Wall clock time and date at job start Wed Apr 1 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47045 * 2 1 4 4 C 1.34774 * 119.99986 * 103.97175 * 3 2 1 5 5 O 1.21592 * 120.00280 * 186.79401 * 4 3 2 6 6 C 1.47527 * 120.00395 * 6.78711 * 4 3 2 7 7 C 1.39863 * 120.70916 * 326.86530 * 6 4 3 8 8 C 1.38614 * 118.63681 * 179.97438 * 7 6 4 9 9 C 1.38098 * 119.53518 * 359.85578 * 8 7 6 10 10 N 1.32434 * 120.63183 * 0.24735 * 9 8 7 11 11 C 1.31995 * 122.28791 * 359.82368 * 10 9 8 12 12 O 1.35425 * 119.83491 * 179.97438 * 11 10 9 13 13 C 1.50925 * 121.02209 * 180.31165 * 9 8 7 14 14 C 1.52921 * 109.78928 * 342.93042 * 13 9 8 15 15 O 1.43218 * 108.52696 * 49.46413 * 14 13 9 16 16 C 1.42742 * 113.05472 * 289.20521 * 15 14 13 17 17 C 1.46503 * 120.00225 * 283.96674 * 3 2 1 18 18 C 1.53946 * 113.74121 * 222.75149 * 17 3 2 19 19 N 1.47809 * 86.03144 * 222.08235 * 18 17 3 20 20 C 1.36947 * 134.45839 * 204.64409 * 19 18 17 21 21 H 1.07994 * 120.00430 * 179.86790 * 20 19 18 22 22 C 1.38810 * 119.99416 * 359.86655 * 20 19 18 23 23 N 1.31618 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99768 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47148 * 59.99771 * 24 22 20 26 26 H 1.48506 * 109.46817 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46675 * 299.99414 * 24 22 20 28 28 C 1.47582 * 91.05487 * 24.54650 * 19 18 17 29 29 H 1.08999 * 109.47141 * 299.99538 * 1 2 3 30 30 H 1.08992 * 109.46865 * 60.00488 * 1 2 3 31 31 H 1.09003 * 109.47086 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47408 * 239.99608 * 2 1 3 33 33 H 1.09005 * 109.47012 * 120.00144 * 2 1 3 34 34 H 1.07998 * 120.67997 * 0.02562 * 7 6 4 35 35 H 0.96697 * 113.99898 * 270.00829 * 12 11 10 36 36 H 1.08999 * 109.41476 * 222.83854 * 13 9 8 37 37 H 1.08997 * 109.42196 * 103.03051 * 13 9 8 38 38 H 1.09004 * 109.63304 * 289.75571 * 14 13 9 39 39 H 1.08997 * 109.79178 * 169.27317 * 14 13 9 40 40 H 1.09002 * 109.33801 * 171.82382 * 16 15 14 41 41 H 1.08998 * 109.33852 * 291.34664 * 16 15 14 42 42 H 1.09003 * 112.94052 * 354.33421 * 17 3 2 43 43 H 1.09003 * 113.76922 * 336.34333 * 18 17 3 44 44 H 1.08994 * 113.77480 * 107.74542 * 18 17 3 45 45 H 0.97004 * 120.00001 * 180.02562 * 23 22 20 46 46 H 1.08993 * 113.77118 * 221.15112 * 28 19 18 47 47 H 1.09003 * 113.76727 * 89.75289 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5086 1.9226 1.1327 5 8 2.7987 3.1029 1.1664 6 6 2.6933 1.0832 2.3317 7 6 1.8218 0.0235 2.6029 8 6 2.0356 -0.7378 3.7414 9 6 3.0966 -0.4365 4.5724 10 7 3.9063 0.5738 4.2938 11 6 3.7469 1.3308 3.2243 12 8 4.6044 2.3520 2.9878 13 6 3.3647 -1.2474 5.8168 14 6 2.1223 -2.0606 6.1824 15 8 1.6680 -2.7488 5.0114 16 6 1.0959 -1.8765 4.0370 17 6 1.9738 2.1739 -1.2312 18 6 3.2466 3.0031 -1.4808 19 7 2.3337 4.0911 -1.8903 20 6 2.4518 5.1878 -2.7020 21 1 1.6094 5.8487 -2.8428 22 6 3.6544 5.4498 -3.3439 23 7 4.6813 4.6446 -3.1719 24 14 3.8158 6.9460 -4.4506 25 1 3.5551 8.1762 -3.6609 26 1 5.1896 7.0005 -5.0120 27 1 2.8313 6.8507 -5.5583 28 6 1.2437 3.5202 -1.0755 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.9996 -0.1977 1.9385 35 1 4.3333 3.1924 3.3817 36 1 3.6139 -0.5771 6.6394 37 1 4.2001 -1.9237 5.6357 38 1 1.3394 -1.3922 6.5409 39 1 2.3700 -2.7840 6.9592 40 1 0.9055 -2.4347 3.1203 41 1 0.1548 -1.4788 4.4168 42 1 1.6495 1.5963 -2.0969 43 1 3.8129 3.2221 -0.5756 44 1 3.8680 2.6212 -2.2908 45 1 5.5218 4.8279 -3.6201 46 1 0.2691 3.5504 -1.5624 47 1 1.2204 3.8914 -0.0508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957118126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:00 Heat of formation + Delta-G solvation = -14.577812 kcal Electronic energy + Delta-G solvation = -31649.675936 eV Core-core repulsion = 27414.363920 eV Total energy + Delta-G solvation = -4235.312016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52597 -41.20468 -39.67378 -38.46471 -37.98170 -36.92135 -34.72444 -33.96454 -32.82653 -31.59021 -31.42717 -29.29478 -26.60790 -26.59317 -26.34892 -25.22654 -24.24505 -24.03308 -22.53468 -21.84628 -20.26591 -19.48193 -18.78711 -18.55067 -18.15021 -17.44708 -17.26325 -17.00550 -16.71219 -16.38574 -16.26764 -15.92695 -15.79859 -15.58251 -15.18526 -14.84543 -14.67770 -14.34529 -14.13859 -13.78633 -13.77244 -13.55878 -13.36403 -13.07713 -13.02146 -12.93039 -12.83115 -12.67395 -12.61992 -12.51050 -12.15986 -12.00579 -11.89467 -11.78689 -11.49582 -11.34460 -10.89429 -10.76227 -10.63854 -10.33353 -9.82647 -9.54524 -8.90349 -7.91355 -5.25381 -0.55322 -0.13066 1.41213 1.46827 1.52784 1.60139 1.85959 2.27957 2.46861 2.54434 2.92669 3.16383 3.27783 3.37668 3.48056 3.52360 3.58660 3.80029 3.93546 3.98792 4.11159 4.17709 4.23851 4.31306 4.33921 4.43589 4.53718 4.54611 4.58401 4.63630 4.75048 4.79778 4.83077 4.89490 4.94291 4.95630 5.02858 5.07280 5.22314 5.25046 5.29818 5.42767 5.47081 5.83299 5.89798 6.11669 6.36330 6.42724 6.69363 6.88630 7.14505 7.58548 8.55817 9.25701 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.002759 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.563484 B =10144.763437 C =11063.993972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.062 3.938 3 N -0.591 5.591 4 C 0.556 3.444 5 O -0.550 6.550 6 C -0.211 4.211 7 C -0.031 4.031 8 C -0.184 4.184 9 C 0.169 3.831 10 N -0.528 5.528 11 C 0.349 3.651 12 O -0.489 6.489 13 C -0.106 4.106 14 C 0.060 3.940 15 O -0.384 6.384 16 C 0.108 3.892 17 C 0.129 3.871 18 C 0.154 3.846 19 N -0.632 5.632 20 C -0.235 4.235 21 H 0.085 0.915 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.985 3.015 25 H -0.281 1.281 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.117 3.883 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.197 0.803 35 H 0.417 0.583 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.096 0.904 42 H 0.131 0.869 43 H 0.020 0.980 44 H 0.034 0.966 45 H 0.247 0.753 46 H 0.060 0.940 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.471 -21.080 19.010 31.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.058 4.058 3 N -0.323 5.323 4 C 0.344 3.656 5 O -0.429 6.429 6 C -0.218 4.218 7 C -0.055 4.055 8 C -0.186 4.186 9 C 0.032 3.968 10 N -0.247 5.247 11 C 0.169 3.831 12 O -0.299 6.299 13 C -0.144 4.144 14 C -0.016 4.016 15 O -0.303 6.303 16 C 0.031 3.969 17 C 0.025 3.975 18 C 0.027 3.973 19 N -0.358 5.358 20 C -0.364 4.364 21 H 0.103 0.897 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.812 3.188 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.193 1.193 28 C -0.009 4.009 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.213 0.787 35 H 0.278 0.722 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.114 0.886 42 H 0.148 0.852 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.140 -20.615 18.982 30.156 hybrid contribution 0.366 2.219 -1.055 2.484 sum -10.774 -18.395 17.928 27.855 Atomic orbital electron populations 1.22264 0.93082 1.04706 1.02946 1.22752 0.96610 0.80870 1.05613 1.47957 1.61191 1.14879 1.08279 1.18233 0.77281 0.86802 0.83309 1.90833 1.50730 1.17416 1.83890 1.21006 0.99816 1.01946 0.99016 1.22529 0.98098 0.89603 0.95306 1.21470 1.00047 1.01585 0.95546 1.21553 0.88885 0.90018 0.96344 1.67104 1.30046 1.08141 1.19445 1.19197 0.86177 0.89480 0.88293 1.84639 1.47977 1.20512 1.76793 1.21312 1.01639 0.98204 0.93198 1.22862 0.93798 0.96949 0.88015 1.88111 1.79934 1.33405 1.28818 1.21636 0.92832 0.87898 0.94557 1.23410 0.97332 0.90441 0.86342 1.22482 0.92915 0.86305 0.95577 1.46085 1.11059 1.28119 1.50550 1.19403 0.97500 1.01423 1.18042 0.89725 1.25738 0.95419 1.02361 1.02889 1.70057 1.02513 1.40037 1.47795 0.85067 0.76628 0.78560 0.78545 1.20695 1.21996 1.19349 1.22977 0.92493 0.91046 0.94432 0.91978 0.92194 0.87384 0.89246 0.87144 0.78676 0.72169 0.87506 0.88234 0.90961 0.85122 0.84755 0.88645 0.85159 0.96241 0.94742 0.94383 0.92212 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.21 71.98 0.66 -1.48 16 2 C 0.06 1.16 5.62 86.38 0.49 1.64 16 3 N -0.59 -18.48 2.76 -807.32 -2.23 -20.71 16 4 C 0.56 20.09 6.73 86.69 0.58 20.67 16 5 O -0.55 -25.47 11.64 13.25 0.15 -25.31 16 6 C -0.21 -6.10 5.55 -19.94 -0.11 -6.21 16 7 C -0.03 -0.57 7.20 22.75 0.16 -0.40 16 8 C -0.18 -2.96 5.80 -19.85 -0.12 -3.07 16 9 C 0.17 3.43 6.68 42.51 0.28 3.72 16 10 N -0.53 -14.74 10.23 -295.97 -3.03 -17.77 16 11 C 0.35 11.12 7.74 85.17 0.66 11.78 16 12 O -0.49 -17.47 12.18 -69.95 -0.85 -18.32 16 13 C -0.11 -1.36 6.23 29.89 0.19 -1.17 16 14 C 0.06 0.47 6.84 71.96 0.49 0.97 16 15 O -0.38 -4.37 10.81 -148.98 -1.61 -5.98 16 16 C 0.11 0.93 6.65 71.20 0.47 1.40 16 17 C 0.13 5.05 4.48 46.75 0.21 5.26 16 18 C 0.15 8.28 6.79 86.44 0.59 8.86 16 19 N -0.63 -35.72 3.70 -716.84 -2.66 -38.37 16 20 C -0.24 -14.24 10.70 84.03 0.90 -13.34 16 21 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 22 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 23 N -0.96 -62.18 11.39 21.65 0.25 -61.94 16 24 Si 0.98 48.46 29.55 68.60 2.03 50.49 16 25 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 28 C 0.12 5.21 8.27 86.48 0.72 5.93 16 29 H 0.06 0.76 7.26 -2.39 -0.02 0.75 16 30 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.51 8.14 -2.38 -0.02 1.50 16 33 H 0.11 1.73 3.73 -2.93 -0.01 1.72 16 34 H 0.20 2.37 3.43 -2.91 -0.01 2.36 16 35 H 0.42 12.19 9.06 -74.06 -0.67 11.52 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 0.41 8.07 -2.39 -0.02 0.39 16 39 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.13 4.46 8.07 -2.39 -0.02 4.44 16 43 H 0.02 1.20 5.77 -2.39 -0.01 1.18 16 44 H 0.03 2.04 7.17 -2.39 -0.02 2.02 16 45 H 0.25 15.61 8.31 -92.71 -0.77 14.83 16 46 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.04 1.76 6.25 -2.39 -0.01 1.74 16 Total: -1.00 -89.59 371.78 -0.95 -90.54 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.36 Total: 16.72 kcal Atomic # 6 Polarization: 24.01 SS G_CDS: 6.64 Total: 30.66 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -7.67 Total: -138.79 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -2.31 Total: -49.61 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -89.59 -0.95 -90.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957118126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.963 kcal (2) G-P(sol) polarization free energy of solvation -89.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds