Wall clock time and date at job start Wed Apr 1 2020 04:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47158 * 2 1 4 4 C 1.53001 * 109.47702 * 239.99647 * 2 1 3 5 5 C 1.52995 * 109.47285 * 175.00049 * 4 2 1 6 6 H 1.08999 * 109.47294 * 304.99976 * 5 4 2 7 7 C 1.52998 * 109.47337 * 184.99833 * 5 4 2 8 8 N 1.46499 * 109.47290 * 64.99571 * 5 4 2 9 9 C 1.34777 * 120.00195 * 204.99666 * 8 5 4 10 10 O 1.21583 * 119.99947 * 0.02562 * 9 8 5 11 11 C 1.47586 * 119.99875 * 180.27881 * 9 8 5 12 12 C 1.39677 * 120.20900 * 359.45101 * 11 9 8 13 13 C 1.37933 * 120.14512 * 179.65726 * 12 11 9 14 14 C 1.38405 * 120.38498 * 0.66331 * 13 12 11 15 15 C 1.38544 * 120.15921 * 359.63585 * 14 13 12 16 16 C 1.39425 * 120.12371 * 0.02562 * 15 14 13 17 17 O 1.35306 * 107.35416 * 180.02562 * 16 15 14 18 18 C 1.34258 * 109.21158 * 359.97438 * 17 16 15 19 19 O 1.21595 * 125.29496 * 180.02562 * 18 17 16 20 20 N 1.34792 * 109.41658 * 0.02562 * 18 17 16 21 21 C 1.46500 * 126.26933 * 180.02562 * 20 18 17 22 22 N 1.46506 * 109.47197 * 119.99285 * 2 1 3 23 23 C 1.36939 * 119.99723 * 275.00459 * 22 2 1 24 24 H 1.07995 * 120.00490 * 359.97438 * 23 22 2 25 25 C 1.38810 * 119.99677 * 179.97438 * 23 22 2 26 26 N 1.31626 * 120.00034 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00275 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46711 * 0.02562 * 27 25 23 29 29 H 1.48494 * 109.47370 * 120.00237 * 27 25 23 30 30 H 1.48501 * 109.47286 * 240.00571 * 27 25 23 31 31 H 1.08992 * 109.47587 * 300.00883 * 1 2 3 32 32 H 1.09005 * 109.46937 * 60.00789 * 1 2 3 33 33 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47026 * 54.99891 * 4 2 1 35 35 H 1.09000 * 109.46786 * 295.00153 * 4 2 1 36 36 H 1.09007 * 109.46732 * 59.99745 * 7 5 4 37 37 H 1.08995 * 109.47315 * 180.02562 * 7 5 4 38 38 H 1.08999 * 109.47045 * 300.00296 * 7 5 4 39 39 H 0.97000 * 120.00069 * 25.00394 * 8 5 4 40 40 H 1.08000 * 119.92662 * 359.97438 * 12 11 9 41 41 H 1.07998 * 119.80848 * 180.34008 * 13 12 11 42 42 H 1.08002 * 119.91895 * 179.65178 * 14 13 12 43 43 H 1.09000 * 109.47482 * 269.95291 * 21 20 18 44 44 H 1.08999 * 109.47273 * 29.95718 * 21 20 18 45 45 H 1.09006 * 109.46479 * 149.95617 * 21 20 18 46 46 H 0.97000 * 119.99818 * 95.00020 * 22 2 1 47 47 H 0.97000 * 119.99656 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 1 3.8571 0.4358 -1.2677 7 6 4.0647 -1.2251 -2.6237 8 7 4.1537 -1.3340 -0.1821 9 6 5.3748 -0.9909 0.2736 10 8 5.9875 -0.0828 -0.2539 11 6 5.9705 -1.7210 1.4095 12 6 5.2679 -2.7608 2.0227 13 6 5.8288 -3.4470 3.0796 14 6 7.0843 -3.1034 3.5500 15 6 7.7913 -2.0703 2.9564 16 6 7.2405 -1.3720 1.8826 17 8 8.1393 -0.4322 1.5088 18 6 9.2204 -0.5151 2.3005 19 8 10.2056 0.1932 2.2208 20 7 9.0440 -1.5055 3.1976 21 6 9.9933 -1.9134 4.2362 22 7 2.0183 -0.6905 1.1963 23 6 2.1490 -0.0072 2.3758 24 1 1.8925 1.0408 2.4241 25 6 2.6112 -0.6615 3.5094 26 7 2.9244 -1.9386 3.4504 27 14 2.7902 0.2706 5.1182 28 1 2.3762 1.6830 4.9206 29 1 1.9292 -0.3571 6.1525 30 1 4.2071 0.2270 5.5607 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6055 -0.2619 -2.1369 35 1 1.7517 -1.7716 -1.2054 36 1 3.6265 -0.6888 -3.4655 37 1 5.1510 -1.1486 -2.6694 38 1 3.7725 -2.2742 -2.6696 39 1 3.6648 -2.0583 0.2390 40 1 4.2854 -3.0315 1.6653 41 1 5.2830 -4.2537 3.5463 42 1 7.5140 -3.6420 4.3817 43 1 10.6560 -2.6831 3.8408 44 1 10.5830 -1.0514 4.5482 45 1 9.4470 -2.3091 5.0925 46 1 2.2490 -1.6316 1.1528 47 1 3.2477 -2.3957 4.2425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134587920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:28 Heat of formation + Delta-G solvation = -47.934736 kcal Electronic energy + Delta-G solvation = -32379.758222 eV Core-core repulsion = 28142.999742 eV Total energy + Delta-G solvation = -4236.758481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.37462 -40.99144 -39.45684 -38.54859 -38.25018 -36.89123 -35.75866 -34.03366 -32.68981 -31.27006 -30.81855 -30.05409 -28.75635 -27.57316 -25.51589 -25.26457 -24.12345 -23.47223 -22.20586 -21.72639 -21.11220 -19.68902 -19.07105 -18.95485 -18.65543 -18.02481 -17.28319 -16.88527 -16.62121 -16.14662 -15.97727 -15.70835 -15.48973 -15.34080 -15.14375 -14.97331 -14.89925 -14.47582 -14.27291 -14.11294 -13.56059 -13.47858 -13.30195 -13.26924 -13.09014 -13.04802 -12.87556 -12.77094 -12.75406 -12.58532 -12.26790 -12.15848 -12.10413 -11.68740 -11.60147 -11.54178 -11.38069 -10.85581 -10.81021 -9.98022 -9.67369 -9.18797 -8.70567 -7.79075 -4.96815 -0.30498 0.21868 1.02374 1.17892 1.45018 1.50338 1.54758 1.75505 1.94287 2.33038 2.63892 2.82711 3.30332 3.53575 3.55416 3.80783 3.91050 4.00146 4.08447 4.20375 4.26176 4.28177 4.40410 4.42055 4.43642 4.60000 4.66084 4.70046 4.74960 4.86127 4.90272 4.91151 4.95449 5.10006 5.14945 5.18274 5.21035 5.30994 5.38702 5.45563 5.47959 5.62723 5.66132 5.69067 5.77678 6.08449 6.43596 6.47858 6.70386 7.38502 7.55955 8.21757 8.53581 9.42797 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.004829 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.286982 B = 5796.836868 C = 7334.698468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.022 0.978 4 C -0.118 4.118 5 C 0.144 3.856 6 H 0.050 0.950 7 C -0.152 4.152 8 N -0.679 5.679 9 C 0.557 3.443 10 O -0.593 6.593 11 C -0.125 4.125 12 C -0.005 4.005 13 C -0.093 4.093 14 C -0.059 4.059 15 C 0.038 3.962 16 C 0.048 3.952 17 O -0.249 6.249 18 C 0.615 3.385 19 O -0.532 6.532 20 N -0.535 5.535 21 C 0.091 3.909 22 N -0.716 5.716 23 C -0.230 4.230 24 H 0.045 0.955 25 C -0.034 4.034 26 N -0.918 5.918 27 Si 0.928 3.072 28 H -0.298 1.298 29 H -0.290 1.290 30 H -0.304 1.304 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.408 0.592 40 H 0.156 0.844 41 H 0.176 0.824 42 H 0.181 0.819 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.378 0.622 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -11.378 -2.600 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.040 0.960 4 C -0.156 4.156 5 C 0.040 3.960 6 H 0.069 0.931 7 C -0.210 4.210 8 N -0.331 5.331 9 C 0.345 3.655 10 O -0.476 6.476 11 C -0.129 4.129 12 C -0.025 4.025 13 C -0.112 4.112 14 C -0.080 4.080 15 C -0.059 4.059 16 C 0.000 4.000 17 O -0.153 6.153 18 C 0.371 3.629 19 O -0.419 6.419 20 N -0.268 5.268 21 C -0.046 4.046 22 N -0.359 5.359 23 C -0.363 4.363 24 H 0.063 0.937 25 C -0.230 4.230 26 N -0.568 5.568 27 Si 0.762 3.238 28 H -0.224 1.224 29 H -0.218 1.218 30 H -0.232 1.232 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.247 0.753 40 H 0.173 0.827 41 H 0.194 0.806 42 H 0.198 0.802 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.137 0.863 46 H 0.213 0.787 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.192 -10.046 -3.043 11.303 hybrid contribution 0.164 0.996 1.393 1.720 sum 4.356 -9.050 -1.651 10.179 Atomic orbital electron populations 1.22249 0.97490 1.01233 1.00227 1.20480 0.92824 0.94725 0.86749 0.95994 1.22126 0.92226 1.02547 0.98719 1.20980 0.93729 0.95749 0.85555 0.93142 1.22108 1.00350 1.02230 0.96309 1.45840 1.16456 1.37183 1.33641 1.18211 0.82125 0.82588 0.82530 1.90730 1.63380 1.32604 1.60889 1.19098 0.91366 1.01624 1.00833 1.21376 0.97266 0.90141 0.93674 1.21316 0.93655 1.00893 0.95307 1.20702 0.93899 0.93442 0.99947 1.18609 0.87529 1.00759 0.98959 1.19191 0.92286 0.91048 0.97436 1.85021 1.26358 1.51114 1.52804 1.18898 0.82513 0.82163 0.79359 1.91041 1.28030 1.49124 1.73720 1.45796 1.16993 1.31378 1.32617 1.22220 0.91423 1.02554 0.88444 1.42417 1.78122 1.09974 1.05413 1.19205 1.35116 0.93153 0.88810 0.93736 1.24717 1.03249 0.96908 0.98094 1.69497 1.51241 1.07509 1.28536 0.85797 0.76256 0.77995 0.83798 1.22411 1.21758 1.23210 0.95388 0.91576 0.92820 0.87413 0.89731 0.89573 0.94774 0.90629 0.75274 0.82701 0.80633 0.80207 0.88608 0.89530 0.86334 0.78717 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.49 71.98 0.68 -3.97 16 2 C 0.16 5.54 2.89 44.99 0.13 5.67 16 3 H 0.02 0.87 8.08 -2.38 -0.02 0.85 16 4 C -0.12 -3.05 4.43 30.59 0.14 -2.92 16 5 C 0.14 4.48 2.57 44.99 0.12 4.59 16 6 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 7 C -0.15 -3.80 9.48 71.98 0.68 -3.11 16 8 N -0.68 -23.77 3.75 -445.67 -1.67 -25.45 16 9 C 0.56 23.72 7.73 86.71 0.67 24.39 16 10 O -0.59 -29.93 15.74 6.85 0.11 -29.82 16 11 C -0.12 -4.86 5.88 -20.05 -0.12 -4.97 16 12 C 0.00 -0.14 7.86 22.55 0.18 0.03 16 13 C -0.09 -2.28 10.02 22.24 0.22 -2.05 16 14 C -0.06 -1.35 10.02 22.38 0.22 -1.12 16 15 C 0.04 1.19 6.84 38.28 0.26 1.45 16 16 C 0.05 1.92 6.94 22.97 0.16 2.08 16 17 O -0.25 -11.27 10.03 15.50 0.16 -11.12 16 18 C 0.61 24.57 9.07 129.79 1.18 25.75 16 19 O -0.53 -23.19 17.81 19.20 0.34 -22.85 16 20 N -0.54 -15.99 3.21 -784.49 -2.52 -18.51 16 21 C 0.09 1.59 11.07 127.77 1.41 3.01 16 22 N -0.72 -29.73 3.84 -322.93 -1.24 -30.97 16 23 C -0.23 -11.49 9.93 84.03 0.83 -10.65 16 24 H 0.04 2.38 7.83 -2.91 -0.02 2.36 16 25 C -0.03 -1.69 5.50 84.86 0.47 -1.22 16 26 N -0.92 -41.57 10.71 21.65 0.23 -41.34 16 27 Si 0.93 43.39 29.55 68.60 2.03 45.42 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 30 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.41 13.24 4.54 -92.71 -0.42 12.82 16 40 H 0.16 4.84 5.80 -2.91 -0.02 4.83 16 41 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 42 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 45 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.38 15.25 5.70 -92.71 -0.53 14.72 16 47 H 0.26 11.25 8.31 -92.71 -0.77 10.48 16 Total: -1.00 -73.01 389.14 4.74 -68.27 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.06 Total: 29.42 kcal Atomic # 6 Polarization: 29.70 SS G_CDS: 7.24 Total: 36.94 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -5.20 Total: -116.27 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: 0.61 Total: -63.78 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.01 4.74 -68.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134587920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.336 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds