Wall clock time and date at job start Wed Apr 1 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47012 * 2 1 4 4 O 1.42900 * 109.47300 * 119.99909 * 2 1 3 5 5 C 1.35910 * 117.00331 * 275.00625 * 4 2 1 6 6 C 1.39142 * 120.47200 * 5.31229 * 5 4 2 7 7 C 1.38532 * 118.37373 * 179.71408 * 6 5 4 8 8 C 1.38254 * 119.22208 * 0.57902 * 7 6 5 9 9 N 1.31852 * 120.88669 * 359.68119 * 8 7 6 10 10 C 1.31839 * 121.77667 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47329 * 240.00388 * 2 1 3 12 12 O 1.21283 * 119.99812 * 259.89334 * 11 2 1 13 13 N 1.34777 * 120.00424 * 79.88541 * 11 2 1 14 14 C 1.44964 * 117.31771 * 356.94851 * 13 11 2 15 15 C 1.51979 * 111.88250 * 203.66195 * 14 13 11 16 16 O 1.41324 * 111.53119 * 319.32675 * 15 14 13 17 17 C 1.40790 * 118.39089 * 56.96448 * 16 15 14 18 18 H 1.08997 * 109.65269 * 188.46627 * 17 16 15 19 19 C 1.54192 * 110.21967 * 67.65609 * 17 16 15 20 20 N 1.46875 * 106.39474 * 210.34045 * 19 17 16 21 21 C 1.36940 * 125.36437 * 197.81357 * 20 19 17 22 22 H 1.07997 * 119.99834 * 180.02562 * 21 20 19 23 23 C 1.38804 * 120.00133 * 0.02926 * 21 20 19 24 24 N 1.31622 * 120.00141 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00204 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47214 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.46779 * 299.99737 * 25 23 21 28 28 H 1.48493 * 109.47234 * 59.99579 * 25 23 21 29 29 C 1.46786 * 109.26881 * 18.08187 * 20 19 17 30 30 C 1.44540 * 117.32450 * 176.94515 * 13 11 2 31 31 H 1.09003 * 109.49005 * 287.00621 * 30 13 11 32 32 H 1.09000 * 109.47235 * 55.01322 * 1 2 3 33 33 H 1.08998 * 109.47170 * 175.01724 * 1 2 3 34 34 H 1.09004 * 109.46833 * 295.01536 * 1 2 3 35 35 H 1.08005 * 120.80911 * 359.97438 * 6 5 4 36 36 H 1.07999 * 120.38867 * 180.30725 * 7 6 5 37 37 H 1.07999 * 119.55675 * 179.70586 * 8 7 6 38 38 H 1.08002 * 119.65568 * 180.02562 * 10 9 8 39 39 H 1.08996 * 108.99693 * 83.03988 * 14 13 11 40 40 H 1.08994 * 108.93631 * 324.23825 * 14 13 11 41 41 H 1.09003 * 109.06279 * 198.80223 * 15 14 13 42 42 H 1.08987 * 109.07135 * 79.85907 * 15 14 13 43 43 H 1.09005 * 110.06983 * 91.10995 * 19 17 16 44 44 H 1.09001 * 110.11930 * 329.60066 * 19 17 16 45 45 H 0.96997 * 120.00110 * 180.02562 * 24 23 21 46 46 H 1.08998 * 109.83120 * 118.16659 * 29 20 19 47 47 H 1.09002 * 109.82487 * 239.13147 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1124 0.0626 2.3043 6 6 1.6639 1.3794 2.3369 7 6 1.7878 2.0878 3.5209 8 6 2.3594 1.4724 4.6191 9 7 2.7794 0.2243 4.5532 10 6 2.6745 -0.4860 3.4475 11 6 2.0323 -0.7103 -1.2305 12 8 2.4083 -1.8610 -1.1554 13 7 2.0638 -0.0670 -2.4144 14 6 1.5379 1.2833 -2.4520 15 6 1.0949 1.6800 -3.8507 16 8 2.0021 1.2202 -4.8319 17 6 2.2780 -0.1589 -4.8949 18 1 3.0975 -0.3374 -5.5910 19 6 1.0268 -0.9321 -5.3575 20 7 1.1018 -2.2570 -4.7280 21 6 0.3999 -3.3639 -5.1246 22 1 0.5217 -4.2982 -4.5969 23 6 -0.4680 -3.2850 -6.2050 24 7 -0.6168 -2.1462 -6.8479 25 14 -1.4260 -4.7948 -6.7457 26 1 -2.2766 -4.4495 -7.9129 27 1 -0.4779 -5.8729 -7.1252 28 1 -2.2854 -5.2620 -5.6285 29 6 2.0429 -2.2059 -3.6026 30 6 2.6191 -0.7801 -3.5424 31 1 3.7019 -0.8444 -3.4347 32 1 -0.3634 0.5892 -0.8419 33 1 -0.3633 -1.0238 -0.0893 34 1 -0.3633 0.4346 0.9313 35 1 1.2261 1.8365 1.4618 36 1 1.4459 3.1103 3.5841 37 1 2.4630 2.0212 5.5434 38 1 3.0295 -1.5059 3.4318 39 1 2.3104 1.9745 -2.1150 40 1 0.6843 1.3494 -1.7774 41 1 1.0284 2.7664 -3.9083 42 1 0.1115 1.2533 -4.0472 43 1 1.0294 -1.0330 -6.4429 44 1 0.1245 -0.4141 -5.0325 45 1 -1.2235 -2.0910 -7.6027 46 1 1.5212 -2.4358 -2.6736 47 1 2.8491 -2.9219 -3.7622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083188922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:50 Heat of formation + Delta-G solvation = -9.601024 kcal Electronic energy + Delta-G solvation = -31879.825452 eV Core-core repulsion = 27644.729246 eV Total energy + Delta-G solvation = -4235.096206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40915 -40.65198 -39.01097 -37.90863 -36.02026 -35.09578 -32.90763 -32.53602 -31.91724 -30.33443 -30.09005 -28.08480 -27.51037 -25.20764 -24.59838 -23.94279 -23.50184 -23.01350 -21.09677 -19.95861 -18.83043 -18.65351 -17.74560 -17.11748 -17.02004 -16.80098 -16.37501 -15.97827 -15.68714 -15.26629 -15.03231 -14.75268 -14.67619 -14.41486 -14.13314 -13.92012 -13.83051 -13.51867 -13.34841 -12.93346 -12.66011 -12.58341 -12.37535 -12.14811 -12.13827 -11.84526 -11.52134 -11.35245 -11.15422 -10.88690 -10.80032 -10.50576 -10.43927 -10.14987 -10.12665 -9.90474 -9.79326 -9.47424 -9.07080 -8.72256 -8.63076 -8.39773 -6.84109 -5.70934 -3.09305 0.80721 0.90908 2.26772 2.51812 3.21682 3.39961 3.43895 3.45484 3.48123 3.96413 4.07757 4.21047 4.27395 4.41604 4.46807 4.48807 4.57517 4.68225 4.76174 4.80898 4.90356 5.01709 5.08773 5.26915 5.30261 5.34145 5.42345 5.50802 5.54519 5.64476 5.67872 5.71854 5.74201 5.82174 5.85696 6.03166 6.06531 6.15748 6.42225 6.73886 6.88464 7.05019 7.25544 7.30264 7.56341 7.65093 7.67458 7.81141 8.13216 8.28283 9.19131 9.79303 10.41406 11.35946 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002874 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.489901 B = 9741.433190 C =10578.235028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 H 0.094 0.906 4 O -0.276 6.276 5 C 0.086 3.914 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.053 3.947 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.511 3.489 12 O -0.496 6.496 13 N -0.582 5.582 14 C 0.064 3.936 15 C 0.059 3.941 16 O -0.368 6.368 17 C 0.069 3.931 18 H 0.115 0.885 19 C 0.141 3.859 20 N -0.603 5.603 21 C -0.221 4.221 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.925 5.925 25 Si 0.915 3.085 26 H -0.290 1.290 27 H -0.284 1.284 28 H -0.286 1.286 29 C 0.123 3.877 30 C 0.112 3.888 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.021 0.979 45 H 0.253 0.747 46 H 0.060 0.940 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 14.370 16.327 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.008 3.992 3 H 0.111 0.889 4 O -0.187 6.187 5 C 0.037 3.963 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.104 4.104 9 N -0.156 5.156 10 C -0.082 4.082 11 C 0.297 3.703 12 O -0.370 6.370 13 N -0.317 5.317 14 C -0.059 4.059 15 C -0.018 4.018 16 O -0.285 6.285 17 C 0.010 3.990 18 H 0.133 0.867 19 C 0.015 3.985 20 N -0.331 5.331 21 C -0.349 4.349 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.574 5.574 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.212 1.212 29 C -0.003 4.003 30 C 0.008 3.992 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.530 13.233 16.721 21.800 hybrid contribution -1.245 -0.162 -0.896 1.542 sum 3.285 13.071 15.825 20.787 Atomic orbital electron populations 1.22420 0.92213 1.05416 1.03675 1.22335 0.96186 0.96618 0.84072 0.88886 1.86262 1.80495 1.36508 1.15418 1.20296 0.96368 0.91196 0.88424 1.21796 1.03645 0.94088 1.00197 1.22000 0.98855 1.01136 0.92966 1.22684 0.97473 0.91374 0.98865 1.67758 1.14953 1.07426 1.25429 1.22286 0.98749 1.01047 0.86148 1.19950 0.79559 0.87014 0.83822 1.90737 1.45541 1.16037 1.84654 1.46580 1.61940 1.14659 1.08550 1.21940 0.99517 0.83570 1.00886 1.22212 0.94044 0.99896 0.85692 1.86860 1.63867 1.23632 1.54133 1.23072 1.01463 0.80544 0.93924 0.86692 1.22056 0.91098 0.84362 1.00972 1.44263 1.48981 1.07621 1.32204 1.19034 1.17048 0.88400 1.10463 0.90358 1.24787 0.99972 0.97384 0.98443 1.69845 1.40562 1.23533 1.23412 0.86143 0.79597 0.81879 0.77849 1.21581 1.21056 1.21231 1.21825 0.93751 0.91504 0.93200 1.21686 0.97258 0.94020 0.86233 0.90888 0.89598 0.89906 0.90627 0.84129 0.84415 0.82519 0.81704 0.91476 0.89712 0.87736 0.92062 0.88255 0.96079 0.93663 0.92207 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.88 37.16 0.33 -1.51 16 2 C 0.07 0.80 1.80 -27.89 -0.05 0.75 16 3 H 0.09 0.82 5.46 -51.93 -0.28 0.54 16 4 O -0.28 -3.68 9.42 -38.53 -0.36 -4.05 16 5 C 0.09 0.95 6.60 -39.07 -0.26 0.69 16 6 C -0.17 -1.46 8.32 -39.14 -0.33 -1.78 16 7 C -0.13 -0.94 10.11 -39.47 -0.40 -1.33 16 8 C 0.05 0.44 11.18 -17.54 -0.20 0.25 16 9 N -0.45 -4.91 10.36 -13.13 -0.14 -5.05 16 10 C 0.08 0.86 11.14 -17.38 -0.19 0.67 16 11 C 0.51 8.20 6.31 -10.99 -0.07 8.13 16 12 O -0.50 -9.97 13.65 -13.52 -0.18 -10.16 16 13 N -0.58 -9.00 3.09 -169.00 -0.52 -9.52 16 14 C 0.06 0.73 5.47 -5.38 -0.03 0.70 16 15 C 0.06 0.76 6.74 36.64 0.25 1.01 16 16 O -0.37 -6.11 10.25 -34.37 -0.35 -6.46 16 17 C 0.07 1.29 3.92 -26.27 -0.10 1.19 16 18 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 19 C 0.14 3.33 5.26 -3.21 -0.02 3.32 16 20 N -0.60 -15.53 3.39 -171.41 -0.58 -16.11 16 21 C -0.22 -6.24 10.25 -15.06 -0.15 -6.39 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 24 N -0.93 -26.70 10.18 55.49 0.56 -26.13 16 25 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 29 C 0.12 2.75 6.03 -3.41 -0.02 2.73 16 30 C 0.11 2.04 3.35 -68.66 -0.23 1.81 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 0.76 5.78 -51.93 -0.30 0.46 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.62 7.02 -51.93 -0.36 0.25 16 35 H 0.14 0.90 5.67 -52.48 -0.30 0.60 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.75 4.35 -51.93 -0.23 0.53 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.91 6.73 -51.94 -0.35 0.56 16 43 H 0.10 2.67 6.25 -51.93 -0.32 2.35 16 44 H 0.02 0.54 6.47 -51.93 -0.34 0.20 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 46 H 0.06 1.44 5.21 -51.93 -0.27 1.17 16 47 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -34.48 364.15 -8.78 -43.26 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.10 Total: 1.71 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -1.56 Total: 9.84 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.67 Total: -56.81 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.90 Total: -20.66 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.48 -8.78 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083188922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.655 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds