14 6 7.6404 -2.4773 -2.7283 15 6 8.7256 -3.3829 -2.7225 16 1 9.1453 -3.7286 -3.6556 17 6 9.2564 -3.8318 -1.5070 18 7 10.4976 -4.2381 -1.4460 19 14 8.1912 -3.8501 0.0275 20 1 8.3209 -2.5513 0.7356 21 1 6.7731 -4.0648 -0.3570 22 1 8.6329 -4.9488 0.9236 23 7 7.2019 -1.9590 -1.5767 24 6 2.6279 2.0342 2.3640 25 1 3.3800 1.8413 3.1291 26 6 1.2659 1.5351 2.8504 27 6 2.5523 3.5378 2.0910 28 8 1.5068 3.7996 1.1527 29 6 1.3504 5.1822 0.8275 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 6.3180 -0.7027 0.4661 36 1 4.7170 -0.0299 -2.6826 37 1 5.4816 -0.9526 -4.8555 38 1 7.3906 -2.5375 -4.8766 39 1 11.0287 -4.2977 -2.2555 40 1 0.5138 1.7281 2.0854 41 1 1.3198 0.4639 3.0450 42 1 0.9940 2.0573 3.7677 43 1 2.3458 4.0661 3.0219 44 1 3.5024 3.8810 1.6816 45 1 1.1188 5.7444 1.7322 46 1 2.2755 5.5599 0.3919 47 1 0.5380 5.2972 0.1099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890370942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:45 Heat of formation + Delta-G solvation = -57.485738 kcal Electronic energy + Delta-G solvation = -31230.514940 eV Core-core repulsion = 26993.342297 eV Total energy + Delta-G solvation = -4237.172643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46786 -40.93767 -39.66785 -39.02510 -37.61496 -36.26982 -35.40637 -34.57414 -32.95262 -32.51592 -31.48982 -28.24408 -27.69952 -27.38121 -26.69541 -26.01841 -23.73119 -23.56778 -21.81489 -21.36939 -20.73296 -20.19604 -19.23674 -18.56635 -17.99369 -17.40657 -17.24248 -17.02429 -16.91598 -16.51210 -16.38708 -16.14152 -15.86749 -15.51749 -15.33425 -15.05855 -14.73083 -14.35794 -14.26082 -14.22169 -14.09983 -13.75037 -13.60507 -13.36533 -13.16133 -12.97546 -12.83666 -12.65046 -12.24952 -12.21176 -12.10986 -12.05207 -11.98582 -11.95397 -11.62144 -11.00948 -10.66939 -10.46663 -10.41777 -10.07469 -9.97347 -9.86587 -9.36150 -9.29427 -6.79562 -0.08429 0.72848 0.85530 0.95286 1.41023 1.49683 1.59748 1.87435 1.96919 2.32049 2.34959 2.56432 2.79937 3.03764 3.55857 3.78779 3.93919 4.05713 4.13660 4.22420 4.27810 4.32126 4.44306 4.49180 4.54534 4.60513 4.62159 4.62816 4.69898 4.70669 4.83968 4.93468 5.01116 5.04336 5.13557 5.26321 5.33256 5.34799 5.37047 5.39212 5.66726 5.73927 5.77032 5.87713 5.90530 5.92827 6.13618 6.19977 6.38652 6.48315 6.65458 6.75231 7.53290 7.87955 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002950 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.067405 B = 9489.645858 C =10042.875409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.174 4.174 3 C 0.118 3.882 4 N -0.556 5.556 5 C 0.513 3.487 6 O -0.541 6.541 7 C 0.509 3.491 8 O -0.484 6.484 9 N -0.628 5.628 10 C 0.367 3.633 11 C -0.314 4.314 12 C -0.027 4.027 13 C -0.291 4.291 14 C 0.259 3.741 15 C -0.516 4.516 16 H 0.075 0.925 17 C 0.033 3.967 18 N -0.812 5.812 19 Si 1.158 2.842 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.309 1.309 23 N -0.616 5.616 24 C 0.130 3.870 25 H 0.109 0.891 26 C -0.148 4.148 27 C 0.056 3.944 28 O -0.397 6.397 29 C 0.026 3.974 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.419 0.581 36 H 0.165 0.835 37 H 0.147 0.853 38 H 0.116 0.884 39 H 0.286 0.714 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.649 17.291 7.724 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.193 4.193 3 C -0.002 4.002 4 N -0.287 5.287 5 C 0.295 3.705 6 O -0.419 6.419 7 C 0.292 3.708 8 O -0.358 6.358 9 N -0.274 5.274 10 C 0.136 3.864 11 C -0.338 4.338 12 C -0.051 4.051 13 C -0.313 4.313 14 C 0.134 3.866 15 C -0.548 4.548 16 H 0.093 0.907 17 C -0.187 4.187 18 N -0.434 5.434 19 Si 0.987 3.013 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.239 1.239 23 N -0.341 5.341 24 C 0.028 3.972 25 H 0.127 0.873 26 C -0.206 4.206 27 C -0.021 4.021 28 O -0.316 6.316 29 C -0.070 4.070 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.121 0.879 35 H 0.257 0.743 36 H 0.182 0.818 37 H 0.165 0.835 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.376 16.669 9.770 28.814 hybrid contribution 0.975 0.116 -2.428 2.619 sum -20.401 16.786 7.342 27.420 Atomic orbital electron populations 1.23956 0.94857 1.02932 0.98437 1.23078 0.96727 0.97778 1.01759 1.21525 0.92871 0.96873 0.88934 1.47975 1.14296 1.49501 1.16976 1.19724 0.83364 0.80420 0.87036 1.90757 1.52432 1.60231 1.38466 1.20391 0.80920 0.79692 0.89823 1.90514 1.50182 1.57148 1.37939 1.43043 1.20907 1.52419 1.11055 1.18434 0.91587 0.91350 0.85022 1.22234 1.09021 1.11788 0.90731 1.21364 0.93231 0.92538 0.97941 1.21830 1.03128 1.08486 0.97896 1.18354 0.90592 0.90643 0.87001 1.20616 1.14003 1.24242 0.95925 0.90726 1.28179 0.95791 0.88858 1.05901 1.70634 1.06338 1.33032 1.33426 0.82007 0.72841 0.75744 0.70663 1.20271 1.22320 1.23923 1.66233 1.19328 1.18030 1.30555 1.21611 0.99802 0.90300 0.85495 0.87308 1.22021 0.94828 1.01097 1.02651 1.22917 0.90717 0.94494 0.94020 1.87787 1.54394 1.26387 1.63077 1.22895 1.01777 0.81368 1.00960 0.86522 0.87902 0.90274 0.85794 0.87944 0.74320 0.81799 0.83487 0.86575 0.90319 0.90680 0.93168 0.89215 0.89270 0.93632 0.92722 0.94300 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 13.73 67.79 0.93 -1.81 16 2 C -0.17 -3.82 8.26 25.66 0.21 -3.61 16 3 C 0.12 2.53 4.47 85.63 0.38 2.91 16 4 N -0.56 -12.74 2.38 -803.80 -1.91 -14.65 16 5 C 0.51 15.22 7.65 87.24 0.67 15.89 16 6 O -0.54 -17.90 15.83 -3.27 -0.05 -17.96 16 7 C 0.51 17.34 7.61 87.24 0.66 18.00 16 8 O -0.48 -16.43 8.78 -3.27 -0.03 -16.45 16 9 N -0.63 -24.84 5.39 -309.70 -1.67 -26.51 16 10 C 0.37 16.86 7.56 133.31 1.01 17.86 16 11 C -0.31 -13.27 8.93 22.73 0.20 -13.07 16 12 C -0.03 -1.09 10.15 22.40 0.23 -0.87 16 13 C -0.29 -13.65 9.83 22.87 0.22 -13.42 16 14 C 0.26 13.81 6.25 40.20 0.25 14.06 16 15 C -0.52 -28.84 9.43 23.47 0.22 -28.62 16 16 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 17 C 0.03 1.83 5.48 85.29 0.47 2.30 16 18 N -0.81 -44.90 13.65 21.84 0.30 -44.60 16 19 Si 1.16 57.23 25.90 68.60 1.78 59.01 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.30 -14.98 7.01 99.48 0.70 -14.28 16 22 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 23 N -0.62 -31.94 5.75 -186.43 -1.07 -33.01 16 24 C 0.13 2.25 3.15 44.99 0.14 2.39 16 25 H 0.11 2.08 6.92 -2.38 -0.02 2.06 16 26 C -0.15 -2.04 8.49 71.98 0.61 -1.43 16 27 C 0.06 0.76 5.74 71.98 0.41 1.17 16 28 O -0.40 -5.38 7.01 -148.98 -1.04 -6.42 16 29 C 0.03 0.23 11.01 113.37 1.25 1.48 16 30 H 0.12 1.49 7.84 -2.91 -0.02 1.47 16 31 H 0.10 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.08 2.16 7.78 -2.91 -0.02 2.14 16 33 H 0.12 2.21 4.50 -2.38 -0.01 2.20 16 34 H 0.10 2.59 5.39 -2.44 -0.01 2.58 16 35 H 0.42 16.29 8.31 -92.71 -0.77 15.52 16 36 H 0.17 6.41 4.95 -27.60 -0.14 6.28 16 37 H 0.15 4.78 8.06 -2.92 -0.02 4.75 16 38 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 39 H 0.29 15.21 8.73 -92.71 -0.81 14.40 16 40 H 0.07 1.03 5.93 -2.38 -0.01 1.01 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -64.72 383.22 4.23 -60.49 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.07 Total: 26.87 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 7.87 Total: 13.24 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -4.36 Total: -118.77 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.12 Total: -40.83 kcal Atomic # 14 Polarization: 57.23 SS G_CDS: 1.78 Total: 59.01 kcal Total: -64.72 4.23 -60.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890370942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.001 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds