Wall clock time and date at job start Wed Apr 1 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47497 * 2 1 4 4 O 1.42896 * 109.47359 * 239.99586 * 2 1 3 5 5 C 1.35908 * 117.00139 * 84.32211 * 4 2 1 6 6 C 1.39136 * 120.47247 * 354.52417 * 5 4 2 7 7 C 1.38536 * 118.37611 * 180.02562 * 6 5 4 8 8 C 1.38255 * 119.22278 * 0.02562 * 7 6 5 9 9 N 1.31854 * 120.88161 * 359.97438 * 8 7 6 10 10 C 1.31845 * 121.78300 * 359.70525 * 9 8 7 11 11 C 1.50701 * 109.47059 * 119.99582 * 2 1 3 12 12 O 1.21271 * 120.00243 * 115.00021 * 11 2 1 13 13 N 1.34776 * 119.99957 * 295.00328 * 11 2 1 14 14 C 1.47129 * 121.05385 * 359.97438 * 13 11 2 15 15 C 1.53220 * 108.73399 * 232.19364 * 14 13 11 16 16 O 1.43103 * 109.34647 * 305.87458 * 15 14 13 17 17 C 1.42490 * 113.98572 * 59.94544 * 16 15 14 18 18 C 1.53448 * 113.80776 * 170.52505 * 17 16 15 19 19 N 1.47676 * 85.98325 * 268.76124 * 18 17 16 20 20 C 1.36935 * 134.45992 * 155.70227 * 19 18 17 21 21 H 1.08001 * 119.99950 * 177.46359 * 20 19 18 22 22 C 1.38814 * 120.00199 * 357.45677 * 20 19 18 23 23 N 1.31615 * 119.99788 * 8.09086 * 22 20 19 24 24 Si 1.86796 * 119.99967 * 188.08893 * 22 20 19 25 25 H 1.48505 * 109.47358 * 94.97097 * 24 22 20 26 26 H 1.48499 * 109.47148 * 214.96733 * 24 22 20 27 27 H 1.48496 * 109.47538 * 334.97068 * 24 22 20 28 28 C 1.47673 * 91.07845 * 335.70006 * 19 18 17 29 29 C 1.47336 * 121.05611 * 179.97438 * 13 11 2 30 30 H 1.09004 * 109.46844 * 60.00548 * 1 2 3 31 31 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47365 * 300.00872 * 1 2 3 33 33 H 1.08005 * 120.81621 * 359.97438 * 6 5 4 34 34 H 1.08000 * 120.39056 * 180.02562 * 7 6 5 35 35 H 1.07991 * 119.56009 * 179.97438 * 8 7 6 36 36 H 1.07994 * 119.65604 * 180.29052 * 10 9 8 37 37 H 1.08999 * 109.59338 * 112.41436 * 14 13 11 38 38 H 1.09001 * 109.59216 * 351.96912 * 14 13 11 39 39 H 1.09004 * 109.49535 * 65.83650 * 15 14 13 40 40 H 1.09005 * 109.49450 * 185.88736 * 15 14 13 41 41 H 1.08995 * 113.79153 * 23.03009 * 18 17 16 42 42 H 1.09006 * 113.78561 * 154.50100 * 18 17 16 43 43 H 0.97001 * 119.99818 * 180.02562 * 23 22 20 44 44 H 1.08993 * 113.79316 * 270.03411 * 28 19 18 45 45 H 1.08997 * 113.89427 * 138.57171 * 28 19 18 46 46 H 1.08998 * 109.74175 * 12.00616 * 29 13 11 47 47 H 1.09001 * 109.78244 * 251.32336 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0991 0.0589 -2.3076 6 6 1.6348 1.3700 -2.3440 7 6 1.7504 2.0768 -3.5298 8 6 2.3183 1.4613 -4.6299 9 7 2.7486 0.2167 -4.5619 10 6 2.6627 -0.4880 -3.4509 11 6 2.0323 -0.7103 1.2305 12 8 2.6529 -1.7465 1.1217 13 7 1.7918 -0.1940 2.4520 14 6 1.0418 1.0618 2.6110 15 6 1.8585 2.0148 3.4898 16 8 2.1922 1.3592 4.7173 17 6 2.9633 0.1728 4.5493 18 6 3.5127 -0.4000 5.8625 19 7 4.7074 0.4283 5.6031 20 6 5.6866 0.9726 6.3906 21 1 6.4989 1.5229 5.9392 22 6 5.6351 0.8172 7.7690 23 7 4.7397 0.0171 8.3080 24 14 6.8366 1.7434 8.8589 25 1 6.2065 3.0021 9.3323 26 1 7.1965 0.9003 10.0271 27 1 8.0619 2.0645 8.0838 28 6 4.4229 0.4345 4.1540 29 6 2.2715 -0.8693 3.6705 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 1.1942 1.8254 -1.4693 34 1 1.4010 3.0967 -3.5943 35 1 2.4108 2.0070 -5.5571 36 1 3.0303 -1.5033 -3.4324 37 1 0.0828 0.8571 3.0868 38 1 0.8779 1.5158 1.6337 39 1 2.7730 2.2971 2.9681 40 1 1.2705 2.9077 3.7022 41 1 2.9497 -0.0956 6.7447 42 1 3.7053 -1.4724 5.8279 43 1 4.7035 -0.0912 9.2713 44 1 4.8860 -0.3896 3.6115 45 1 4.5826 1.4013 3.6768 46 1 2.9795 -1.6534 3.4024 47 1 1.4283 -1.3029 4.2082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053423178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:33 Heat of formation + Delta-G solvation = 8.685792 kcal Electronic energy + Delta-G solvation = -31136.523734 eV Core-core repulsion = 26902.220504 eV Total energy + Delta-G solvation = -4234.303230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.33520 -40.49288 -39.23179 -38.05479 -36.39838 -34.75051 -32.85006 -32.55785 -32.12302 -30.49374 -30.00536 -28.08075 -26.36257 -25.19768 -25.03244 -24.02877 -23.45348 -23.12887 -21.69335 -19.68183 -18.97195 -18.93427 -17.53955 -17.18815 -16.82733 -16.66644 -16.21687 -16.17288 -15.73419 -15.25252 -14.85172 -14.77913 -14.62041 -14.36973 -14.19546 -14.13275 -13.90369 -13.55417 -13.40609 -13.31240 -12.75978 -12.70874 -12.61624 -12.30853 -12.09284 -11.90755 -11.64916 -11.44543 -11.22589 -10.94628 -10.85012 -10.80197 -10.27476 -10.19904 -10.07686 -9.96240 -9.72642 -9.67266 -9.38494 -8.81288 -8.80288 -8.44117 -6.92453 -5.79075 -3.09084 0.75120 0.84486 2.15247 2.36220 3.07068 3.39764 3.42412 3.44348 3.46549 3.92213 3.95022 4.13292 4.18426 4.33458 4.37193 4.42278 4.43013 4.67123 4.69752 4.73264 4.81168 4.96434 5.01608 5.05689 5.07439 5.13771 5.29046 5.35191 5.47667 5.54814 5.60378 5.64191 5.64722 5.65815 5.71915 5.94091 5.99155 6.18680 6.26564 6.43244 6.49544 6.79036 6.90350 7.13356 7.15783 7.46879 7.59679 7.72750 7.93454 7.96107 9.02332 9.69222 10.54854 11.39196 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.002371 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.158164 B =11805.720255 C =12166.821116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 H 0.097 0.903 4 O -0.276 6.276 5 C 0.084 3.916 6 C -0.170 4.170 7 C -0.130 4.130 8 C 0.055 3.945 9 N -0.447 5.447 10 C 0.078 3.922 11 C 0.521 3.479 12 O -0.513 6.513 13 N -0.605 5.605 14 C 0.066 3.934 15 C 0.043 3.957 16 O -0.333 6.333 17 C 0.052 3.948 18 C 0.184 3.816 19 N -0.601 5.601 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.101 3.899 29 C 0.100 3.900 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.104 0.896 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.596 4.731 -21.372 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.007 3.993 3 H 0.115 0.885 4 O -0.187 6.187 5 C 0.036 3.964 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.102 4.102 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.307 3.693 12 O -0.387 6.387 13 N -0.341 5.341 14 C -0.058 4.058 15 C -0.035 4.035 16 O -0.250 6.250 17 C 0.010 3.990 18 C 0.058 3.942 19 N -0.327 5.327 20 C -0.350 4.350 21 H 0.098 0.902 22 C -0.202 4.202 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.025 4.025 29 C -0.022 4.022 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.122 0.878 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.715 3.704 -21.633 25.365 hybrid contribution 0.219 1.124 1.172 1.639 sum -12.496 4.827 -20.461 24.456 Atomic orbital electron populations 1.22520 0.92377 1.05036 1.04195 1.22227 0.95929 0.96971 0.84206 0.88521 1.86251 1.80640 1.36651 1.15131 1.20270 0.96573 0.91315 0.88250 1.21788 1.03611 0.94119 1.00161 1.22012 0.98876 1.01114 0.92947 1.22702 0.97247 0.91338 0.98913 1.67766 1.14781 1.07546 1.25453 1.22292 0.98634 1.01105 0.86069 1.19873 0.80319 0.85577 0.83575 1.90756 1.39284 1.22998 1.85643 1.48094 1.55666 1.24680 1.05664 1.22685 0.96333 0.85322 1.01413 1.22901 0.98540 0.94898 0.87132 1.88068 1.71416 1.38656 1.26891 1.23788 0.90033 0.85444 0.99736 1.22206 0.86147 0.93520 0.92336 1.45806 1.28643 1.58428 0.99870 1.18977 1.01631 1.26696 0.87664 0.90234 1.24763 0.99304 0.99730 0.96376 1.69809 1.37385 1.38998 1.10460 0.86098 0.80059 0.79283 0.80295 1.21522 1.21705 1.20658 1.23042 0.91773 0.98698 0.89000 1.22368 1.00123 0.96352 0.83347 0.90654 0.90262 0.89385 0.84168 0.84355 0.82452 0.81698 0.89788 0.89329 0.92748 0.87827 0.89838 0.93653 0.93551 0.94076 0.93805 0.87770 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.76 37.16 0.33 -0.93 16 2 C 0.07 0.65 1.82 -27.88 -0.05 0.60 16 3 H 0.10 0.75 5.68 -51.93 -0.30 0.45 16 4 O -0.28 -3.29 9.35 -39.31 -0.37 -3.65 16 5 C 0.08 0.86 6.61 -39.07 -0.26 0.60 16 6 C -0.17 -1.31 8.31 -39.14 -0.33 -1.64 16 7 C -0.13 -0.86 10.11 -39.46 -0.40 -1.26 16 8 C 0.05 0.43 11.18 -17.54 -0.20 0.24 16 9 N -0.45 -4.67 10.36 -13.13 -0.14 -4.81 16 10 C 0.08 0.82 11.14 -17.37 -0.19 0.63 16 11 C 0.52 7.09 7.13 -10.98 -0.08 7.01 16 12 O -0.51 -9.20 16.00 -14.30 -0.23 -9.43 16 13 N -0.61 -7.71 3.03 -172.46 -0.52 -8.23 16 14 C 0.07 0.61 5.10 -3.58 -0.02 0.59 16 15 C 0.04 0.52 6.88 37.27 0.26 0.78 16 16 O -0.33 -5.97 10.52 -35.23 -0.37 -6.34 16 17 C 0.05 0.97 1.21 -90.31 -0.11 0.86 16 18 C 0.18 4.28 6.88 -3.17 -0.02 4.26 16 19 N -0.60 -15.60 3.70 -180.24 -0.67 -16.27 16 20 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 21 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 23 N -0.92 -27.25 11.47 55.49 0.64 -26.61 16 24 Si 0.91 22.29 29.56 -169.99 -5.03 17.27 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.10 2.13 8.08 -3.17 -0.03 2.10 16 29 C 0.10 1.55 5.78 -3.66 -0.02 1.53 16 30 H 0.07 0.40 6.86 -51.93 -0.36 0.05 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.45 5.45 -51.93 -0.28 0.17 16 33 H 0.14 0.75 5.57 -52.48 -0.29 0.46 16 34 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.52 4.81 -51.93 -0.25 0.27 16 39 H 0.05 0.68 7.20 -51.93 -0.37 0.31 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 2.17 7.26 -51.93 -0.38 1.79 16 42 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 45 H 0.04 0.90 7.28 -51.93 -0.38 0.52 16 46 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -36.17 376.40 -8.68 -44.85 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.30 Total: -1.09 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.37 Total: 8.64 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.69 Total: -55.92 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.97 Total: -19.43 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.17 -8.68 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053423178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.540 kcal (2) G-P(sol) polarization free energy of solvation -36.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds