Wall clock time and date at job start Wed Apr 1 2020 04:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21596 * 119.99664 * 0.02562 * 9 8 5 11 11 C 1.47603 * 120.00404 * 180.02562 * 9 8 5 12 12 C 1.39723 * 120.02848 * 0.02562 * 11 9 8 13 13 C 1.37801 * 120.05536 * 179.97438 * 12 11 9 14 14 C 1.38817 * 120.02407 * 0.02562 * 13 12 11 15 15 C 1.39670 * 120.20136 * 0.02562 * 14 13 12 16 16 C 1.37984 * 120.01086 * 359.66845 * 15 14 13 17 17 O 1.36031 * 119.44724 * 179.86436 * 15 14 13 18 18 C 1.43010 * 116.66736 * 327.26572 * 17 15 14 19 19 C 1.50753 * 109.59249 * 46.34547 * 18 17 15 20 20 O 1.21285 * 120.10826 * 148.69497 * 19 18 17 21 21 N 1.35047 * 119.76982 * 328.67734 * 19 18 17 22 22 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 23 23 C 1.36931 * 119.99788 * 84.99932 * 22 2 1 24 24 H 1.08002 * 120.00438 * 0.02562 * 23 22 2 25 25 C 1.38817 * 119.99680 * 179.72358 * 23 22 2 26 26 N 1.31617 * 119.99873 * 180.27450 * 25 23 22 27 27 Si 1.86800 * 120.00209 * 0.27770 * 25 23 22 28 28 H 1.48498 * 109.47118 * 89.99559 * 27 25 23 29 29 H 1.48499 * 109.47134 * 210.00079 * 27 25 23 30 30 H 1.48507 * 109.46904 * 329.99901 * 27 25 23 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 33 33 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 34 34 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 35 35 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 36 36 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 37 37 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 38 38 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 39 39 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 40 40 H 1.08002 * 119.97088 * 359.96921 * 12 11 9 41 41 H 1.08005 * 119.98991 * 180.02562 * 13 12 11 42 42 H 1.07997 * 120.11539 * 180.32499 * 16 15 14 43 43 H 1.08995 * 109.44945 * 166.38990 * 18 17 15 44 44 H 1.09003 * 109.44624 * 286.33663 * 18 17 15 45 45 H 0.97000 * 120.46093 * 181.64269 * 21 19 18 46 46 H 0.97000 * 119.99792 * 264.99726 * 22 2 1 47 47 H 0.97000 * 120.00553 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9376 0.4321 0.5720 11 6 5.5474 2.6267 1.2672 12 6 4.6559 3.5251 1.8591 13 6 5.0161 4.8444 2.0283 14 6 6.2652 5.2825 1.6104 15 6 7.1606 4.3897 1.0171 16 6 6.8074 3.0662 0.8509 17 8 8.3796 4.8361 0.6107 18 6 8.4451 6.1851 0.1405 19 6 7.7077 7.0895 1.0949 20 8 8.0694 8.2369 1.2482 21 7 6.6427 6.6176 1.7783 22 7 2.0183 -0.6907 -1.1962 23 6 2.1491 -0.0075 -2.3757 24 1 1.8926 1.0405 -2.4242 25 6 2.6172 -0.6605 -3.5077 26 7 2.7480 -0.0026 -4.6401 27 14 3.0615 -2.4730 -3.4239 28 1 1.8659 -3.2913 -3.7497 29 1 4.1416 -2.7636 -4.4007 30 1 3.5302 -2.8049 -2.0543 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 2.1370 35 1 1.7517 -1.7715 1.2056 36 1 5.1715 -1.3617 2.5381 37 1 3.6546 -1.0593 3.4193 38 1 3.8002 -2.4819 2.3595 39 1 3.3284 1.4129 1.9028 40 1 3.6836 3.1853 2.1841 41 1 4.3262 5.5379 2.4863 42 1 7.5004 2.3733 0.3972 43 1 9.4876 6.4971 0.0769 44 1 7.9865 6.2481 -0.8463 45 1 6.1464 7.1974 2.3770 46 1 2.2490 -1.6318 -1.1526 47 1 3.0748 -0.4589 -5.4313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134608281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:59 Heat of formation + Delta-G solvation = -64.962752 kcal Electronic energy + Delta-G solvation = -30557.682813 eV Core-core repulsion = 26320.185942 eV Total energy + Delta-G solvation = -4237.496871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82114 -40.02427 -38.95690 -37.71792 -36.93195 -35.44630 -34.63636 -32.25899 -31.38154 -30.93341 -29.86825 -29.21237 -28.09561 -26.44581 -24.57019 -23.71419 -23.27594 -21.65011 -20.91080 -20.08091 -19.79522 -19.28102 -18.24116 -17.80756 -17.45907 -16.93403 -16.38623 -15.92521 -15.59515 -15.01850 -14.95880 -14.76269 -14.64527 -14.32660 -14.23640 -13.97526 -13.64198 -13.61945 -13.24998 -13.07748 -12.82389 -12.63636 -12.41446 -12.15505 -11.99543 -11.77318 -11.73824 -11.64221 -11.28148 -11.07537 -10.92461 -10.67922 -10.51045 -10.50180 -10.28215 -9.96473 -9.77510 -9.54714 -9.07442 -8.89622 -8.85034 -8.33209 -7.23010 -5.72525 -3.07491 0.37996 0.92242 1.76590 2.30907 2.76223 2.87890 3.36001 3.42160 3.44672 3.50425 3.54475 3.68901 4.19101 4.53606 4.59947 4.64164 4.65759 4.72628 4.91783 4.94114 5.04464 5.22291 5.28124 5.40275 5.51025 5.58000 5.59138 5.70128 5.74530 5.79899 5.85121 5.94060 5.98397 6.08762 6.12202 6.16324 6.24114 6.30691 6.34392 6.40604 6.51638 6.69281 6.79966 6.88488 6.96868 7.30522 7.66607 8.02214 8.40457 8.46201 9.24721 9.97698 10.16574 11.46032 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011865 B = 0.002855 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.334710 B = 9805.031058 C =10619.038773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.710 5.710 9 C 0.561 3.439 10 O -0.527 6.527 11 C -0.114 4.114 12 C -0.073 4.073 13 C -0.130 4.130 14 C 0.112 3.888 15 C 0.068 3.932 16 C -0.045 4.045 17 O -0.298 6.298 18 C 0.049 3.951 19 C 0.493 3.507 20 O -0.511 6.511 21 N -0.658 5.658 22 N -0.745 5.745 23 C -0.238 4.238 24 H 0.087 0.913 25 C 0.006 3.994 26 N -0.935 5.935 27 Si 0.882 3.118 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.276 1.276 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.104 0.896 45 H 0.417 0.583 46 H 0.360 0.640 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 9.326 18.868 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.039 3.961 6 H 0.120 0.880 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.348 3.652 10 O -0.403 6.403 11 C -0.118 4.118 12 C -0.093 4.093 13 C -0.150 4.150 14 C 0.016 3.984 15 C 0.022 3.978 16 C -0.065 4.065 17 O -0.212 6.212 18 C -0.029 4.029 19 C 0.280 3.720 20 O -0.386 6.386 21 N -0.304 5.304 22 N -0.388 5.388 23 C -0.368 4.368 24 H 0.105 0.895 25 C -0.190 4.190 26 N -0.583 5.583 27 Si 0.713 3.287 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.202 1.202 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.229 0.771 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.165 0.835 44 H 0.122 0.878 45 H 0.256 0.744 46 H 0.193 0.807 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.539 9.410 18.256 21.272 hybrid contribution -0.513 -0.482 0.295 0.763 sum 5.026 8.928 18.551 21.192 Atomic orbital electron populations 1.22427 0.98996 1.00863 1.00313 1.20198 0.91758 0.95818 0.85528 0.92790 1.22232 0.93730 1.02268 0.99165 1.21043 0.95100 0.80134 0.99840 0.88000 1.22195 1.01751 1.00052 0.98046 1.45831 1.16191 1.11655 1.62456 1.17912 0.82225 0.86851 0.78234 1.90817 1.51151 1.55836 1.42534 1.19823 0.94747 0.94403 1.02868 1.21122 0.99106 0.92168 0.96857 1.20516 0.93914 0.96778 1.03818 1.18187 0.95280 0.83689 1.01277 1.18379 0.85385 0.93016 1.01028 1.20597 0.95685 0.93188 0.97016 1.86307 1.26561 1.28267 1.80106 1.23243 1.04166 0.78846 0.96675 1.21629 0.80025 0.88771 0.81599 1.90819 1.65333 1.18450 1.63948 1.43658 1.31422 1.10299 1.45066 1.42773 1.79580 1.09357 1.07128 1.18992 1.36760 0.95444 0.85618 0.89473 1.24639 1.01312 0.97406 0.95644 1.69692 1.52655 1.35514 1.00414 0.86574 0.77953 0.86965 0.77197 1.21330 1.21833 1.20202 0.93619 0.94387 0.92406 0.91513 0.90624 0.92298 0.92862 0.91785 0.77060 0.84456 0.84252 0.82768 0.83469 0.87792 0.74374 0.80740 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.49 37.16 0.35 -2.28 16 2 C 0.18 3.03 2.84 -67.93 -0.19 2.83 16 3 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 4 C -0.14 -1.78 4.29 -26.73 -0.11 -1.90 16 5 C 0.14 2.05 2.52 -67.93 -0.17 1.88 16 6 H 0.10 1.94 7.05 -51.93 -0.37 1.58 16 7 C -0.16 -1.94 9.48 37.16 0.35 -1.59 16 8 N -0.71 -9.21 4.40 -54.82 -0.24 -9.46 16 9 C 0.56 8.62 7.73 -12.44 -0.10 8.52 16 10 O -0.53 -10.36 16.00 5.28 0.08 -10.27 16 11 C -0.11 -1.41 5.88 -104.94 -0.62 -2.03 16 12 C -0.07 -0.65 9.53 -39.19 -0.37 -1.03 16 13 C -0.13 -1.01 9.92 -39.53 -0.39 -1.40 16 14 C 0.11 1.05 6.55 -83.50 -0.55 0.50 16 15 C 0.07 0.76 6.43 -39.14 -0.25 0.51 16 16 C -0.05 -0.57 9.53 -39.10 -0.37 -0.94 16 17 O -0.30 -3.18 10.45 -19.84 -0.21 -3.39 16 18 C 0.05 0.40 7.17 36.03 0.26 0.66 16 19 C 0.49 4.83 7.94 -10.84 -0.09 4.75 16 20 O -0.51 -6.43 17.95 5.55 0.10 -6.33 16 21 N -0.66 -5.51 5.45 -9.65 -0.05 -5.56 16 22 N -0.75 -16.74 4.30 -53.42 -0.23 -16.97 16 23 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 24 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -29.51 13.97 55.49 0.78 -28.74 16 27 Si 0.88 22.43 27.74 -169.99 -4.72 17.72 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 30 H -0.28 -6.61 6.51 56.52 0.37 -6.24 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.39 3.80 6.62 -40.82 -0.27 3.53 16 40 H 0.14 0.87 6.38 -52.49 -0.33 0.53 16 41 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.15 2.07 7.64 -52.49 -0.40 1.67 16 43 H 0.15 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.42 2.60 8.88 -40.82 -0.36 2.23 16 46 H 0.36 8.10 5.66 -40.82 -0.23 7.87 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -36.68 391.82 -7.69 -44.37 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.60 Total: 10.89 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -2.50 Total: 1.83 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.25 Total: -60.72 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.02 Total: -19.99 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.72 Total: 17.72 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.68 -7.69 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134608281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.594 kcal (2) G-P(sol) polarization free energy of solvation -36.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds