Wall clock time and date at job start Wed Apr 1 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47117 * 2 1 4 4 C 1.34776 * 119.99666 * 100.18031 * 3 2 1 5 5 O 1.21597 * 119.99915 * 187.21820 * 4 3 2 6 6 C 1.47531 * 120.00176 * 7.22045 * 4 3 2 7 7 C 1.39712 * 120.19042 * 328.57053 * 6 4 3 8 8 C 1.37785 * 119.90680 * 179.97438 * 7 6 4 9 9 C 1.38545 * 120.30404 * 359.97438 * 8 7 6 10 10 C 1.38053 * 120.38997 * 0.02562 * 9 8 7 11 11 C 1.38713 * 120.08441 * 359.97438 * 10 9 8 12 12 O 1.35651 * 120.15271 * 180.02562 * 11 10 9 13 13 C 1.42902 * 116.99986 * 359.97438 * 12 11 10 14 14 C 1.50704 * 109.47113 * 180.02562 * 13 12 11 15 15 N 1.34769 * 119.99624 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99725 * 0.02562 * 14 13 12 17 17 C 1.46495 * 120.00116 * 280.18557 * 3 2 1 18 18 C 1.53951 * 113.74049 * 222.80292 * 17 3 2 19 19 N 1.47807 * 86.03811 * 222.08250 * 18 17 3 20 20 C 1.36935 * 134.46083 * 204.64341 * 19 18 17 21 21 H 1.08001 * 120.00579 * 184.83224 * 20 19 18 22 22 C 1.38818 * 119.99722 * 4.83114 * 20 19 18 23 23 N 1.31619 * 119.99639 * 5.05491 * 22 20 19 24 24 Si 1.86796 * 120.00088 * 185.05707 * 22 20 19 25 25 H 1.48493 * 109.47568 * 94.99808 * 24 22 20 26 26 H 1.48502 * 109.47100 * 214.99980 * 24 22 20 27 27 H 1.48499 * 109.47050 * 334.99390 * 24 22 20 28 28 C 1.47585 * 91.05195 * 24.54906 * 19 18 17 29 29 H 1.09001 * 109.46972 * 299.99176 * 1 2 3 30 30 H 1.08993 * 109.47577 * 59.99828 * 1 2 3 31 31 H 1.09007 * 109.46716 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46972 * 240.00824 * 2 1 3 33 33 H 1.09000 * 109.47287 * 120.00426 * 2 1 3 34 34 H 1.07999 * 120.04420 * 359.95332 * 7 6 4 35 35 H 1.08001 * 119.85024 * 180.02562 * 8 7 6 36 36 H 1.07997 * 119.80995 * 179.72578 * 9 8 7 37 37 H 1.07999 * 119.96205 * 180.02562 * 10 9 8 38 38 H 1.09006 * 109.46937 * 299.99622 * 13 12 11 39 39 H 1.08999 * 109.47135 * 59.99834 * 13 12 11 40 40 H 0.96994 * 120.00729 * 359.97438 * 15 14 13 41 41 H 0.97009 * 119.99600 * 180.02562 * 15 14 13 42 42 H 1.08998 * 112.94969 * 354.39547 * 17 3 2 43 43 H 1.09004 * 113.76805 * 336.34630 * 18 17 3 44 44 H 1.09003 * 113.76734 * 107.74199 * 18 17 3 45 45 H 0.97003 * 119.99682 * 180.02562 * 23 22 20 46 46 H 1.09003 * 113.76890 * 221.15094 * 28 19 18 47 47 H 1.09004 * 113.76860 * 89.75450 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4375 1.9477 1.1489 5 8 2.7183 3.1305 1.1764 6 6 2.5556 1.1329 2.3730 7 6 1.6935 0.0540 2.5848 8 6 1.8093 -0.7034 3.7299 9 6 2.7777 -0.4008 4.6733 10 6 3.6361 0.6624 4.4767 11 6 3.5338 1.4358 3.3297 12 8 4.3769 2.4805 3.1348 13 6 5.3480 2.7292 4.1533 14 6 6.1880 3.9191 3.7666 15 7 7.1752 4.3404 4.5817 16 8 5.9757 4.4975 2.7220 17 6 2.0510 2.1466 -1.2487 18 6 3.3380 2.9700 -1.4375 19 7 2.4539 4.0489 -1.9263 20 6 2.6235 5.1273 -2.7530 21 1 1.8160 5.8299 -2.8967 22 6 3.8335 5.3175 -3.4063 23 7 4.7826 4.4106 -3.3106 24 14 4.1147 6.8603 -4.4211 25 1 4.8075 7.8789 -3.5920 26 1 4.9524 6.5302 -5.6020 27 1 2.8076 7.3983 -4.8764 28 6 1.3149 3.4962 -1.1679 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.9371 -0.1856 1.8520 35 1 1.1427 -1.5375 3.8924 36 1 2.8586 -0.9971 5.5701 37 1 4.3888 0.8919 5.2164 38 1 4.8411 2.9338 5.0964 39 1 5.9876 1.8539 4.2670 40 1 7.3448 3.8781 5.4173 41 1 7.7157 5.1066 4.3329 42 1 1.7798 1.5504 -2.1199 43 1 3.8477 3.2088 -0.5040 44 1 4.0076 2.5702 -2.1990 45 1 5.6283 4.5437 -3.7668 46 1 0.3721 3.5159 -1.7146 47 1 1.2289 3.8899 -0.1550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950818120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:16 Heat of formation + Delta-G solvation = 28.015226 kcal Electronic energy + Delta-G solvation = -31688.540559 eV Core-core repulsion = 27455.075516 eV Total energy + Delta-G solvation = -4233.465043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.90499 -39.80052 -38.90043 -37.44662 -36.46853 -35.36472 -33.82904 -32.08915 -31.14029 -30.58080 -29.91111 -28.36115 -27.14108 -24.45355 -24.28331 -23.43087 -22.78128 -22.21412 -20.83361 -20.23630 -18.84567 -18.15099 -17.65257 -16.80094 -16.51151 -16.47383 -16.41273 -16.09533 -15.31535 -15.17470 -14.98696 -14.52178 -14.41950 -14.17935 -13.92797 -13.77055 -13.47469 -13.26313 -12.86419 -12.54487 -12.51285 -12.20101 -12.11114 -11.79657 -11.51850 -11.42536 -11.27521 -11.20551 -11.03577 -10.78785 -10.69023 -10.41632 -9.97031 -9.89011 -9.83683 -9.76001 -9.30669 -9.16262 -8.90300 -8.45617 -8.33679 -7.85520 -6.54116 -5.50914 -2.82408 0.87865 1.23018 2.52079 2.56765 3.14664 3.39971 3.54883 3.60321 3.61255 3.67135 3.83689 4.44676 4.60105 4.64316 4.69596 4.72599 4.79005 4.80704 4.97402 5.08036 5.14976 5.24516 5.34387 5.47071 5.51916 5.64346 5.73494 5.76583 5.85404 5.90934 5.99872 6.06805 6.10981 6.21877 6.29134 6.49885 6.56981 6.62231 6.82280 6.86410 7.04763 7.20207 7.27930 7.56384 7.81695 7.87365 8.01695 8.16087 8.24116 8.83994 9.28861 9.95847 10.88858 11.65017 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008995 B = 0.004199 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.012114 B = 6666.221845 C = 9416.956693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 N -0.599 5.599 4 C 0.548 3.452 5 O -0.483 6.483 6 C -0.153 4.153 7 C -0.078 4.078 8 C -0.169 4.169 9 C -0.062 4.062 10 C -0.223 4.223 11 C 0.178 3.822 12 O -0.257 6.257 13 C 0.037 3.963 14 C 0.509 3.491 15 N -0.856 5.856 16 O -0.488 6.488 17 C 0.094 3.906 18 C 0.149 3.851 19 N -0.603 5.603 20 C -0.213 4.213 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.112 3.888 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.163 0.837 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.399 0.601 41 H 0.408 0.592 42 H 0.102 0.898 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.250 0.750 46 H 0.033 0.967 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -15.999 22.045 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.052 4.052 3 N -0.333 5.333 4 C 0.335 3.665 5 O -0.356 6.356 6 C -0.157 4.157 7 C -0.096 4.096 8 C -0.188 4.188 9 C -0.081 4.081 10 C -0.242 4.242 11 C 0.130 3.870 12 O -0.168 6.168 13 C -0.042 4.042 14 C 0.291 3.709 15 N -0.424 5.424 16 O -0.358 6.358 17 C -0.009 4.009 18 C 0.023 3.977 19 N -0.329 5.329 20 C -0.341 4.341 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.565 5.565 24 Si 0.740 3.260 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.207 1.207 28 C -0.015 4.015 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.180 0.820 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.226 0.774 41 H 0.240 0.760 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.908 -14.708 20.865 25.599 hybrid contribution 0.677 0.736 0.201 1.020 sum -1.231 -13.972 21.066 25.308 Atomic orbital electron populations 1.22291 0.96171 1.01962 1.03140 1.22346 0.94231 0.84419 1.04167 1.47967 1.63842 1.13162 1.08350 1.17945 0.78646 0.87353 0.82541 1.90943 1.46291 1.14476 1.83919 1.19549 0.99278 0.99989 0.96887 1.22173 0.98113 0.92057 0.97276 1.21015 1.00788 1.02060 0.94911 1.21043 0.93416 0.95162 0.98433 1.21171 1.04733 0.99900 0.98402 1.19017 0.89063 0.86315 0.92564 1.86438 1.42478 1.45042 1.42793 1.22488 0.91690 0.97893 0.92155 1.20039 0.81042 0.85255 0.84585 1.43641 1.37194 1.36753 1.24826 1.90991 1.66805 1.55370 1.22674 1.24014 1.02148 0.91084 0.83682 1.22813 0.91646 0.85290 0.97940 1.45607 1.06558 1.29992 1.50726 1.18982 0.98468 0.99874 1.16761 0.90530 1.24747 0.96506 0.98586 1.00760 1.69841 1.05659 1.33930 1.47082 0.86127 0.77572 0.82930 0.79345 1.21801 1.21863 1.20682 1.22962 0.91858 0.90581 0.96078 0.92129 0.91364 0.91603 0.90774 0.88198 0.81986 0.85411 0.85581 0.85128 0.88997 0.89029 0.77364 0.76008 0.88022 0.92914 0.90959 0.93949 0.94878 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.17 37.16 0.34 -1.44 16 2 C 0.07 0.88 5.59 -4.04 -0.02 0.85 16 3 N -0.60 -10.66 2.75 -169.12 -0.46 -11.12 16 4 C 0.55 10.86 6.74 -12.47 -0.08 10.77 16 5 O -0.48 -12.14 11.54 -13.55 -0.16 -12.29 16 6 C -0.15 -2.36 5.58 -104.84 -0.58 -2.95 16 7 C -0.08 -0.88 7.46 -39.20 -0.29 -1.17 16 8 C -0.17 -1.47 10.02 -39.63 -0.40 -1.87 16 9 C -0.06 -0.52 10.03 -39.54 -0.40 -0.91 16 10 C -0.22 -2.22 9.03 -39.47 -0.36 -2.58 16 11 C 0.18 2.60 6.67 -38.69 -0.26 2.34 16 12 O -0.26 -4.40 8.21 -47.77 -0.39 -4.80 16 13 C 0.04 0.41 5.22 36.01 0.19 0.60 16 14 C 0.51 7.01 8.18 -10.99 -0.09 6.92 16 15 N -0.86 -6.77 8.87 31.22 0.28 -6.49 16 16 O -0.49 -10.50 17.34 -14.35 -0.25 -10.75 16 17 C 0.09 2.03 4.57 -70.14 -0.32 1.71 16 18 C 0.15 4.13 6.99 -2.84 -0.02 4.11 16 19 N -0.60 -17.78 3.70 -177.86 -0.66 -18.44 16 20 C -0.21 -6.69 10.69 -15.06 -0.16 -6.85 16 21 H 0.08 2.32 7.83 -52.49 -0.41 1.90 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -29.98 11.29 55.49 0.63 -29.36 16 24 Si 0.91 24.27 29.56 -169.99 -5.02 19.24 16 25 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 26 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.11 2.74 8.27 -2.96 -0.02 2.71 16 29 H 0.06 0.62 7.13 -51.93 -0.37 0.25 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.06 3.90 -52.40 -0.20 0.86 16 34 H 0.16 1.56 2.85 -52.49 -0.15 1.41 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 38 H 0.09 0.70 7.66 -51.93 -0.40 0.30 16 39 H 0.09 0.68 7.66 -51.93 -0.40 0.29 16 40 H 0.40 1.38 8.83 -40.82 -0.36 1.02 16 41 H 0.41 3.11 8.93 -40.82 -0.36 2.74 16 42 H 0.10 2.02 8.07 -51.93 -0.42 1.60 16 43 H 0.05 1.63 5.79 -51.93 -0.30 1.33 16 44 H 0.07 2.16 6.87 -51.93 -0.36 1.80 16 45 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.05 1.34 6.23 -51.93 -0.32 1.01 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -44.71 379.31 -8.96 -53.66 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.06 Total: 2.77 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -2.58 Total: 11.85 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.22 Total: -65.41 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.80 Total: -27.84 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.02 Total: 19.24 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -44.71 -8.96 -53.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950818120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.679 kcal (2) G-P(sol) polarization free energy of solvation -44.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds