Wall clock time and date at job start Wed Apr 1 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47045 * 2 1 4 4 C 1.34774 * 119.99986 * 103.97175 * 3 2 1 5 5 O 1.21592 * 120.00280 * 186.79401 * 4 3 2 6 6 C 1.47527 * 120.00395 * 6.78711 * 4 3 2 7 7 C 1.39863 * 120.70916 * 326.86530 * 6 4 3 8 8 C 1.38614 * 118.63681 * 179.97438 * 7 6 4 9 9 C 1.38098 * 119.53518 * 359.85578 * 8 7 6 10 10 N 1.32434 * 120.63183 * 0.24735 * 9 8 7 11 11 C 1.31995 * 122.28791 * 359.82368 * 10 9 8 12 12 O 1.35425 * 119.83491 * 179.97438 * 11 10 9 13 13 C 1.50925 * 121.02209 * 180.31165 * 9 8 7 14 14 C 1.52921 * 109.78928 * 342.93042 * 13 9 8 15 15 O 1.43218 * 108.52696 * 49.46413 * 14 13 9 16 16 C 1.42742 * 113.05472 * 289.20521 * 15 14 13 17 17 C 1.46503 * 120.00225 * 283.96674 * 3 2 1 18 18 C 1.53946 * 113.74121 * 222.75149 * 17 3 2 19 19 N 1.47809 * 86.03144 * 222.08235 * 18 17 3 20 20 C 1.36947 * 134.45839 * 204.64409 * 19 18 17 21 21 H 1.07994 * 120.00430 * 179.86790 * 20 19 18 22 22 C 1.38810 * 119.99416 * 359.86655 * 20 19 18 23 23 N 1.31618 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99768 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47148 * 59.99771 * 24 22 20 26 26 H 1.48506 * 109.46817 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46675 * 299.99414 * 24 22 20 28 28 C 1.47582 * 91.05487 * 24.54650 * 19 18 17 29 29 H 1.08999 * 109.47141 * 299.99538 * 1 2 3 30 30 H 1.08992 * 109.46865 * 60.00488 * 1 2 3 31 31 H 1.09003 * 109.47086 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47408 * 239.99608 * 2 1 3 33 33 H 1.09005 * 109.47012 * 120.00144 * 2 1 3 34 34 H 1.07998 * 120.67997 * 0.02562 * 7 6 4 35 35 H 0.96697 * 113.99898 * 270.00829 * 12 11 10 36 36 H 1.08999 * 109.41476 * 222.83854 * 13 9 8 37 37 H 1.08997 * 109.42196 * 103.03051 * 13 9 8 38 38 H 1.09004 * 109.63304 * 289.75571 * 14 13 9 39 39 H 1.08997 * 109.79178 * 169.27317 * 14 13 9 40 40 H 1.09002 * 109.33801 * 171.82382 * 16 15 14 41 41 H 1.08998 * 109.33852 * 291.34664 * 16 15 14 42 42 H 1.09003 * 112.94052 * 354.33421 * 17 3 2 43 43 H 1.09003 * 113.76922 * 336.34333 * 18 17 3 44 44 H 1.08994 * 113.77480 * 107.74542 * 18 17 3 45 45 H 0.97004 * 120.00001 * 180.02562 * 23 22 20 46 46 H 1.08993 * 113.77118 * 221.15112 * 28 19 18 47 47 H 1.09003 * 113.76727 * 89.75289 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5086 1.9226 1.1327 5 8 2.7987 3.1029 1.1664 6 6 2.6933 1.0832 2.3317 7 6 1.8218 0.0235 2.6029 8 6 2.0356 -0.7378 3.7414 9 6 3.0966 -0.4365 4.5724 10 7 3.9063 0.5738 4.2938 11 6 3.7469 1.3308 3.2243 12 8 4.6044 2.3520 2.9878 13 6 3.3647 -1.2474 5.8168 14 6 2.1223 -2.0606 6.1824 15 8 1.6680 -2.7488 5.0114 16 6 1.0959 -1.8765 4.0370 17 6 1.9738 2.1739 -1.2312 18 6 3.2466 3.0031 -1.4808 19 7 2.3337 4.0911 -1.8903 20 6 2.4518 5.1878 -2.7020 21 1 1.6094 5.8487 -2.8428 22 6 3.6544 5.4498 -3.3439 23 7 4.6813 4.6446 -3.1719 24 14 3.8158 6.9460 -4.4506 25 1 3.5551 8.1762 -3.6609 26 1 5.1896 7.0005 -5.0120 27 1 2.8313 6.8507 -5.5583 28 6 1.2437 3.5202 -1.0755 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.9996 -0.1977 1.9385 35 1 4.3333 3.1924 3.3817 36 1 3.6139 -0.5771 6.6394 37 1 4.2001 -1.9237 5.6357 38 1 1.3394 -1.3922 6.5409 39 1 2.3700 -2.7840 6.9592 40 1 0.9055 -2.4347 3.1203 41 1 0.1548 -1.4788 4.4168 42 1 1.6495 1.5963 -2.0969 43 1 3.8129 3.2221 -0.5756 44 1 3.8680 2.6212 -2.2908 45 1 5.5218 4.8279 -3.6201 46 1 0.2691 3.5504 -1.5624 47 1 1.2204 3.8914 -0.0508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957118126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:01 Heat of formation + Delta-G solvation = 15.979229 kcal Electronic energy + Delta-G solvation = -31648.350883 eV Core-core repulsion = 27414.363920 eV Total energy + Delta-G solvation = -4233.986963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.51854 -39.96918 -38.76822 -37.00078 -36.77627 -35.73796 -33.64012 -32.06246 -31.99272 -30.76236 -30.28450 -27.37881 -25.88125 -25.32917 -24.65642 -23.82660 -23.35688 -22.93686 -21.55032 -20.33700 -18.90074 -18.41550 -17.68406 -17.13724 -16.74079 -16.49976 -16.29342 -15.78517 -15.50123 -15.31192 -14.91479 -14.64722 -14.60114 -14.22807 -14.06529 -13.88896 -13.64753 -13.10592 -12.94429 -12.79171 -12.53350 -12.35944 -12.25267 -12.02390 -11.75170 -11.70196 -11.46891 -11.35770 -11.24566 -11.15393 -10.79793 -10.63936 -10.42021 -10.13751 -9.96437 -9.85856 -9.78077 -9.42478 -9.22056 -8.90172 -8.59598 -8.13493 -6.72709 -5.66127 -2.97230 0.43210 0.76863 2.78813 3.08702 3.26391 3.42288 3.45521 3.49273 3.50925 3.56538 4.09191 4.12127 4.25949 4.46871 4.56402 4.62317 4.69658 4.81182 4.83122 4.92904 5.02445 5.09768 5.16130 5.22785 5.26446 5.28101 5.34592 5.50699 5.53312 5.55241 5.58474 5.67801 5.70969 5.74281 5.86900 6.07123 6.11423 6.36718 6.57924 6.60120 6.63022 6.97511 7.36257 7.42383 7.59798 7.65130 7.66941 7.75249 8.07488 8.47149 9.14457 9.80803 10.71740 11.50996 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.002759 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.563484 B =10144.763437 C =11063.993972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 N -0.593 5.593 4 C 0.560 3.440 5 O -0.497 6.497 6 C -0.193 4.193 7 C -0.045 4.045 8 C -0.198 4.198 9 C 0.180 3.820 10 N -0.508 5.508 11 C 0.376 3.624 12 O -0.464 6.464 13 C -0.106 4.106 14 C 0.059 3.941 15 O -0.372 6.372 16 C 0.110 3.890 17 C 0.090 3.910 18 C 0.157 3.843 19 N -0.603 5.603 20 C -0.218 4.218 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.113 3.887 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.168 0.832 35 H 0.411 0.589 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.253 0.747 46 H 0.035 0.965 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 -18.186 18.200 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.053 4.053 3 N -0.326 5.326 4 C 0.347 3.653 5 O -0.371 6.371 6 C -0.200 4.200 7 C -0.071 4.071 8 C -0.200 4.200 9 C 0.043 3.957 10 N -0.227 5.227 11 C 0.194 3.806 12 O -0.272 6.272 13 C -0.144 4.144 14 C -0.018 4.018 15 O -0.290 6.290 16 C 0.033 3.967 17 C -0.013 4.013 18 C 0.031 3.969 19 N -0.329 5.329 20 C -0.346 4.346 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.014 4.014 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.185 0.815 35 H 0.272 0.728 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.996 -17.658 18.145 26.551 hybrid contribution -0.581 1.424 -0.970 1.818 sum -8.577 -16.234 17.175 25.141 Atomic orbital electron populations 1.22266 0.95676 1.02227 1.03280 1.22342 0.94595 0.84121 1.04202 1.47980 1.61410 1.13115 1.10133 1.17698 0.78381 0.87075 0.82184 1.90866 1.48637 1.14887 1.82742 1.21276 0.98294 1.00374 1.00045 1.22293 0.98700 0.91288 0.94770 1.21042 1.00530 1.01473 0.96969 1.20790 0.89105 0.90775 0.95078 1.67082 1.28808 1.07120 1.19728 1.19010 0.85348 0.89110 0.87103 1.84689 1.46776 1.19560 1.76160 1.21154 1.00340 0.98316 0.94549 1.22697 0.94575 0.96442 0.88085 1.88110 1.79826 1.32811 1.28223 1.21344 0.93177 0.88853 0.93343 1.24121 1.02492 0.90628 0.84013 1.22704 0.91185 0.84700 0.98308 1.45662 1.09028 1.28097 1.50127 1.18928 0.97117 1.00551 1.18002 0.90391 1.24783 0.95732 0.99111 1.00905 1.69823 1.02229 1.38111 1.46476 0.86205 0.76750 0.82489 0.80333 1.21256 1.21605 1.21169 1.22930 0.92480 0.90194 0.95808 0.92289 0.91117 0.91337 0.90411 0.88695 0.81498 0.72827 0.88262 0.88367 0.92219 0.87482 0.87267 0.91194 0.87758 0.92844 0.91501 0.93686 0.94646 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 9.21 37.16 0.34 -1.14 16 2 C 0.07 0.76 5.62 -4.04 -0.02 0.74 16 3 N -0.59 -9.42 2.76 -169.15 -0.47 -9.88 16 4 C 0.56 9.81 6.73 -12.47 -0.08 9.73 16 5 O -0.50 -10.71 11.64 -12.76 -0.15 -10.85 16 6 C -0.19 -2.77 5.55 -104.73 -0.58 -3.35 16 7 C -0.05 -0.48 7.20 -38.83 -0.28 -0.76 16 8 C -0.20 -1.89 5.80 -104.60 -0.61 -2.50 16 9 C 0.18 1.97 6.68 -82.27 -0.55 1.42 16 10 N -0.51 -7.00 10.23 -9.14 -0.09 -7.10 16 11 C 0.38 5.70 7.74 -16.71 -0.13 5.57 16 12 O -0.46 -7.48 12.18 -36.01 -0.44 -7.92 16 13 C -0.11 -0.80 6.23 -27.81 -0.17 -0.97 16 14 C 0.06 0.34 6.84 37.12 0.25 0.60 16 15 O -0.37 -2.92 10.81 -35.23 -0.38 -3.30 16 16 C 0.11 0.74 6.65 35.94 0.24 0.98 16 17 C 0.09 1.77 4.48 -70.16 -0.31 1.45 16 18 C 0.16 4.00 6.79 -2.84 -0.02 3.98 16 19 N -0.60 -16.49 3.70 -177.93 -0.66 -17.14 16 20 C -0.22 -6.44 10.70 -15.06 -0.16 -6.60 16 21 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -28.62 11.39 55.49 0.63 -27.98 16 24 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.11 2.50 8.27 -2.97 -0.02 2.47 16 29 H 0.06 0.49 7.26 -51.93 -0.38 0.11 16 30 H 0.07 0.69 8.11 -51.93 -0.42 0.26 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.91 3.73 -52.51 -0.20 0.71 16 34 H 0.17 1.37 3.43 -52.49 -0.18 1.19 16 35 H 0.41 5.15 9.06 45.56 0.41 5.57 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.29 8.07 -51.93 -0.42 -0.13 16 39 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 1.87 8.07 -51.93 -0.42 1.45 16 43 H 0.05 1.50 5.77 -51.93 -0.30 1.20 16 44 H 0.07 1.86 7.17 -51.93 -0.37 1.49 16 45 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.05 1.17 6.25 -51.93 -0.32 0.84 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -37.91 371.78 -8.71 -46.62 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.52 Total: 2.70 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -2.21 Total: 11.26 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.59 Total: -62.11 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.97 Total: -22.08 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.91 -8.71 -46.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957118126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.598 kcal (2) G-P(sol) polarization free energy of solvation -37.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds