Wall clock time and date at job start Wed Apr 1 2020 04:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47158 * 2 1 4 4 C 1.53001 * 109.47702 * 239.99647 * 2 1 3 5 5 C 1.52995 * 109.47285 * 175.00049 * 4 2 1 6 6 H 1.08999 * 109.47294 * 304.99976 * 5 4 2 7 7 C 1.52998 * 109.47337 * 184.99833 * 5 4 2 8 8 N 1.46499 * 109.47290 * 64.99571 * 5 4 2 9 9 C 1.34777 * 120.00195 * 204.99666 * 8 5 4 10 10 O 1.21583 * 119.99947 * 0.02562 * 9 8 5 11 11 C 1.47586 * 119.99875 * 180.27881 * 9 8 5 12 12 C 1.39677 * 120.20900 * 359.45101 * 11 9 8 13 13 C 1.37933 * 120.14512 * 179.65726 * 12 11 9 14 14 C 1.38405 * 120.38498 * 0.66331 * 13 12 11 15 15 C 1.38544 * 120.15921 * 359.63585 * 14 13 12 16 16 C 1.39425 * 120.12371 * 0.02562 * 15 14 13 17 17 O 1.35306 * 107.35416 * 180.02562 * 16 15 14 18 18 C 1.34258 * 109.21158 * 359.97438 * 17 16 15 19 19 O 1.21595 * 125.29496 * 180.02562 * 18 17 16 20 20 N 1.34792 * 109.41658 * 0.02562 * 18 17 16 21 21 C 1.46500 * 126.26933 * 180.02562 * 20 18 17 22 22 N 1.46506 * 109.47197 * 119.99285 * 2 1 3 23 23 C 1.36939 * 119.99723 * 275.00459 * 22 2 1 24 24 H 1.07995 * 120.00490 * 359.97438 * 23 22 2 25 25 C 1.38810 * 119.99677 * 179.97438 * 23 22 2 26 26 N 1.31626 * 120.00034 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00275 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46711 * 0.02562 * 27 25 23 29 29 H 1.48494 * 109.47370 * 120.00237 * 27 25 23 30 30 H 1.48501 * 109.47286 * 240.00571 * 27 25 23 31 31 H 1.08992 * 109.47587 * 300.00883 * 1 2 3 32 32 H 1.09005 * 109.46937 * 60.00789 * 1 2 3 33 33 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47026 * 54.99891 * 4 2 1 35 35 H 1.09000 * 109.46786 * 295.00153 * 4 2 1 36 36 H 1.09007 * 109.46732 * 59.99745 * 7 5 4 37 37 H 1.08995 * 109.47315 * 180.02562 * 7 5 4 38 38 H 1.08999 * 109.47045 * 300.00296 * 7 5 4 39 39 H 0.97000 * 120.00069 * 25.00394 * 8 5 4 40 40 H 1.08000 * 119.92662 * 359.97438 * 12 11 9 41 41 H 1.07998 * 119.80848 * 180.34008 * 13 12 11 42 42 H 1.08002 * 119.91895 * 179.65178 * 14 13 12 43 43 H 1.09000 * 109.47482 * 269.95291 * 21 20 18 44 44 H 1.08999 * 109.47273 * 29.95718 * 21 20 18 45 45 H 1.09006 * 109.46479 * 149.95617 * 21 20 18 46 46 H 0.97000 * 119.99818 * 95.00020 * 22 2 1 47 47 H 0.97000 * 119.99656 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 1 3.8571 0.4358 -1.2677 7 6 4.0647 -1.2251 -2.6237 8 7 4.1537 -1.3340 -0.1821 9 6 5.3748 -0.9909 0.2736 10 8 5.9875 -0.0828 -0.2539 11 6 5.9705 -1.7210 1.4095 12 6 5.2679 -2.7608 2.0227 13 6 5.8288 -3.4470 3.0796 14 6 7.0843 -3.1034 3.5500 15 6 7.7913 -2.0703 2.9564 16 6 7.2405 -1.3720 1.8826 17 8 8.1393 -0.4322 1.5088 18 6 9.2204 -0.5151 2.3005 19 8 10.2056 0.1932 2.2208 20 7 9.0440 -1.5055 3.1976 21 6 9.9933 -1.9134 4.2362 22 7 2.0183 -0.6905 1.1963 23 6 2.1490 -0.0072 2.3758 24 1 1.8925 1.0408 2.4241 25 6 2.6112 -0.6615 3.5094 26 7 2.9244 -1.9386 3.4504 27 14 2.7902 0.2706 5.1182 28 1 2.3762 1.6830 4.9206 29 1 1.9292 -0.3571 6.1525 30 1 4.2071 0.2270 5.5607 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6055 -0.2619 -2.1369 35 1 1.7517 -1.7716 -1.2054 36 1 3.6265 -0.6888 -3.4655 37 1 5.1510 -1.1486 -2.6694 38 1 3.7725 -2.2742 -2.6696 39 1 3.6648 -2.0583 0.2390 40 1 4.2854 -3.0315 1.6653 41 1 5.2830 -4.2537 3.5463 42 1 7.5140 -3.6420 4.3817 43 1 10.6560 -2.6831 3.8408 44 1 10.5830 -1.0514 4.5482 45 1 9.4470 -2.3091 5.0925 46 1 2.2490 -1.6316 1.1528 47 1 3.2477 -2.3957 4.2425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134587920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:29 Heat of formation + Delta-G solvation = -29.787125 kcal Electronic energy + Delta-G solvation = -32378.971283 eV Core-core repulsion = 28142.999742 eV Total energy + Delta-G solvation = -4235.971541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.99933 -39.53211 -38.05760 -37.16411 -36.76934 -35.59399 -34.20892 -32.41629 -31.28252 -29.92089 -29.58731 -28.54894 -27.66557 -26.36369 -23.91253 -23.75498 -22.82126 -22.11883 -20.92150 -20.31983 -19.69777 -18.36210 -17.66958 -17.26124 -17.25057 -16.57734 -15.86119 -15.62077 -14.95591 -14.85215 -14.49628 -14.34546 -14.09127 -13.95329 -13.80546 -13.65001 -13.44301 -13.12524 -12.84589 -12.66242 -12.60962 -12.17096 -12.01863 -11.87974 -11.85097 -11.73148 -11.68511 -11.53374 -11.06787 -10.90199 -10.80289 -10.71884 -10.40123 -10.35465 -10.28228 -9.95603 -9.76392 -9.29264 -9.04448 -8.56727 -8.32563 -7.88724 -7.00891 -5.92524 -3.12839 0.99819 1.51405 2.26458 2.62467 3.07203 3.33183 3.36489 3.43928 3.46446 3.69291 4.19569 4.51212 4.54760 4.62889 5.05205 5.07180 5.12288 5.28972 5.35105 5.38519 5.39536 5.43492 5.50029 5.51059 5.61485 5.66853 5.84022 5.90318 5.95964 5.98803 6.09409 6.12326 6.20727 6.32680 6.35324 6.42896 6.51143 6.53735 6.56752 6.70970 6.81266 6.86795 7.00703 7.14029 7.42825 7.63070 7.81323 8.14310 8.29312 8.86946 9.41267 9.92925 10.29366 11.30322 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.004829 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.286982 B = 5796.836868 C = 7334.698468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.167 3.833 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.084 0.916 7 C -0.163 4.163 8 N -0.692 5.692 9 C 0.568 3.432 10 O -0.546 6.546 11 C -0.100 4.100 12 C -0.005 4.005 13 C -0.100 4.100 14 C -0.083 4.083 15 C 0.035 3.965 16 C 0.091 3.909 17 O -0.214 6.214 18 C 0.628 3.372 19 O -0.501 6.501 20 N -0.550 5.550 21 C 0.104 3.896 22 N -0.715 5.715 23 C -0.216 4.216 24 H 0.068 0.932 25 C -0.011 4.011 26 N -0.927 5.927 27 Si 0.898 3.102 28 H -0.284 1.284 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.403 0.597 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.129 0.871 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.376 0.624 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -8.118 -3.320 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.102 0.898 7 C -0.221 4.221 8 N -0.345 5.345 9 C 0.355 3.645 10 O -0.425 6.425 11 C -0.104 4.104 12 C -0.025 4.025 13 C -0.119 4.119 14 C -0.104 4.104 15 C -0.061 4.061 16 C 0.043 3.957 17 O -0.117 6.117 18 C 0.384 3.616 19 O -0.385 6.385 20 N -0.284 5.284 21 C -0.036 4.036 22 N -0.358 5.358 23 C -0.347 4.347 24 H 0.086 0.914 25 C -0.206 4.206 26 N -0.576 5.576 27 Si 0.731 3.269 28 H -0.209 1.209 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.241 0.759 40 H 0.173 0.827 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.211 0.789 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.033 -6.726 -3.768 9.207 hybrid contribution -0.095 0.010 1.593 1.596 sum 4.938 -6.716 -2.175 8.615 Atomic orbital electron populations 1.22402 0.99153 1.00738 0.99991 1.20316 0.91722 0.95852 0.86320 0.93291 1.22212 0.93939 1.01621 0.99421 1.20822 0.92435 0.97421 0.84802 0.89768 1.22209 1.01918 1.00792 0.97183 1.45834 1.17458 1.37574 1.33631 1.17784 0.81531 0.82923 0.82215 1.90771 1.62053 1.30448 1.59230 1.18960 0.90782 1.00348 1.00360 1.21264 0.97390 0.90752 0.93138 1.20854 0.93414 1.00956 0.96684 1.20141 0.94881 0.95337 1.00021 1.18299 0.87445 1.00553 0.99827 1.18745 0.91708 0.89987 0.95288 1.85114 1.25262 1.49847 1.51512 1.18688 0.83013 0.81232 0.78697 1.91094 1.27092 1.47689 1.72667 1.45608 1.16688 1.33045 1.33047 1.21710 0.91446 1.01729 0.88704 1.42474 1.77738 1.10079 1.05482 1.19297 1.34445 0.93828 0.87111 0.91413 1.24463 1.02554 0.96079 0.97463 1.69498 1.51351 1.08270 1.28514 0.86226 0.77220 0.79057 0.84439 1.20904 1.22072 1.22072 0.92874 0.94534 0.93570 0.90691 0.91679 0.92084 0.92309 0.92762 0.75861 0.82673 0.84136 0.85282 0.91115 0.89452 0.89678 0.78867 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.49 37.16 0.35 -2.26 16 2 C 0.17 2.92 2.89 -67.93 -0.20 2.73 16 3 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 4 C -0.13 -1.86 4.43 -26.73 -0.12 -1.98 16 5 C 0.15 2.33 2.57 -67.93 -0.17 2.16 16 6 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 7 C -0.16 -2.13 9.48 37.16 0.35 -1.77 16 8 N -0.69 -11.92 3.75 -54.84 -0.21 -12.12 16 9 C 0.57 11.53 7.73 -12.45 -0.10 11.43 16 10 O -0.55 -12.81 15.74 -6.04 -0.10 -12.90 16 11 C -0.10 -1.90 5.88 -104.90 -0.62 -2.52 16 12 C 0.00 -0.08 7.86 -39.16 -0.31 -0.39 16 13 C -0.10 -1.41 10.02 -39.63 -0.40 -1.81 16 14 C -0.08 -1.11 10.02 -39.41 -0.39 -1.51 16 15 C 0.04 0.58 6.84 -83.81 -0.57 0.00 16 16 C 0.09 1.77 6.94 -38.50 -0.27 1.51 16 17 O -0.21 -4.56 10.03 -26.05 -0.26 -4.82 16 18 C 0.63 12.11 9.07 54.06 0.49 12.60 16 19 O -0.50 -10.46 17.81 -19.00 -0.34 -10.79 16 20 N -0.55 -8.55 3.21 -126.44 -0.41 -8.95 16 21 C 0.10 1.07 11.07 59.85 0.66 1.73 16 22 N -0.72 -14.85 3.84 -53.42 -0.21 -15.05 16 23 C -0.22 -5.28 9.93 -15.06 -0.15 -5.43 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -21.67 10.71 55.49 0.59 -21.08 16 27 Si 0.90 21.17 29.55 -169.99 -5.02 16.15 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.40 6.63 4.54 -40.82 -0.19 6.44 16 40 H 0.16 2.54 5.80 -52.49 -0.30 2.24 16 41 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.38 7.76 5.70 -40.82 -0.23 7.52 16 47 H 0.25 5.89 8.31 -40.82 -0.34 5.55 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -30.75 389.14 -8.18 -38.93 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.57 Total: 10.65 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -1.53 Total: 14.12 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.22 Total: -57.20 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.69 Total: -28.51 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.75 -8.18 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134587920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.144 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds