Wall clock time and date at job start Wed Apr 1 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47117 * 2 1 4 4 C 1.34776 * 119.99666 * 100.18031 * 3 2 1 5 5 O 1.21597 * 119.99915 * 187.21820 * 4 3 2 6 6 C 1.47531 * 120.00176 * 7.22045 * 4 3 2 7 7 C 1.39712 * 120.19042 * 328.57053 * 6 4 3 8 8 C 1.37785 * 119.90680 * 179.97438 * 7 6 4 9 9 C 1.38545 * 120.30404 * 359.97438 * 8 7 6 10 10 C 1.38053 * 120.38997 * 0.02562 * 9 8 7 11 11 C 1.38713 * 120.08441 * 359.97438 * 10 9 8 12 12 O 1.35651 * 120.15271 * 180.02562 * 11 10 9 13 13 C 1.42902 * 116.99986 * 359.97438 * 12 11 10 14 14 C 1.50704 * 109.47113 * 180.02562 * 13 12 11 15 15 N 1.34769 * 119.99624 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99725 * 0.02562 * 14 13 12 17 17 C 1.46495 * 120.00116 * 280.18557 * 3 2 1 18 18 C 1.53951 * 113.74049 * 222.80292 * 17 3 2 19 19 N 1.47807 * 86.03811 * 222.08250 * 18 17 3 20 20 C 1.36935 * 134.46083 * 204.64341 * 19 18 17 21 21 H 1.08001 * 120.00579 * 184.83224 * 20 19 18 22 22 C 1.38818 * 119.99722 * 4.83114 * 20 19 18 23 23 N 1.31619 * 119.99639 * 5.05491 * 22 20 19 24 24 Si 1.86796 * 120.00088 * 185.05707 * 22 20 19 25 25 H 1.48493 * 109.47568 * 94.99808 * 24 22 20 26 26 H 1.48502 * 109.47100 * 214.99980 * 24 22 20 27 27 H 1.48499 * 109.47050 * 334.99390 * 24 22 20 28 28 C 1.47585 * 91.05195 * 24.54906 * 19 18 17 29 29 H 1.09001 * 109.46972 * 299.99176 * 1 2 3 30 30 H 1.08993 * 109.47577 * 59.99828 * 1 2 3 31 31 H 1.09007 * 109.46716 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46972 * 240.00824 * 2 1 3 33 33 H 1.09000 * 109.47287 * 120.00426 * 2 1 3 34 34 H 1.07999 * 120.04420 * 359.95332 * 7 6 4 35 35 H 1.08001 * 119.85024 * 180.02562 * 8 7 6 36 36 H 1.07997 * 119.80995 * 179.72578 * 9 8 7 37 37 H 1.07999 * 119.96205 * 180.02562 * 10 9 8 38 38 H 1.09006 * 109.46937 * 299.99622 * 13 12 11 39 39 H 1.08999 * 109.47135 * 59.99834 * 13 12 11 40 40 H 0.96994 * 120.00729 * 359.97438 * 15 14 13 41 41 H 0.97009 * 119.99600 * 180.02562 * 15 14 13 42 42 H 1.08998 * 112.94969 * 354.39547 * 17 3 2 43 43 H 1.09004 * 113.76805 * 336.34630 * 18 17 3 44 44 H 1.09003 * 113.76734 * 107.74199 * 18 17 3 45 45 H 0.97003 * 119.99682 * 180.02562 * 23 22 20 46 46 H 1.09003 * 113.76890 * 221.15094 * 28 19 18 47 47 H 1.09004 * 113.76860 * 89.75450 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4375 1.9477 1.1489 5 8 2.7183 3.1305 1.1764 6 6 2.5556 1.1329 2.3730 7 6 1.6935 0.0540 2.5848 8 6 1.8093 -0.7034 3.7299 9 6 2.7777 -0.4008 4.6733 10 6 3.6361 0.6624 4.4767 11 6 3.5338 1.4358 3.3297 12 8 4.3769 2.4805 3.1348 13 6 5.3480 2.7292 4.1533 14 6 6.1880 3.9191 3.7666 15 7 7.1752 4.3404 4.5817 16 8 5.9757 4.4975 2.7220 17 6 2.0510 2.1466 -1.2487 18 6 3.3380 2.9700 -1.4375 19 7 2.4539 4.0489 -1.9263 20 6 2.6235 5.1273 -2.7530 21 1 1.8160 5.8299 -2.8967 22 6 3.8335 5.3175 -3.4063 23 7 4.7826 4.4106 -3.3106 24 14 4.1147 6.8603 -4.4211 25 1 4.8075 7.8789 -3.5920 26 1 4.9524 6.5302 -5.6020 27 1 2.8076 7.3983 -4.8764 28 6 1.3149 3.4962 -1.1679 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.9371 -0.1856 1.8520 35 1 1.1427 -1.5375 3.8924 36 1 2.8586 -0.9971 5.5701 37 1 4.3888 0.8919 5.2164 38 1 4.8411 2.9338 5.0964 39 1 5.9876 1.8539 4.2670 40 1 7.3448 3.8781 5.4173 41 1 7.7157 5.1066 4.3329 42 1 1.7798 1.5504 -2.1199 43 1 3.8477 3.2088 -0.5040 44 1 4.0076 2.5702 -2.1990 45 1 5.6283 4.5437 -3.7668 46 1 0.3721 3.5159 -1.7146 47 1 1.2289 3.8899 -0.1550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950818120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:15 Heat of formation + Delta-G solvation = -8.340105 kcal Electronic energy + Delta-G solvation = -31690.117045 eV Core-core repulsion = 27455.075516 eV Total energy + Delta-G solvation = -4235.041529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.03993 -41.07104 -40.13053 -38.66346 -38.09774 -36.67515 -34.86129 -34.25685 -32.24528 -31.66841 -30.89329 -29.49688 -29.00329 -26.58985 -25.80669 -24.69043 -23.75716 -23.43768 -21.89600 -21.77493 -20.28391 -19.12767 -18.79583 -18.60864 -17.93253 -17.48739 -17.41745 -17.29009 -16.95052 -16.43310 -16.29286 -15.99146 -15.86939 -15.47731 -15.37862 -15.00651 -14.76157 -14.37524 -14.28458 -13.98933 -13.70799 -13.49081 -13.46874 -13.26973 -12.96763 -12.84741 -12.70965 -12.65370 -12.43065 -12.26085 -12.03578 -11.97030 -11.89196 -11.57528 -11.50957 -11.16234 -10.97269 -10.80540 -10.43347 -9.84132 -9.49419 -9.16938 -8.89316 -7.91089 -5.27109 0.00603 0.44095 1.36939 1.43692 1.46970 1.51586 1.72711 1.90747 2.08442 2.46869 2.79555 2.85059 3.25327 3.49487 3.59027 3.75076 3.83878 3.87965 3.97940 4.06940 4.08086 4.13322 4.24840 4.35144 4.39678 4.45859 4.54741 4.57255 4.66733 4.82038 4.88025 4.97287 4.98340 5.03366 5.21278 5.24816 5.31863 5.38585 5.43685 5.46618 5.53591 5.75340 5.84268 5.89122 5.92601 6.26954 6.46106 6.62688 6.87154 7.27784 7.41174 7.57174 8.56399 9.24942 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008995 B = 0.004199 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.012114 B = 6666.221845 C = 9416.956693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.064 3.936 3 N -0.599 5.599 4 C 0.539 3.461 5 O -0.555 6.555 6 C -0.194 4.194 7 C -0.077 4.077 8 C -0.158 4.158 9 C -0.047 4.047 10 C -0.216 4.216 11 C 0.149 3.851 12 O -0.316 6.316 13 C 0.033 3.967 14 C 0.502 3.498 15 N -0.824 5.824 16 O -0.586 6.586 17 C 0.133 3.867 18 C 0.148 3.852 19 N -0.631 5.631 20 C -0.239 4.239 21 H 0.082 0.918 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.986 3.014 25 H -0.295 1.295 26 H -0.284 1.284 27 H -0.259 1.259 28 C 0.115 3.885 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.425 0.575 41 H 0.411 0.589 42 H 0.127 0.873 43 H 0.011 0.989 44 H 0.042 0.958 45 H 0.247 0.753 46 H 0.057 0.943 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -19.606 24.960 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.057 4.057 3 N -0.331 5.331 4 C 0.330 3.670 5 O -0.433 6.433 6 C -0.198 4.198 7 C -0.095 4.095 8 C -0.176 4.176 9 C -0.065 4.065 10 C -0.234 4.234 11 C 0.101 3.899 12 O -0.228 6.228 13 C -0.045 4.045 14 C 0.287 3.713 15 N -0.391 5.391 16 O -0.464 6.464 17 C 0.028 3.972 18 C 0.022 3.978 19 N -0.357 5.357 20 C -0.367 4.367 21 H 0.100 0.900 22 C -0.264 4.264 23 N -0.601 5.601 24 Si 0.813 3.187 25 H -0.223 1.223 26 H -0.210 1.210 27 H -0.183 1.183 28 C -0.011 4.011 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.140 0.860 34 H 0.192 0.808 35 H 0.187 0.813 36 H 0.189 0.811 37 H 0.183 0.817 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.257 0.743 41 H 0.243 0.757 42 H 0.145 0.855 43 H 0.029 0.971 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.377 -18.408 23.882 30.341 hybrid contribution 1.178 1.765 -0.462 2.172 sum -2.198 -16.643 23.420 28.815 Atomic orbital electron populations 1.22256 0.93903 1.04338 1.02398 1.22780 0.95988 0.81032 1.05887 1.47980 1.63685 1.15049 1.06428 1.18841 0.76907 0.87077 0.84224 1.90899 1.49267 1.17804 1.85354 1.19455 1.02546 1.02010 0.95800 1.22308 0.97330 0.90937 0.98913 1.21518 1.00837 1.01933 0.93285 1.21648 0.91484 0.93969 0.99383 1.21571 1.05642 0.99225 0.96992 1.19435 0.89251 0.86919 0.94249 1.86378 1.44111 1.46707 1.45606 1.22839 0.91527 0.97877 0.92212 1.20799 0.81528 0.85425 0.83586 1.43407 1.34901 1.36096 1.24713 1.90957 1.69869 1.58659 1.26952 1.23274 0.96699 0.90792 0.86454 1.22535 0.93503 0.86931 0.94827 1.46055 1.08603 1.30142 1.50918 1.19468 0.99117 1.00974 1.17146 0.90018 1.25773 0.96089 1.02150 1.02380 1.70079 1.05914 1.35974 1.48178 0.84960 0.78222 0.78175 0.77375 1.22275 1.21011 1.18326 1.22974 0.91796 0.91781 0.94546 0.92300 0.92760 0.87537 0.89685 0.85966 0.80750 0.81339 0.81069 0.81682 0.85080 0.84967 0.74254 0.75706 0.85501 0.97148 0.94001 0.94376 0.92444 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.17 71.98 0.66 -2.31 16 2 C 0.06 1.46 5.59 86.38 0.48 1.95 16 3 N -0.60 -22.15 2.75 -807.23 -2.22 -24.37 16 4 C 0.54 22.94 6.74 86.69 0.58 23.52 16 5 O -0.56 -30.99 11.54 13.98 0.16 -30.83 16 6 C -0.19 -6.09 5.58 -20.01 -0.11 -6.20 16 7 C -0.08 -1.53 7.46 22.52 0.17 -1.36 16 8 C -0.16 -1.90 10.02 22.24 0.22 -1.68 16 9 C -0.05 -0.51 10.03 22.30 0.22 -0.28 16 10 C -0.22 -3.50 9.03 22.34 0.20 -3.30 16 11 C 0.15 4.32 6.67 22.85 0.15 4.48 16 12 O -0.32 -11.55 8.21 -61.82 -0.51 -12.06 16 13 C 0.03 0.72 5.22 71.24 0.37 1.10 16 14 C 0.50 14.72 8.18 87.66 0.72 15.44 16 15 N -0.82 -12.81 8.87 -173.54 -1.54 -14.35 16 16 O -0.59 -28.19 17.34 16.02 0.28 -27.91 16 17 C 0.13 6.02 4.57 46.75 0.21 6.24 16 18 C 0.15 8.97 6.99 86.44 0.60 9.58 16 19 N -0.63 -39.66 3.70 -716.62 -2.65 -42.31 16 20 C -0.24 -15.75 10.69 84.04 0.90 -14.85 16 21 H 0.08 5.12 7.83 -2.91 -0.02 5.10 16 22 C -0.07 -4.67 5.50 84.86 0.47 -4.20 16 23 N -0.95 -65.93 11.29 21.65 0.24 -65.69 16 24 Si 0.99 51.86 29.56 68.60 2.03 53.89 16 25 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 26 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 28 C 0.12 5.94 8.27 86.49 0.72 6.65 16 29 H 0.06 1.06 7.13 -2.39 -0.02 1.04 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.12 2.31 3.90 -2.83 -0.01 2.30 16 34 H 0.18 2.81 2.85 -2.91 -0.01 2.80 16 35 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 37 H 0.17 1.37 6.30 -2.91 -0.02 1.35 16 38 H 0.13 1.70 7.66 -2.38 -0.02 1.68 16 39 H 0.13 1.67 7.66 -2.39 -0.02 1.65 16 40 H 0.42 2.02 8.83 -92.71 -0.82 1.20 16 41 H 0.41 6.42 8.93 -92.70 -0.83 5.59 16 42 H 0.13 5.10 8.07 -2.39 -0.02 5.08 16 43 H 0.01 0.74 5.79 -2.39 -0.01 0.73 16 44 H 0.04 2.73 6.87 -2.39 -0.02 2.71 16 45 H 0.25 16.41 8.31 -92.71 -0.77 15.64 16 46 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.03 1.74 6.23 -2.38 -0.01 1.73 16 Total: -1.00 -115.03 379.31 1.77 -113.26 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.60 Total: 15.59 kcal Atomic # 6 Polarization: 28.20 SS G_CDS: 6.57 Total: 34.77 kcal Atomic # 7 Polarization: -140.55 SS G_CDS: -6.16 Total: -146.71 kcal Atomic # 8 Polarization: -70.73 SS G_CDS: -0.07 Total: -70.80 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.03 Total: 53.89 kcal Total: -115.03 1.77 -113.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950818120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.922 kcal (2) G-P(sol) polarization free energy of solvation -115.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -113.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds