Wall clock time and date at job start Wed Apr 1 2020 05:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.34769 * 119.99686 * 84.99974 * 4 2 1 6 6 O 1.21614 * 120.00733 * 0.02562 * 5 4 2 7 7 C 1.47379 * 119.99750 * 180.02562 * 5 4 2 8 8 C 1.47021 * 127.19528 * 179.97438 * 7 5 4 9 9 C 1.34180 * 105.95696 * 180.02562 * 8 7 5 10 10 O 1.34213 * 109.12155 * 359.97438 * 9 8 7 11 11 C 1.33652 * 110.91081 * 359.73242 * 10 9 8 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 O 1.21278 * 119.99985 * 119.99692 * 12 2 1 14 14 N 1.34777 * 120.00161 * 300.00385 * 12 2 1 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 2 16 16 H 1.08997 * 110.56139 * 34.29359 * 15 14 12 17 17 C 1.54852 * 110.62514 * 271.39476 * 15 14 12 18 18 C 1.55838 * 103.44753 * 241.50903 * 17 15 14 19 19 H 1.09004 * 115.56363 * 158.80906 * 18 17 15 20 20 C 1.55845 * 105.06489 * 287.42637 * 18 17 15 21 21 C 1.54847 * 103.45047 * 71.82198 * 20 18 17 22 22 C 1.55846 * 110.62669 * 157.19672 * 15 14 12 23 23 H 1.09001 * 115.55996 * 318.92184 * 22 15 14 24 24 N 1.50245 * 101.05127 * 32.93698 * 18 17 15 25 25 C 1.36943 * 130.83808 * 126.01237 * 24 18 17 26 26 H 1.07999 * 119.99528 * 180.02562 * 25 24 18 27 27 C 1.38813 * 119.99799 * 0.02562 * 25 24 18 28 28 N 1.31618 * 120.00275 * 0.02562 * 27 25 24 29 29 Si 1.86795 * 119.99564 * 179.97438 * 27 25 24 30 30 H 1.48496 * 109.47565 * 0.02562 * 29 27 25 31 31 H 1.48504 * 109.47140 * 120.00753 * 29 27 25 32 32 H 1.48503 * 109.47328 * 240.00381 * 29 27 25 33 33 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 34 34 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 35 35 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 36 36 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 37 37 H 1.08000 * 127.02117 * 359.97438 * 8 7 5 38 38 H 1.08002 * 125.43595 * 180.02562 * 9 8 7 39 39 H 1.07997 * 125.80312 * 180.28648 * 11 10 9 40 40 H 0.97005 * 119.99463 * 359.97438 * 14 12 2 41 41 H 1.09004 * 110.62884 * 0.02562 * 17 15 14 42 42 H 1.09006 * 110.62662 * 123.01994 * 17 15 14 43 43 H 1.09002 * 110.62523 * 190.31534 * 20 18 17 44 44 H 1.09000 * 110.62305 * 313.33157 * 20 18 17 45 45 H 1.08999 * 110.62656 * 118.48548 * 21 20 18 46 46 H 1.08994 * 110.62952 * 241.51573 * 21 20 18 47 47 H 0.97001 * 120.00056 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3570 6 8 1.8584 1.1618 -2.4117 7 6 2.6380 -0.7132 -3.5605 8 6 2.8374 -0.1389 -4.8992 9 6 3.2934 -1.1410 -5.6662 10 8 3.3876 -2.2551 -4.9238 11 6 3.0079 -2.0222 -3.6637 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7067 -0.2500 2.4546 15 6 2.1954 -0.9402 3.6508 16 1 3.1901 -1.3504 3.4765 17 6 1.2114 -2.0578 4.0760 18 6 0.7572 -1.6180 5.5004 19 1 -0.1844 -2.0445 5.8464 20 6 1.9904 -1.8782 6.4171 21 6 2.9893 -0.7710 5.9999 22 6 2.2058 0.0239 4.8752 23 1 2.5509 1.0378 4.6726 24 7 0.7879 -0.1221 5.3635 25 6 -0.1761 0.8194 5.6073 26 1 0.0381 1.8657 5.4464 27 6 -1.4285 0.4290 6.0612 28 7 -1.6893 -0.8460 6.2577 29 14 -2.7432 1.7134 6.3944 30 1 -2.2022 3.0642 6.0977 31 1 -3.9216 1.4516 5.5293 32 1 -3.1514 1.6456 7.8206 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 2.2491 -1.6318 -1.1525 37 1 2.6536 0.8810 -5.2032 38 1 3.5453 -1.0632 -6.7135 39 1 2.9934 -2.7477 -2.8638 40 1 1.1492 0.5389 2.5435 41 1 0.3600 -2.0987 3.3966 42 1 1.7189 -3.0217 4.1153 43 1 1.7172 -1.7731 7.4671 44 1 2.4098 -2.8658 6.2254 45 1 3.2115 -0.1167 6.8429 46 1 3.9040 -1.2094 5.6012 47 1 -2.5643 -1.1188 6.5752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110590820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:11 Heat of formation + Delta-G solvation = -9.407173 kcal Electronic energy + Delta-G solvation = -30686.526908 eV Core-core repulsion = 26451.439107 eV Total energy + Delta-G solvation = -4235.087800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.83310 -40.33662 -39.34357 -38.29686 -35.00427 -34.00133 -33.22340 -32.58451 -31.21002 -29.67031 -29.17634 -28.73540 -27.64085 -25.03368 -24.27684 -23.37464 -21.78610 -21.36348 -20.28446 -19.95702 -19.84351 -18.97701 -18.60437 -17.07631 -16.92052 -16.63321 -16.43361 -15.93973 -15.43809 -15.14204 -15.00767 -14.81272 -14.51460 -14.03371 -13.87616 -13.66120 -13.40092 -13.20858 -13.00605 -12.69297 -12.60673 -12.33289 -12.05870 -11.89528 -11.65711 -11.30169 -11.17011 -10.98449 -10.95237 -10.57668 -10.40687 -10.23012 -10.12112 -10.11672 -9.96838 -9.81717 -9.41341 -9.27601 -9.17516 -9.08639 -9.02215 -8.57563 -7.00728 -5.79896 -3.19365 1.06044 1.77728 2.58649 2.74278 2.81471 3.17277 3.33019 3.38927 3.41321 3.57596 4.28892 4.35803 4.37700 4.70877 4.84222 5.02238 5.06409 5.10196 5.21463 5.29313 5.35041 5.55043 5.58847 5.60589 5.64819 5.75383 5.77479 5.96226 5.99897 6.02895 6.08417 6.13104 6.20417 6.24754 6.35777 6.43472 6.53782 6.61966 6.67408 6.76971 6.88502 7.01991 7.26149 7.34100 7.42075 7.73376 7.81896 8.05138 8.11319 8.41159 9.01818 9.64964 10.45405 11.28874 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002470 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.429270 B =11331.741623 C =12401.261875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.114 0.886 4 N -0.707 5.707 5 C 0.590 3.410 6 O -0.537 6.537 7 C -0.234 4.234 8 C -0.164 4.164 9 C -0.043 4.043 10 O -0.174 6.174 11 C 0.025 3.975 12 C 0.509 3.491 13 O -0.552 6.552 14 N -0.696 5.696 15 C 0.128 3.872 16 H 0.079 0.921 17 C -0.142 4.142 18 C 0.154 3.846 19 H 0.152 0.848 20 C -0.140 4.140 21 C -0.128 4.128 22 C 0.124 3.876 23 H 0.090 0.910 24 N -0.589 5.589 25 C -0.215 4.215 26 H 0.079 0.921 27 C -0.009 4.009 28 N -0.918 5.918 29 Si 0.914 3.086 30 H -0.280 1.280 31 H -0.291 1.291 32 H -0.291 1.291 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.407 0.593 37 H 0.160 0.840 38 H 0.209 0.791 39 H 0.213 0.787 40 H 0.405 0.595 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -2.680 -17.188 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.131 0.869 4 N -0.360 5.360 5 C 0.378 3.622 6 O -0.415 6.415 7 C -0.239 4.239 8 C -0.184 4.184 9 C -0.109 4.109 10 O -0.069 6.069 11 C -0.045 4.045 12 C 0.293 3.707 13 O -0.431 6.431 14 N -0.345 5.345 15 C 0.022 3.978 16 H 0.097 0.903 17 C -0.182 4.182 18 C 0.048 3.952 19 H 0.169 0.831 20 C -0.179 4.179 21 C -0.168 4.168 22 C 0.015 3.985 23 H 0.108 0.892 24 N -0.310 5.310 25 C -0.343 4.343 26 H 0.097 0.903 27 C -0.205 4.205 28 N -0.566 5.566 29 Si 0.745 3.255 30 H -0.206 1.206 31 H -0.218 1.218 32 H -0.218 1.218 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.244 0.756 37 H 0.178 0.822 38 H 0.225 0.775 39 H 0.230 0.770 40 H 0.240 0.760 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.071 -2.677 -17.281 19.700 hybrid contribution -0.862 0.744 0.365 1.196 sum 8.209 -1.933 -16.916 18.902 Atomic orbital electron populations 1.22134 0.92430 1.03364 1.03889 1.20801 0.95951 0.98010 0.83446 0.86864 1.45574 1.67373 1.14619 1.08442 1.17222 0.77133 0.86076 0.81803 1.90791 1.50450 1.15347 1.84919 1.21495 1.11938 0.94659 0.95787 1.22791 1.03616 1.00952 0.91026 1.23961 1.05730 0.83373 0.97802 1.83804 1.66634 1.36738 1.19749 1.24561 0.97808 0.96825 0.85333 1.20408 0.80493 0.84803 0.84979 1.90643 1.39049 1.26672 1.86730 1.45968 1.51880 1.31709 1.04968 1.22683 0.96911 0.94342 0.83840 0.90272 1.23453 0.97884 0.95958 1.00915 1.23715 0.97703 0.83911 0.89894 0.83089 1.23046 0.97966 0.96159 1.00734 1.23304 0.96874 0.98014 0.98654 1.23733 0.87828 0.95530 0.91418 0.89159 1.46601 1.06712 1.02524 1.75123 1.19053 0.90163 0.87671 1.37419 0.90287 1.24704 0.97602 0.96250 1.01960 1.69472 1.21756 1.13434 1.51950 0.86002 0.81643 0.80211 0.77617 1.20559 1.21800 1.21818 0.90194 0.91009 0.91708 0.75644 0.82250 0.77450 0.77028 0.75952 0.92203 0.92828 0.92611 0.93271 0.92474 0.92972 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.38 37.16 0.35 -1.63 16 2 C 0.13 1.65 2.98 -69.08 -0.21 1.44 16 3 H 0.11 1.50 7.58 -51.93 -0.39 1.10 16 4 N -0.71 -8.59 4.94 -56.02 -0.28 -8.87 16 5 C 0.59 7.79 7.78 -12.54 -0.10 7.69 16 6 O -0.54 -8.79 16.65 5.27 0.09 -8.71 16 7 C -0.23 -2.54 6.31 -103.27 -0.65 -3.19 16 8 C -0.16 -1.55 11.01 -37.45 -0.41 -1.96 16 9 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 10 O -0.17 -1.45 10.52 7.66 0.08 -1.37 16 11 C 0.03 0.21 11.61 30.08 0.35 0.56 16 12 C 0.51 7.75 7.22 -10.98 -0.08 7.67 16 13 O -0.55 -9.62 15.52 5.56 0.09 -9.53 16 14 N -0.70 -11.04 4.98 -51.40 -0.26 -11.30 16 15 C 0.13 2.25 2.75 -65.44 -0.18 2.07 16 16 H 0.08 1.39 7.31 -51.93 -0.38 1.01 16 17 C -0.14 -2.74 6.22 -24.24 -0.15 -2.89 16 18 C 0.15 3.37 4.67 -62.80 -0.29 3.08 16 19 H 0.15 3.82 5.52 -51.93 -0.29 3.54 16 20 C -0.14 -2.66 6.45 -24.24 -0.16 -2.82 16 21 C -0.13 -2.23 6.53 -22.75 -0.15 -2.38 16 22 C 0.12 2.29 5.20 -61.06 -0.32 1.97 16 23 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 24 N -0.59 -13.33 3.01 -143.90 -0.43 -13.76 16 25 C -0.22 -5.42 10.59 -15.06 -0.16 -5.58 16 26 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 27 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 28 N -0.92 -25.03 10.47 55.49 0.58 -24.45 16 29 Si 0.91 20.95 29.55 -169.99 -5.02 15.92 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 31 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 32 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 33 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.41 4.41 6.76 -40.82 -0.28 4.13 16 37 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.21 1.12 7.47 -52.49 -0.39 0.72 16 40 H 0.41 6.26 8.06 -40.82 -0.33 5.93 16 41 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 42 H 0.05 0.97 7.80 -51.93 -0.40 0.57 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.84 7.80 -51.93 -0.41 0.43 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 47 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -31.68 387.85 -7.79 -39.47 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.59 Total: 13.02 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.90 Total: 3.74 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.39 Total: -58.38 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.25 Total: -19.61 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.68 -7.79 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110590820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.063 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds