Wall clock time and date at job start Wed Apr 1 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47012 * 2 1 4 4 O 1.42900 * 109.47300 * 119.99909 * 2 1 3 5 5 C 1.35910 * 117.00331 * 275.00625 * 4 2 1 6 6 C 1.39142 * 120.47200 * 5.31229 * 5 4 2 7 7 C 1.38532 * 118.37373 * 179.71408 * 6 5 4 8 8 C 1.38254 * 119.22208 * 0.57902 * 7 6 5 9 9 N 1.31852 * 120.88669 * 359.68119 * 8 7 6 10 10 C 1.31839 * 121.77667 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47329 * 240.00388 * 2 1 3 12 12 O 1.21283 * 119.99812 * 259.89334 * 11 2 1 13 13 N 1.34777 * 120.00424 * 79.88541 * 11 2 1 14 14 C 1.44964 * 117.31771 * 356.94851 * 13 11 2 15 15 C 1.51979 * 111.88250 * 203.66195 * 14 13 11 16 16 O 1.41324 * 111.53119 * 319.32675 * 15 14 13 17 17 C 1.40790 * 118.39089 * 56.96448 * 16 15 14 18 18 H 1.08997 * 109.65269 * 188.46627 * 17 16 15 19 19 C 1.54192 * 110.21967 * 67.65609 * 17 16 15 20 20 N 1.46875 * 106.39474 * 210.34045 * 19 17 16 21 21 C 1.36940 * 125.36437 * 197.81357 * 20 19 17 22 22 H 1.07997 * 119.99834 * 180.02562 * 21 20 19 23 23 C 1.38804 * 120.00133 * 0.02926 * 21 20 19 24 24 N 1.31622 * 120.00141 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00204 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47214 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.46779 * 299.99737 * 25 23 21 28 28 H 1.48493 * 109.47234 * 59.99579 * 25 23 21 29 29 C 1.46786 * 109.26881 * 18.08187 * 20 19 17 30 30 C 1.44540 * 117.32450 * 176.94515 * 13 11 2 31 31 H 1.09003 * 109.49005 * 287.00621 * 30 13 11 32 32 H 1.09000 * 109.47235 * 55.01322 * 1 2 3 33 33 H 1.08998 * 109.47170 * 175.01724 * 1 2 3 34 34 H 1.09004 * 109.46833 * 295.01536 * 1 2 3 35 35 H 1.08005 * 120.80911 * 359.97438 * 6 5 4 36 36 H 1.07999 * 120.38867 * 180.30725 * 7 6 5 37 37 H 1.07999 * 119.55675 * 179.70586 * 8 7 6 38 38 H 1.08002 * 119.65568 * 180.02562 * 10 9 8 39 39 H 1.08996 * 108.99693 * 83.03988 * 14 13 11 40 40 H 1.08994 * 108.93631 * 324.23825 * 14 13 11 41 41 H 1.09003 * 109.06279 * 198.80223 * 15 14 13 42 42 H 1.08987 * 109.07135 * 79.85907 * 15 14 13 43 43 H 1.09005 * 110.06983 * 91.10995 * 19 17 16 44 44 H 1.09001 * 110.11930 * 329.60066 * 19 17 16 45 45 H 0.96997 * 120.00110 * 180.02562 * 24 23 21 46 46 H 1.08998 * 109.83120 * 118.16659 * 29 20 19 47 47 H 1.09002 * 109.82487 * 239.13147 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1124 0.0626 2.3043 6 6 1.6639 1.3794 2.3369 7 6 1.7878 2.0878 3.5209 8 6 2.3594 1.4724 4.6191 9 7 2.7794 0.2243 4.5532 10 6 2.6745 -0.4860 3.4475 11 6 2.0323 -0.7103 -1.2305 12 8 2.4083 -1.8610 -1.1554 13 7 2.0638 -0.0670 -2.4144 14 6 1.5379 1.2833 -2.4520 15 6 1.0949 1.6800 -3.8507 16 8 2.0021 1.2202 -4.8319 17 6 2.2780 -0.1589 -4.8949 18 1 3.0975 -0.3374 -5.5910 19 6 1.0268 -0.9321 -5.3575 20 7 1.1018 -2.2570 -4.7280 21 6 0.3999 -3.3639 -5.1246 22 1 0.5217 -4.2982 -4.5969 23 6 -0.4680 -3.2850 -6.2050 24 7 -0.6168 -2.1462 -6.8479 25 14 -1.4260 -4.7948 -6.7457 26 1 -2.2766 -4.4495 -7.9129 27 1 -0.4779 -5.8729 -7.1252 28 1 -2.2854 -5.2620 -5.6285 29 6 2.0429 -2.2059 -3.6026 30 6 2.6191 -0.7801 -3.5424 31 1 3.7019 -0.8444 -3.4347 32 1 -0.3634 0.5892 -0.8419 33 1 -0.3633 -1.0238 -0.0893 34 1 -0.3633 0.4346 0.9313 35 1 1.2261 1.8365 1.4618 36 1 1.4459 3.1103 3.5841 37 1 2.4630 2.0212 5.5434 38 1 3.0295 -1.5059 3.4318 39 1 2.3104 1.9745 -2.1150 40 1 0.6843 1.3494 -1.7774 41 1 1.0284 2.7664 -3.9083 42 1 0.1115 1.2533 -4.0472 43 1 1.0294 -1.0330 -6.4429 44 1 0.1245 -0.4141 -5.0325 45 1 -1.2235 -2.0910 -7.6027 46 1 1.5212 -2.4358 -2.6736 47 1 2.8491 -2.9219 -3.7622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083188922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:49 Heat of formation + Delta-G solvation = -34.175733 kcal Electronic energy + Delta-G solvation = -31880.891091 eV Core-core repulsion = 27644.729246 eV Total energy + Delta-G solvation = -4236.161846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53032 -41.58210 -40.12003 -38.96232 -37.69768 -36.36349 -34.54293 -33.27999 -33.04645 -31.70007 -31.02198 -29.62229 -29.11761 -26.75951 -25.76692 -24.79775 -24.68500 -23.92431 -22.61623 -21.42106 -20.04148 -19.60385 -19.16119 -18.47541 -18.25620 -17.71597 -17.50415 -17.04060 -16.83116 -16.67838 -16.29694 -16.19797 -15.74712 -15.53556 -15.32880 -15.08693 -14.84736 -14.64731 -14.55444 -14.16273 -14.02213 -13.89728 -13.58470 -13.33229 -13.27955 -13.07893 -12.85333 -12.76744 -12.58909 -12.43210 -12.24215 -12.20238 -12.12551 -11.85612 -11.68199 -10.91130 -10.78772 -10.74209 -10.57323 -10.43010 -9.68486 -9.47850 -8.92602 -7.86345 -5.28109 0.15366 0.24205 1.23860 1.34232 1.42575 1.45500 1.52238 2.22127 2.44546 2.73706 2.80669 3.06685 3.26323 3.43644 3.52703 3.57384 3.66375 3.70624 3.72928 3.74782 3.86171 3.90727 3.99133 4.14839 4.16875 4.23969 4.34679 4.36630 4.45051 4.49808 4.56792 4.69788 4.78184 4.83905 4.96383 4.99285 5.01259 5.06906 5.10960 5.35977 5.43060 5.46375 5.51454 5.66260 6.00662 6.18454 6.19946 6.39421 6.93112 6.97683 7.05926 7.70236 8.31174 9.17628 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002874 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.489901 B = 9741.433190 C =10578.235028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.135 0.865 4 O -0.307 6.307 5 C 0.065 3.935 6 C -0.165 4.165 7 C -0.117 4.117 8 C 0.047 3.953 9 N -0.474 5.474 10 C 0.051 3.949 11 C 0.502 3.498 12 O -0.551 6.551 13 N -0.585 5.585 14 C 0.056 3.944 15 C 0.049 3.951 16 O -0.370 6.370 17 C 0.089 3.911 18 H 0.123 0.877 19 C 0.150 3.850 20 N -0.620 5.620 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.058 4.058 24 N -0.945 5.945 25 Si 0.980 3.020 26 H -0.287 1.287 27 H -0.277 1.277 28 H -0.281 1.281 29 C 0.124 3.876 30 C 0.124 3.876 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.155 0.845 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.153 0.847 42 H 0.035 0.965 43 H 0.064 0.936 44 H -0.001 1.001 45 H 0.250 0.750 46 H 0.042 0.958 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 18.047 17.777 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.018 3.982 3 H 0.152 0.848 4 O -0.219 6.219 5 C 0.017 3.983 6 C -0.192 4.192 7 C -0.137 4.137 8 C -0.110 4.110 9 N -0.183 5.183 10 C -0.106 4.106 11 C 0.290 3.710 12 O -0.428 6.428 13 N -0.319 5.319 14 C -0.065 4.065 15 C -0.028 4.028 16 O -0.287 6.287 17 C 0.030 3.970 18 H 0.141 0.859 19 C 0.025 3.975 20 N -0.348 5.348 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.251 4.251 24 N -0.593 5.593 25 Si 0.807 3.193 26 H -0.213 1.213 27 H -0.203 1.203 28 H -0.207 1.207 29 C -0.001 4.001 30 C 0.019 3.981 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.187 0.813 36 H 0.196 0.804 37 H 0.202 0.798 38 H 0.172 0.828 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.170 0.830 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.017 0.983 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.128 16.949 18.190 25.203 hybrid contribution -1.151 -1.227 -1.250 2.096 sum 2.977 15.722 16.940 23.303 Atomic orbital electron populations 1.22428 0.91051 1.03949 1.05840 1.22347 0.96737 0.97406 0.81755 0.84809 1.86225 1.81253 1.38033 1.16368 1.20387 0.97845 0.92511 0.87517 1.22144 1.02566 0.92696 1.01761 1.22436 0.97006 1.02588 0.91632 1.23305 0.96454 0.90606 1.00620 1.67750 1.16142 1.08951 1.25461 1.22237 1.00150 1.01222 0.87014 1.20834 0.78442 0.86631 0.85113 1.90708 1.47936 1.18543 1.85589 1.46708 1.61632 1.16101 1.07470 1.22345 1.01940 0.81703 1.00494 1.22612 0.91994 1.02338 0.85824 1.86866 1.64572 1.21472 1.55811 1.22674 0.98863 0.81383 0.94118 0.85903 1.21806 0.92908 0.84105 0.98688 1.44508 1.49164 1.07828 1.33328 1.19306 1.17986 0.89247 1.10981 0.91059 1.25587 1.00853 1.00275 0.98389 1.70079 1.40740 1.25099 1.23419 0.85145 0.78190 0.78632 0.77309 1.21259 1.20340 1.20732 1.21823 0.92598 0.94483 0.91237 1.21361 0.97800 0.91699 0.87270 0.89540 0.87903 0.93246 0.87850 0.81317 0.80366 0.79813 0.82817 0.87343 0.86788 0.82980 0.94661 0.91838 0.98350 0.94047 0.93983 0.96103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.88 71.98 0.64 -2.54 16 2 C 0.08 1.65 1.80 29.85 0.05 1.70 16 3 H 0.13 1.70 5.46 -2.39 -0.01 1.68 16 4 O -0.31 -8.05 9.42 -74.30 -0.70 -8.75 16 5 C 0.06 1.36 6.60 22.60 0.15 1.51 16 6 C -0.17 -2.14 8.32 22.56 0.19 -1.95 16 7 C -0.12 -1.14 10.11 22.34 0.23 -0.92 16 8 C 0.05 0.65 11.18 84.69 0.95 1.60 16 9 N -0.47 -10.02 10.36 -195.44 -2.02 -12.04 16 10 C 0.05 1.17 11.14 84.80 0.94 2.11 16 11 C 0.50 15.86 6.31 87.66 0.55 16.41 16 12 O -0.55 -23.08 13.65 15.20 0.21 -22.88 16 13 N -0.58 -17.20 3.09 -806.97 -2.49 -19.69 16 14 C 0.06 1.05 5.47 86.33 0.47 1.52 16 15 C 0.05 1.11 6.74 71.65 0.48 1.59 16 16 O -0.37 -11.58 10.25 -145.88 -1.50 -13.07 16 17 C 0.09 3.33 3.92 30.89 0.12 3.45 16 18 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 19 C 0.15 7.40 5.26 86.71 0.46 7.86 16 20 N -0.62 -33.46 3.39 -696.22 -2.36 -35.82 16 21 C -0.25 -14.50 10.25 84.03 0.86 -13.64 16 22 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 23 C -0.06 -3.34 5.48 84.86 0.47 -2.88 16 24 N -0.94 -56.24 10.18 21.65 0.22 -56.01 16 25 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 29 C 0.12 5.81 6.03 86.63 0.52 6.33 16 30 C 0.12 4.51 3.35 45.56 0.15 4.66 16 31 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.10 1.46 5.78 -2.39 -0.01 1.45 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.30 7.02 -2.39 -0.02 1.28 16 35 H 0.17 1.12 5.67 -2.91 -0.02 1.11 16 36 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 37 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.11 1.46 4.35 -2.39 -0.01 1.45 16 41 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.00 6.73 -2.39 -0.02 0.98 16 43 H 0.06 3.57 6.25 -2.38 -0.01 3.56 16 44 H 0.00 -0.07 6.47 -2.39 -0.02 -0.09 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.04 2.15 5.21 -2.39 -0.01 2.14 16 47 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -82.43 364.15 1.63 -80.80 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.01 Total: 11.98 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 7.23 Total: 26.83 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -6.65 Total: -123.57 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.99 Total: -44.71 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -82.43 1.63 -80.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083188922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.627 kcal (2) G-P(sol) polarization free energy of solvation -82.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds