Wall clock time and date at job start Wed Apr 1 2020 05:20:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.47497 * 2 1
4 4 O 1.42896 * 109.47359 * 239.99586 * 2 1 3
5 5 C 1.35908 * 117.00139 * 84.32211 * 4 2 1
6 6 C 1.39136 * 120.47247 * 354.52417 * 5 4 2
7 7 C 1.38536 * 118.37611 * 180.02562 * 6 5 4
8 8 C 1.38255 * 119.22278 * 0.02562 * 7 6 5
9 9 N 1.31854 * 120.88161 * 359.97438 * 8 7 6
10 10 C 1.31845 * 121.78300 * 359.70525 * 9 8 7
11 11 C 1.50701 * 109.47059 * 119.99582 * 2 1 3
12 12 O 1.21271 * 120.00243 * 115.00021 * 11 2 1
13 13 N 1.34776 * 119.99957 * 295.00328 * 11 2 1
14 14 C 1.47129 * 121.05385 * 359.97438 * 13 11 2
15 15 C 1.53220 * 108.73399 * 232.19364 * 14 13 11
16 16 O 1.43103 * 109.34647 * 305.87458 * 15 14 13
17 17 C 1.42490 * 113.98572 * 59.94544 * 16 15 14
18 18 C 1.53448 * 113.80776 * 170.52505 * 17 16 15
19 19 N 1.47676 * 85.98325 * 268.76124 * 18 17 16
20 20 C 1.36935 * 134.45992 * 155.70227 * 19 18 17
21 21 H 1.08001 * 119.99950 * 177.46359 * 20 19 18
22 22 C 1.38814 * 120.00199 * 357.45677 * 20 19 18
23 23 N 1.31615 * 119.99788 * 8.09086 * 22 20 19
24 24 Si 1.86796 * 119.99967 * 188.08893 * 22 20 19
25 25 H 1.48505 * 109.47358 * 94.97097 * 24 22 20
26 26 H 1.48499 * 109.47148 * 214.96733 * 24 22 20
27 27 H 1.48496 * 109.47538 * 334.97068 * 24 22 20
28 28 C 1.47673 * 91.07845 * 335.70006 * 19 18 17
29 29 C 1.47336 * 121.05611 * 179.97438 * 13 11 2
30 30 H 1.09004 * 109.46844 * 60.00548 * 1 2 3
31 31 H 1.08996 * 109.47468 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.47365 * 300.00872 * 1 2 3
33 33 H 1.08005 * 120.81621 * 359.97438 * 6 5 4
34 34 H 1.08000 * 120.39056 * 180.02562 * 7 6 5
35 35 H 1.07991 * 119.56009 * 179.97438 * 8 7 6
36 36 H 1.07994 * 119.65604 * 180.29052 * 10 9 8
37 37 H 1.08999 * 109.59338 * 112.41436 * 14 13 11
38 38 H 1.09001 * 109.59216 * 351.96912 * 14 13 11
39 39 H 1.09004 * 109.49535 * 65.83650 * 15 14 13
40 40 H 1.09005 * 109.49450 * 185.88736 * 15 14 13
41 41 H 1.08995 * 113.79153 * 23.03009 * 18 17 16
42 42 H 1.09006 * 113.78561 * 154.50100 * 18 17 16
43 43 H 0.97001 * 119.99818 * 180.02562 * 23 22 20
44 44 H 1.08993 * 113.79316 * 270.03411 * 28 19 18
45 45 H 1.08997 * 113.89427 * 138.57171 * 28 19 18
46 46 H 1.08998 * 109.74175 * 12.00616 * 29 13 11
47 47 H 1.09001 * 109.78244 * 251.32336 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6737 -1.1667
5 6 2.0991 0.0589 -2.3076
6 6 1.6348 1.3700 -2.3440
7 6 1.7504 2.0768 -3.5298
8 6 2.3183 1.4613 -4.6299
9 7 2.7486 0.2167 -4.5619
10 6 2.6627 -0.4880 -3.4509
11 6 2.0323 -0.7103 1.2305
12 8 2.6529 -1.7465 1.1217
13 7 1.7918 -0.1940 2.4520
14 6 1.0418 1.0618 2.6110
15 6 1.8585 2.0148 3.4898
16 8 2.1922 1.3592 4.7173
17 6 2.9633 0.1728 4.5493
18 6 3.5127 -0.4000 5.8625
19 7 4.7074 0.4283 5.6031
20 6 5.6866 0.9726 6.3906
21 1 6.4989 1.5229 5.9392
22 6 5.6351 0.8172 7.7690
23 7 4.7397 0.0171 8.3080
24 14 6.8366 1.7434 8.8589
25 1 6.2065 3.0021 9.3323
26 1 7.1965 0.9003 10.0271
27 1 8.0619 2.0645 8.0838
28 6 4.4229 0.4345 4.1540
29 6 2.2715 -0.8693 3.6705
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3634 0.5139 0.8898
33 1 1.1942 1.8254 -1.4693
34 1 1.4010 3.0967 -3.5943
35 1 2.4108 2.0070 -5.5571
36 1 3.0303 -1.5033 -3.4324
37 1 0.0828 0.8571 3.0868
38 1 0.8779 1.5158 1.6337
39 1 2.7730 2.2971 2.9681
40 1 1.2705 2.9077 3.7022
41 1 2.9497 -0.0956 6.7447
42 1 3.7053 -1.4724 5.8279
43 1 4.7035 -0.0912 9.2713
44 1 4.8860 -0.3896 3.6115
45 1 4.5826 1.4013 3.6768
46 1 2.9795 -1.6534 3.4024
47 1 1.4283 -1.3029 4.2082
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001053423178.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:20:33
Heat of formation + Delta-G solvation = 8.685792 kcal
Electronic energy + Delta-G solvation = -31136.523734 eV
Core-core repulsion = 26902.220504 eV
Total energy + Delta-G solvation = -4234.303230 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.33520 -40.49288 -39.23179 -38.05479 -36.39838 -34.75051 -32.85006 -32.55785
-32.12302 -30.49374 -30.00536 -28.08075 -26.36257 -25.19768 -25.03244 -24.02877
-23.45348 -23.12887 -21.69335 -19.68183 -18.97195 -18.93427 -17.53955 -17.18815
-16.82733 -16.66644 -16.21687 -16.17288 -15.73419 -15.25252 -14.85172 -14.77913
-14.62041 -14.36973 -14.19546 -14.13275 -13.90369 -13.55417 -13.40609 -13.31240
-12.75978 -12.70874 -12.61624 -12.30853 -12.09284 -11.90755 -11.64916 -11.44543
-11.22589 -10.94628 -10.85012 -10.80197 -10.27476 -10.19904 -10.07686 -9.96240
-9.72642 -9.67266 -9.38494 -8.81288 -8.80288 -8.44117 -6.92453 -5.79075
-3.09084 0.75120 0.84486 2.15247 2.36220 3.07068 3.39764 3.42412
3.44348 3.46549 3.92213 3.95022 4.13292 4.18426 4.33458 4.37193
4.42278 4.43013 4.67123 4.69752 4.73264 4.81168 4.96434 5.01608
5.05689 5.07439 5.13771 5.29046 5.35191 5.47667 5.54814 5.60378
5.64191 5.64722 5.65815 5.71915 5.94091 5.99155 6.18680 6.26564
6.43244 6.49544 6.79036 6.90350 7.13356 7.15783 7.46879 7.59679
7.72750 7.93454 7.96107 9.02332 9.69222 10.54854 11.39196
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.019211 B = 0.002371 C = 0.002301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1457.158164 B =11805.720255 C =12166.821116
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.067 3.933
3 H 0.097 0.903
4 O -0.276 6.276
5 C 0.084 3.916
6 C -0.170 4.170
7 C -0.130 4.130
8 C 0.055 3.945
9 N -0.447 5.447
10 C 0.078 3.922
11 C 0.521 3.479
12 O -0.513 6.513
13 N -0.605 5.605
14 C 0.066 3.934
15 C 0.043 3.957
16 O -0.333 6.333
17 C 0.052 3.948
18 C 0.184 3.816
19 N -0.601 5.601
20 C -0.222 4.222
21 H 0.080 0.920
22 C -0.005 4.005
23 N -0.920 5.920
24 Si 0.912 3.088
25 H -0.288 1.288
26 H -0.291 1.291
27 H -0.281 1.281
28 C 0.101 3.899
29 C 0.100 3.900
30 H 0.075 0.925
31 H 0.078 0.922
32 H 0.088 0.912
33 H 0.141 0.859
34 H 0.139 0.861
35 H 0.158 0.842
36 H 0.166 0.834
37 H 0.084 0.916
38 H 0.089 0.911
39 H 0.054 0.946
40 H 0.104 0.896
41 H 0.083 0.917
42 H 0.046 0.954
43 H 0.254 0.746
44 H 0.042 0.958
45 H 0.044 0.956
46 H 0.104 0.896
47 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.596 4.731 -21.372 25.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C 0.007 3.993
3 H 0.115 0.885
4 O -0.187 6.187
5 C 0.036 3.964
6 C -0.197 4.197
7 C -0.149 4.149
8 C -0.102 4.102
9 N -0.155 5.155
10 C -0.081 4.081
11 C 0.307 3.693
12 O -0.387 6.387
13 N -0.341 5.341
14 C -0.058 4.058
15 C -0.035 4.035
16 O -0.250 6.250
17 C 0.010 3.990
18 C 0.058 3.942
19 N -0.327 5.327
20 C -0.350 4.350
21 H 0.098 0.902
22 C -0.202 4.202
23 N -0.567 5.567
24 Si 0.743 3.257
25 H -0.215 1.215
26 H -0.217 1.217
27 H -0.207 1.207
28 C -0.025 4.025
29 C -0.022 4.022
30 H 0.093 0.907
31 H 0.097 0.903
32 H 0.106 0.894
33 H 0.158 0.842
34 H 0.156 0.844
35 H 0.175 0.825
36 H 0.183 0.817
37 H 0.102 0.898
38 H 0.107 0.893
39 H 0.073 0.927
40 H 0.122 0.878
41 H 0.102 0.898
42 H 0.063 0.937
43 H 0.064 0.936
44 H 0.059 0.941
45 H 0.062 0.938
46 H 0.122 0.878
47 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -12.715 3.704 -21.633 25.365
hybrid contribution 0.219 1.124 1.172 1.639
sum -12.496 4.827 -20.461 24.456
Atomic orbital electron populations
1.22520 0.92377 1.05036 1.04195 1.22227 0.95929 0.96971 0.84206
0.88521 1.86251 1.80640 1.36651 1.15131 1.20270 0.96573 0.91315
0.88250 1.21788 1.03611 0.94119 1.00161 1.22012 0.98876 1.01114
0.92947 1.22702 0.97247 0.91338 0.98913 1.67766 1.14781 1.07546
1.25453 1.22292 0.98634 1.01105 0.86069 1.19873 0.80319 0.85577
0.83575 1.90756 1.39284 1.22998 1.85643 1.48094 1.55666 1.24680
1.05664 1.22685 0.96333 0.85322 1.01413 1.22901 0.98540 0.94898
0.87132 1.88068 1.71416 1.38656 1.26891 1.23788 0.90033 0.85444
0.99736 1.22206 0.86147 0.93520 0.92336 1.45806 1.28643 1.58428
0.99870 1.18977 1.01631 1.26696 0.87664 0.90234 1.24763 0.99304
0.99730 0.96376 1.69809 1.37385 1.38998 1.10460 0.86098 0.80059
0.79283 0.80295 1.21522 1.21705 1.20658 1.23042 0.91773 0.98698
0.89000 1.22368 1.00123 0.96352 0.83347 0.90654 0.90262 0.89385
0.84168 0.84355 0.82452 0.81698 0.89788 0.89329 0.92748 0.87827
0.89838 0.93653 0.93551 0.94076 0.93805 0.87770 0.90412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.25 8.76 37.16 0.33 -0.93 16
2 C 0.07 0.65 1.82 -27.88 -0.05 0.60 16
3 H 0.10 0.75 5.68 -51.93 -0.30 0.45 16
4 O -0.28 -3.29 9.35 -39.31 -0.37 -3.65 16
5 C 0.08 0.86 6.61 -39.07 -0.26 0.60 16
6 C -0.17 -1.31 8.31 -39.14 -0.33 -1.64 16
7 C -0.13 -0.86 10.11 -39.46 -0.40 -1.26 16
8 C 0.05 0.43 11.18 -17.54 -0.20 0.24 16
9 N -0.45 -4.67 10.36 -13.13 -0.14 -4.81 16
10 C 0.08 0.82 11.14 -17.37 -0.19 0.63 16
11 C 0.52 7.09 7.13 -10.98 -0.08 7.01 16
12 O -0.51 -9.20 16.00 -14.30 -0.23 -9.43 16
13 N -0.61 -7.71 3.03 -172.46 -0.52 -8.23 16
14 C 0.07 0.61 5.10 -3.58 -0.02 0.59 16
15 C 0.04 0.52 6.88 37.27 0.26 0.78 16
16 O -0.33 -5.97 10.52 -35.23 -0.37 -6.34 16
17 C 0.05 0.97 1.21 -90.31 -0.11 0.86 16
18 C 0.18 4.28 6.88 -3.17 -0.02 4.26 16
19 N -0.60 -15.60 3.70 -180.24 -0.67 -16.27 16
20 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16
21 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16
22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16
23 N -0.92 -27.25 11.47 55.49 0.64 -26.61 16
24 Si 0.91 22.29 29.56 -169.99 -5.03 17.27 16
25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
28 C 0.10 2.13 8.08 -3.17 -0.03 2.10 16
29 C 0.10 1.55 5.78 -3.66 -0.02 1.53 16
30 H 0.07 0.40 6.86 -51.93 -0.36 0.05 16
31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.09 0.45 5.45 -51.93 -0.28 0.17 16
33 H 0.14 0.75 5.57 -52.48 -0.29 0.46 16
34 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16
35 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16
36 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16
37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
38 H 0.09 0.52 4.81 -51.93 -0.25 0.27 16
39 H 0.05 0.68 7.20 -51.93 -0.37 0.31 16
40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16
41 H 0.08 2.17 7.26 -51.93 -0.38 1.79 16
42 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16
43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16
44 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16
45 H 0.04 0.90 7.28 -51.93 -0.38 0.52 16
46 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16
47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 376.40 15.07 5.67 5.67
Total: -1.00 -36.17 376.40 -8.68 -44.85
By element:
Atomic # 1 Polarization: 5.22 SS G_CDS: -6.30 Total: -1.09 kcal
Atomic # 6 Polarization: 10.01 SS G_CDS: -1.37 Total: 8.64 kcal
Atomic # 7 Polarization: -55.23 SS G_CDS: -0.69 Total: -55.92 kcal
Atomic # 8 Polarization: -18.46 SS G_CDS: -0.97 Total: -19.43 kcal
Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -36.17 -8.68 -44.85 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053423178.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.540 kcal
(2) G-P(sol) polarization free energy of solvation -36.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.367 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.686 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds