Wall clock time and date at job start Wed Apr 1 2020 04:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50698 * 109.47083 * 119.99929 * 2 1 3 5 5 H 1.07999 * 120.00218 * 119.99917 * 4 2 1 6 6 C 1.37878 * 120.00017 * 300.00077 * 4 2 1 7 7 N 1.31519 * 119.99868 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00121 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46974 * 269.99850 * 8 6 4 10 10 H 1.48499 * 109.46958 * 29.99771 * 8 6 4 11 11 H 1.48496 * 109.47098 * 150.00119 * 8 6 4 12 12 N 1.46505 * 109.47056 * 239.99722 * 2 1 3 13 13 C 1.34774 * 119.99558 * 84.99908 * 12 2 1 14 14 O 1.21352 * 120.00535 * 0.02562 * 13 12 2 15 15 C 1.49356 * 119.99401 * 179.97438 * 13 12 2 16 16 O 1.21372 * 120.00489 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99818 * 180.02562 * 15 13 12 18 18 C 1.39721 * 120.00136 * 175.38289 * 17 15 13 19 19 C 1.38931 * 120.07750 * 214.81722 * 18 17 15 20 20 C 1.38094 * 119.92771 * 179.76452 * 19 18 17 21 21 C 1.38300 * 120.07292 * 0.49069 * 20 19 18 22 22 C 1.50702 * 119.92202 * 179.76470 * 21 20 19 23 23 C 1.50694 * 109.46994 * 270.01947 * 22 21 20 24 24 O 1.21282 * 120.00260 * 0.02562 * 23 22 21 25 25 N 1.34779 * 119.99969 * 180.02562 * 23 22 21 26 26 C 1.46501 * 119.99927 * 180.02562 * 25 23 22 27 27 C 1.46497 * 119.99765 * 359.97438 * 25 23 22 28 28 C 1.38293 * 120.15264 * 359.78314 * 21 20 19 29 29 C 1.38102 * 120.07486 * 359.96052 * 28 21 20 30 30 H 1.08992 * 109.46887 * 299.99968 * 1 2 3 31 31 H 1.09001 * 109.46667 * 60.00559 * 1 2 3 32 32 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99858 * 180.02562 * 7 6 4 34 34 H 0.97000 * 120.00056 * 264.99777 * 12 2 1 35 35 H 0.97008 * 120.00055 * 355.37767 * 17 15 13 36 36 H 1.07998 * 120.03605 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.96649 * 180.24978 * 20 19 18 38 38 H 1.08995 * 109.47245 * 30.01966 * 22 21 20 39 39 H 1.09000 * 109.47013 * 150.02008 * 22 21 20 40 40 H 1.09000 * 109.47140 * 89.99898 * 26 25 23 41 41 H 1.09009 * 109.46805 * 209.99953 * 26 25 23 42 42 H 1.08993 * 109.47225 * 329.99829 * 26 25 23 43 43 H 1.08997 * 109.47147 * 90.00326 * 27 25 23 44 44 H 1.09002 * 109.47106 * 210.00218 * 27 25 23 45 45 H 1.08999 * 109.47756 * 330.00044 * 27 25 23 46 46 H 1.07997 * 119.95895 * 179.97438 * 28 21 20 47 47 H 1.08000 * 120.03701 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3225 -1.1195 4.0080 9 1 1.3448 -2.1615 4.4124 10 1 3.6309 -1.7565 3.7120 11 1 2.4872 -0.1401 5.1120 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8589 1.1592 -2.4116 15 6 2.6455 -0.7224 -3.5764 16 8 2.9341 -1.9000 -3.5219 17 7 2.7746 -0.0499 -4.7373 18 6 3.3310 -0.6817 -5.8524 19 6 4.1149 0.0410 -6.7431 20 6 4.6673 -0.5876 -7.8416 21 6 4.4326 -1.9327 -8.0611 22 6 5.0328 -2.6141 -9.2639 23 6 4.0782 -2.5152 -10.4256 24 8 3.0153 -1.9469 -10.2905 25 7 4.4055 -3.0582 -11.6150 26 6 3.4776 -2.9615 -12.7445 27 6 5.6896 -3.7441 -11.7784 28 6 3.6482 -2.6539 -7.1796 29 6 3.0970 -2.0327 -6.0762 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7087 1.1613 3.4844 34 1 2.2491 -1.6318 -1.1526 35 1 2.4812 0.8727 -4.7987 36 1 4.2948 1.0925 -6.5748 37 1 5.2801 -0.0273 -8.5323 38 1 5.9736 -2.1292 -9.5244 39 1 5.2166 -3.6634 -9.0330 40 1 3.6852 -2.0521 -13.3085 41 1 3.6037 -3.8283 -13.3935 42 1 2.4537 -2.9323 -12.3722 43 1 5.5711 -4.7999 -11.5348 44 1 6.0258 -3.6448 -12.8105 45 1 6.4274 -3.2980 -11.1115 46 1 3.4666 -3.7041 -7.3542 47 1 2.4841 -2.5964 -5.3884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116729169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:57 Heat of formation + Delta-G solvation = -95.044686 kcal Electronic energy + Delta-G solvation = -29052.663365 eV Core-core repulsion = 24813.862044 eV Total energy + Delta-G solvation = -4238.801321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12659 -41.08004 -40.26366 -39.17077 -37.10171 -36.52134 -36.12803 -34.36594 -32.96914 -31.93621 -31.11806 -29.56022 -28.16748 -27.39254 -26.72065 -25.52852 -24.06253 -23.08819 -22.12018 -21.26477 -20.20482 -20.17239 -18.69803 -18.16359 -17.98808 -17.52968 -17.16842 -17.12391 -17.05397 -16.77374 -16.08675 -16.05708 -15.70585 -15.23226 -14.99768 -14.69331 -14.51312 -14.47711 -14.44298 -14.16282 -13.78333 -13.60888 -13.43995 -13.35162 -13.15128 -13.04602 -12.92441 -12.89675 -12.81465 -12.70970 -12.37179 -12.31594 -12.16171 -12.08506 -11.44248 -11.17247 -10.87219 -10.70012 -10.60863 -10.01291 -9.88199 -9.64289 -9.14168 -8.21026 -6.38536 -0.07106 0.45794 0.56484 1.29671 1.45591 1.46393 1.57183 1.65087 2.05857 2.15958 2.38528 2.70661 2.82411 3.09775 3.44488 3.68755 3.84737 3.87586 4.03559 4.26585 4.38600 4.43468 4.45076 4.49615 4.52820 4.66735 4.67632 4.69336 4.84532 4.86703 4.93543 4.99594 5.00774 5.05779 5.19491 5.25817 5.28128 5.38221 5.43774 5.54440 5.58194 5.60189 5.74423 5.96437 6.01726 6.02670 6.38601 6.50677 6.63196 6.75343 7.03854 7.20552 7.33594 8.85186 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.001665 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.664125 B =16817.666453 C =17159.306296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.267 3.733 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.267 1.267 11 H -0.283 1.283 12 N -0.669 5.669 13 C 0.496 3.504 14 O -0.557 6.557 15 C 0.517 3.483 16 O -0.518 6.518 17 N -0.635 5.635 18 C 0.119 3.881 19 C -0.139 4.139 20 C -0.089 4.089 21 C -0.085 4.085 22 C -0.090 4.090 23 C 0.505 3.495 24 O -0.583 6.583 25 N -0.625 5.625 26 C 0.081 3.919 27 C 0.068 3.932 28 C -0.095 4.095 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.039 0.961 33 H 0.268 0.732 34 H 0.410 0.590 35 H 0.429 0.571 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.137 0.863 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.660 -9.573 -31.188 34.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.798 3.202 9 H -0.197 1.197 10 H -0.191 1.191 11 H -0.208 1.208 12 N -0.318 5.318 13 C 0.276 3.724 14 O -0.437 6.437 15 C 0.299 3.701 16 O -0.393 6.393 17 N -0.282 5.282 18 C 0.025 3.975 19 C -0.159 4.159 20 C -0.107 4.107 21 C -0.086 4.086 22 C -0.129 4.129 23 C 0.294 3.706 24 O -0.463 6.463 25 N -0.359 5.359 26 C -0.062 4.062 27 C -0.074 4.074 28 C -0.114 4.114 29 C -0.158 4.158 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.268 0.732 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.155 0.845 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.012 -9.158 -30.914 34.407 hybrid contribution -0.360 -0.027 1.076 1.135 sum 11.652 -9.185 -29.838 33.323 Atomic orbital electron populations 1.21929 0.97413 0.99815 1.00325 1.18657 0.91747 0.92470 0.80702 0.96606 1.21478 1.33127 1.13792 0.90695 0.91148 1.25739 0.94728 0.95534 1.02089 1.70022 1.36555 1.23585 1.24859 0.85323 0.78884 0.78088 0.77922 1.19666 1.19144 1.20828 1.46260 1.61771 1.14807 1.08998 1.20107 0.80191 0.87010 0.85096 1.90708 1.51459 1.16315 1.85230 1.20233 0.78567 0.86789 0.84518 1.90715 1.48056 1.15455 1.85075 1.43070 1.59443 1.17575 1.08133 1.18013 0.97743 0.93415 0.88287 1.21155 0.97611 1.01302 0.95823 1.21098 0.99166 0.93939 0.96510 1.19621 0.98702 0.94323 0.95941 1.20735 0.98662 1.04560 0.88963 1.21131 0.87313 0.77603 0.84513 1.90733 1.26815 1.44644 1.84075 1.47960 1.20833 1.56358 1.10704 1.21699 0.93324 1.02836 0.88306 1.22149 0.82978 0.97539 1.04726 1.21056 0.96451 1.00651 0.93237 1.21266 1.01699 0.94108 0.98728 0.90703 0.96159 0.94139 0.92288 0.75391 0.73204 0.83521 0.82949 0.84620 0.85471 0.92434 0.88557 0.93059 0.91206 0.89269 0.88958 0.84518 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 9.26 71.98 0.67 -6.17 16 2 C 0.27 13.85 2.56 44.25 0.11 13.97 16 3 H 0.02 0.95 7.58 -2.39 -0.02 0.93 16 4 C -0.55 -29.56 8.73 25.60 0.22 -29.34 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.39 11.32 21.45 0.24 -51.15 16 8 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.67 -29.60 5.06 -447.52 -2.27 -31.87 16 13 C 0.50 20.69 7.85 87.24 0.68 21.37 16 14 O -0.56 -25.62 16.14 -3.25 -0.05 -25.67 16 15 C 0.52 18.43 7.73 87.24 0.67 19.10 16 16 O -0.52 -19.48 13.91 -3.32 -0.05 -19.53 16 17 N -0.64 -18.89 5.32 -304.84 -1.62 -20.51 16 18 C 0.12 3.28 6.30 38.22 0.24 3.52 16 19 C -0.14 -3.04 9.97 22.40 0.22 -2.82 16 20 C -0.09 -1.64 9.69 22.25 0.22 -1.42 16 21 C -0.08 -1.58 4.38 -19.84 -0.09 -1.67 16 22 C -0.09 -0.95 4.38 29.10 0.13 -0.82 16 23 C 0.51 8.41 7.67 87.65 0.67 9.08 16 24 O -0.58 -15.98 15.61 -3.04 -0.05 -16.03 16 25 N -0.63 -6.54 3.27 -871.90 -2.85 -9.39 16 26 C 0.08 0.81 10.44 127.77 1.33 2.15 16 27 C 0.07 0.09 10.24 127.77 1.31 1.40 16 28 C -0.10 -2.17 9.69 22.25 0.22 -1.96 16 29 C -0.14 -3.92 8.69 22.40 0.19 -3.73 16 30 H 0.07 4.07 6.07 -2.39 -0.01 4.05 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.41 16.78 8.01 -92.71 -0.74 16.03 16 35 H 0.43 11.42 8.30 -92.70 -0.77 10.65 16 36 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.14 0.54 7.34 -2.39 -0.02 0.52 16 39 H 0.13 0.74 8.05 -2.39 -0.02 0.72 16 40 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.40 8.07 -2.38 -0.02 0.39 16 42 H 0.05 0.79 7.42 -2.39 -0.02 0.78 16 43 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.09 -0.12 8.07 -2.39 -0.02 -0.14 16 45 H 0.09 -0.16 6.44 -2.39 -0.02 -0.18 16 46 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 47 H 0.12 3.85 6.22 -2.91 -0.02 3.83 16 Total: -1.00 -75.69 398.74 2.15 -73.54 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.49 Total: 32.31 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 7.26 Total: 24.17 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -6.50 Total: -112.92 kcal Atomic # 8 Polarization: -61.08 SS G_CDS: -0.15 Total: -61.23 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -75.69 2.15 -73.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116729169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.504 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds