Wall clock time and date at job start Wed Apr 1 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.34769 * 119.99686 * 84.99974 * 4 2 1 6 6 O 1.21614 * 120.00733 * 0.02562 * 5 4 2 7 7 C 1.47379 * 119.99750 * 180.02562 * 5 4 2 8 8 C 1.47021 * 127.19528 * 179.97438 * 7 5 4 9 9 C 1.34180 * 105.95696 * 180.02562 * 8 7 5 10 10 O 1.34213 * 109.12155 * 359.97438 * 9 8 7 11 11 C 1.33652 * 110.91081 * 359.73242 * 10 9 8 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 O 1.21278 * 119.99985 * 119.99692 * 12 2 1 14 14 N 1.34777 * 120.00161 * 300.00385 * 12 2 1 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 2 16 16 H 1.08997 * 110.56139 * 34.29359 * 15 14 12 17 17 C 1.54852 * 110.62514 * 271.39476 * 15 14 12 18 18 C 1.55838 * 103.44753 * 241.50903 * 17 15 14 19 19 H 1.09004 * 115.56363 * 158.80906 * 18 17 15 20 20 C 1.55845 * 105.06489 * 287.42637 * 18 17 15 21 21 C 1.54847 * 103.45047 * 71.82198 * 20 18 17 22 22 C 1.55846 * 110.62669 * 157.19672 * 15 14 12 23 23 H 1.09001 * 115.55996 * 318.92184 * 22 15 14 24 24 N 1.50245 * 101.05127 * 32.93698 * 18 17 15 25 25 C 1.36943 * 130.83808 * 126.01237 * 24 18 17 26 26 H 1.07999 * 119.99528 * 180.02562 * 25 24 18 27 27 C 1.38813 * 119.99799 * 0.02562 * 25 24 18 28 28 N 1.31618 * 120.00275 * 0.02562 * 27 25 24 29 29 Si 1.86795 * 119.99564 * 179.97438 * 27 25 24 30 30 H 1.48496 * 109.47565 * 0.02562 * 29 27 25 31 31 H 1.48504 * 109.47140 * 120.00753 * 29 27 25 32 32 H 1.48503 * 109.47328 * 240.00381 * 29 27 25 33 33 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 34 34 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 35 35 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 36 36 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 37 37 H 1.08000 * 127.02117 * 359.97438 * 8 7 5 38 38 H 1.08002 * 125.43595 * 180.02562 * 9 8 7 39 39 H 1.07997 * 125.80312 * 180.28648 * 11 10 9 40 40 H 0.97005 * 119.99463 * 359.97438 * 14 12 2 41 41 H 1.09004 * 110.62884 * 0.02562 * 17 15 14 42 42 H 1.09006 * 110.62662 * 123.01994 * 17 15 14 43 43 H 1.09002 * 110.62523 * 190.31534 * 20 18 17 44 44 H 1.09000 * 110.62305 * 313.33157 * 20 18 17 45 45 H 1.08999 * 110.62656 * 118.48548 * 21 20 18 46 46 H 1.08994 * 110.62952 * 241.51573 * 21 20 18 47 47 H 0.97001 * 120.00056 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3570 6 8 1.8584 1.1618 -2.4117 7 6 2.6380 -0.7132 -3.5605 8 6 2.8374 -0.1389 -4.8992 9 6 3.2934 -1.1410 -5.6662 10 8 3.3876 -2.2551 -4.9238 11 6 3.0079 -2.0222 -3.6637 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7067 -0.2500 2.4546 15 6 2.1954 -0.9402 3.6508 16 1 3.1901 -1.3504 3.4765 17 6 1.2114 -2.0578 4.0760 18 6 0.7572 -1.6180 5.5004 19 1 -0.1844 -2.0445 5.8464 20 6 1.9904 -1.8782 6.4171 21 6 2.9893 -0.7710 5.9999 22 6 2.2058 0.0239 4.8752 23 1 2.5509 1.0378 4.6726 24 7 0.7879 -0.1221 5.3635 25 6 -0.1761 0.8194 5.6073 26 1 0.0381 1.8657 5.4464 27 6 -1.4285 0.4290 6.0612 28 7 -1.6893 -0.8460 6.2577 29 14 -2.7432 1.7134 6.3944 30 1 -2.2022 3.0642 6.0977 31 1 -3.9216 1.4516 5.5293 32 1 -3.1514 1.6456 7.8206 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 2.2491 -1.6318 -1.1525 37 1 2.6536 0.8810 -5.2032 38 1 3.5453 -1.0632 -6.7135 39 1 2.9934 -2.7477 -2.8638 40 1 1.1492 0.5389 2.5435 41 1 0.3600 -2.0987 3.3966 42 1 1.7189 -3.0217 4.1153 43 1 1.7172 -1.7731 7.4671 44 1 2.4098 -2.8658 6.2254 45 1 3.2115 -0.1167 6.8429 46 1 3.9040 -1.2094 5.6012 47 1 -2.5643 -1.1188 6.5752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110590820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:10 Heat of formation + Delta-G solvation = -30.547857 kcal Electronic energy + Delta-G solvation = -30687.443636 eV Core-core repulsion = 26451.439107 eV Total energy + Delta-G solvation = -4236.004529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.48582 -41.57605 -40.63366 -39.63632 -36.11748 -35.39754 -34.42737 -33.95915 -32.16022 -30.95977 -30.51305 -30.15883 -29.11155 -26.24531 -25.90988 -24.40148 -22.72380 -22.39035 -21.53674 -21.21356 -21.14506 -20.34979 -19.62762 -18.80470 -17.96375 -17.79472 -17.13716 -17.03028 -16.78935 -16.48974 -16.28255 -15.88502 -15.78442 -15.52584 -15.23863 -14.81972 -14.55066 -14.44629 -13.85083 -13.81676 -13.66739 -13.61760 -13.44689 -13.28777 -12.89103 -12.85792 -12.76381 -12.73758 -12.66425 -12.07818 -11.91649 -11.85703 -11.67387 -11.30141 -11.21902 -10.95206 -10.93679 -10.87620 -10.70012 -10.31367 -9.97580 -9.75241 -8.84848 -7.74193 -5.13578 0.31570 1.12595 1.49050 1.50173 1.51647 1.59359 1.71219 2.06575 2.24506 2.41495 2.51458 3.38846 3.46219 3.51585 3.63354 3.77331 3.95208 4.00953 4.01941 4.11530 4.13489 4.23956 4.48546 4.49534 4.52006 4.59121 4.66226 4.70004 4.72706 4.76545 4.84270 4.93898 4.99554 5.08247 5.10769 5.18250 5.20327 5.21684 5.33461 5.40335 5.53185 5.59789 5.72474 5.92036 5.97945 6.29914 6.38933 6.53924 7.05801 7.08334 7.14111 7.74631 8.60085 9.32853 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002470 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.429270 B =11331.741623 C =12401.261875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 H 0.114 0.886 4 N -0.700 5.700 5 C 0.590 3.410 6 O -0.577 6.577 7 C -0.270 4.270 8 C -0.195 4.195 9 C -0.022 4.022 10 O -0.176 6.176 11 C 0.044 3.956 12 C 0.514 3.486 13 O -0.570 6.570 14 N -0.696 5.696 15 C 0.141 3.859 16 H 0.090 0.910 17 C -0.131 4.131 18 C 0.140 3.860 19 H 0.114 0.886 20 C -0.133 4.133 21 C -0.119 4.119 22 C 0.124 3.876 23 H 0.105 0.895 24 N -0.609 5.609 25 C -0.210 4.210 26 H 0.085 0.915 27 C -0.066 4.066 28 N -0.946 5.946 29 Si 0.970 3.030 30 H -0.267 1.267 31 H -0.298 1.298 32 H -0.301 1.301 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.414 0.586 37 H 0.157 0.843 38 H 0.249 0.751 39 H 0.241 0.759 40 H 0.408 0.592 41 H 0.037 0.963 42 H 0.067 0.933 43 H 0.035 0.965 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.985 -2.983 -18.761 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.025 3.975 3 H 0.131 0.869 4 N -0.353 5.353 5 C 0.380 3.620 6 O -0.458 6.458 7 C -0.274 4.274 8 C -0.215 4.215 9 C -0.088 4.088 10 O -0.071 6.071 11 C -0.027 4.027 12 C 0.300 3.700 13 O -0.450 6.450 14 N -0.345 5.345 15 C 0.034 3.966 16 H 0.108 0.892 17 C -0.171 4.171 18 C 0.033 3.967 19 H 0.131 0.869 20 C -0.173 4.173 21 C -0.159 4.159 22 C 0.016 3.984 23 H 0.123 0.877 24 N -0.330 5.330 25 C -0.339 4.339 26 H 0.103 0.897 27 C -0.258 4.258 28 N -0.596 5.596 29 Si 0.800 3.200 30 H -0.191 1.191 31 H -0.226 1.226 32 H -0.229 1.229 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.252 0.748 37 H 0.175 0.825 38 H 0.265 0.735 39 H 0.257 0.743 40 H 0.243 0.757 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.090 -2.986 -18.872 22.092 hybrid contribution -1.414 0.787 0.803 1.807 sum 9.676 -2.200 -18.068 20.614 Atomic orbital electron populations 1.22064 0.91917 1.03280 1.03827 1.20692 0.96189 0.97779 0.82878 0.86854 1.45516 1.67012 1.14865 1.07942 1.17567 0.76307 0.85671 0.82433 1.90761 1.52439 1.17066 1.85557 1.21485 1.14380 0.96038 0.95535 1.22960 1.05600 1.01787 0.91140 1.24659 1.03219 0.82002 0.98880 1.83850 1.66278 1.37169 1.19761 1.25010 0.95567 0.96236 0.85847 1.20640 0.79809 0.84381 0.85160 1.90631 1.39861 1.27497 1.86997 1.45919 1.52000 1.31721 1.04874 1.22474 0.96695 0.93413 0.83975 0.89210 1.23303 0.97634 0.97383 0.98813 1.23549 0.97433 0.83773 0.91911 0.86902 1.22952 0.97253 0.98178 0.98886 1.23259 0.97256 0.97188 0.98206 1.23951 0.85683 0.96794 0.91928 0.87715 1.46772 1.08164 1.02584 1.75457 1.19370 0.90627 0.88518 1.35387 0.89700 1.25367 0.99571 0.97603 1.03291 1.69719 1.21439 1.14806 1.53673 0.85117 0.79360 0.79074 0.76415 1.19146 1.22605 1.22905 0.90262 0.91038 0.91765 0.74754 0.82508 0.73481 0.74348 0.75672 0.94409 0.91419 0.94562 0.90971 0.92444 0.89877 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.38 71.98 0.68 -3.03 16 2 C 0.13 3.37 2.98 44.25 0.13 3.50 16 3 H 0.11 2.93 7.58 -2.39 -0.02 2.91 16 4 N -0.70 -16.37 4.94 -449.40 -2.22 -18.59 16 5 C 0.59 15.41 7.78 86.65 0.67 16.08 16 6 O -0.58 -19.16 16.65 -4.07 -0.07 -19.22 16 7 C -0.27 -5.60 6.31 -18.99 -0.12 -5.72 16 8 C -0.20 -3.49 11.01 23.65 0.26 -3.23 16 9 C -0.02 -0.26 12.03 66.89 0.80 0.55 16 10 O -0.18 -2.45 10.52 4.49 0.05 -2.40 16 11 C 0.04 0.64 11.61 67.40 0.78 1.42 16 12 C 0.51 14.94 7.22 87.66 0.63 15.57 16 13 O -0.57 -18.75 15.52 -3.02 -0.05 -18.80 16 14 N -0.70 -21.08 4.98 -434.92 -2.16 -23.25 16 15 C 0.14 4.64 2.75 46.61 0.13 4.77 16 16 H 0.09 2.85 7.31 -2.39 -0.02 2.83 16 17 C -0.13 -4.94 6.22 32.21 0.20 -4.74 16 18 C 0.14 6.12 4.67 46.22 0.22 6.33 16 19 H 0.11 5.93 5.52 -2.38 -0.01 5.92 16 20 C -0.13 -4.91 6.45 32.21 0.21 -4.71 16 21 C -0.12 -3.83 6.53 33.17 0.22 -3.61 16 22 C 0.12 4.32 5.20 47.11 0.24 4.56 16 23 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 24 N -0.61 -27.27 3.01 -609.17 -1.83 -29.10 16 25 C -0.21 -10.56 10.59 84.03 0.89 -9.67 16 26 H 0.09 4.07 7.83 -2.91 -0.02 4.04 16 27 C -0.07 -3.48 5.50 84.86 0.47 -3.01 16 28 N -0.95 -53.30 10.47 21.65 0.23 -53.07 16 29 Si 0.97 43.75 29.55 68.60 2.03 45.78 16 30 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 31 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 32 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 33 H 0.08 1.93 7.56 -2.39 -0.02 1.91 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.41 8.36 6.76 -92.71 -0.63 7.73 16 37 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 38 H 0.25 0.56 8.06 -2.91 -0.02 0.53 16 39 H 0.24 1.84 7.47 -2.91 -0.02 1.81 16 40 H 0.41 12.13 8.06 -92.70 -0.75 11.38 16 41 H 0.04 1.57 7.98 -2.39 -0.02 1.55 16 42 H 0.07 2.33 7.80 -2.38 -0.02 2.32 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 2.30 7.80 -2.39 -0.02 2.28 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 2.19 7.85 -2.39 -0.02 2.17 16 47 H 0.24 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -69.60 387.85 2.02 -67.58 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.35 Total: 36.01 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.41 Total: 15.06 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -5.99 Total: -124.01 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.07 Total: -40.42 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.60 2.02 -67.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110590820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.029 kcal (2) G-P(sol) polarization free energy of solvation -69.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds