Wall clock time and date at job start Wed Apr 1 2020 04:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21596 * 119.99664 * 0.02562 * 9 8 5 11 11 C 1.47603 * 120.00404 * 180.02562 * 9 8 5 12 12 C 1.39723 * 120.02848 * 0.02562 * 11 9 8 13 13 C 1.37801 * 120.05536 * 179.97438 * 12 11 9 14 14 C 1.38817 * 120.02407 * 0.02562 * 13 12 11 15 15 C 1.39670 * 120.20136 * 0.02562 * 14 13 12 16 16 C 1.37984 * 120.01086 * 359.66845 * 15 14 13 17 17 O 1.36031 * 119.44724 * 179.86436 * 15 14 13 18 18 C 1.43010 * 116.66736 * 327.26572 * 17 15 14 19 19 C 1.50753 * 109.59249 * 46.34547 * 18 17 15 20 20 O 1.21285 * 120.10826 * 148.69497 * 19 18 17 21 21 N 1.35047 * 119.76982 * 328.67734 * 19 18 17 22 22 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 23 23 C 1.36931 * 119.99788 * 84.99932 * 22 2 1 24 24 H 1.08002 * 120.00438 * 0.02562 * 23 22 2 25 25 C 1.38817 * 119.99680 * 179.72358 * 23 22 2 26 26 N 1.31617 * 119.99873 * 180.27450 * 25 23 22 27 27 Si 1.86800 * 120.00209 * 0.27770 * 25 23 22 28 28 H 1.48498 * 109.47118 * 89.99559 * 27 25 23 29 29 H 1.48499 * 109.47134 * 210.00079 * 27 25 23 30 30 H 1.48507 * 109.46904 * 329.99901 * 27 25 23 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 33 33 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 34 34 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 35 35 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 36 36 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 37 37 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 38 38 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 39 39 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 40 40 H 1.08002 * 119.97088 * 359.96921 * 12 11 9 41 41 H 1.08005 * 119.98991 * 180.02562 * 13 12 11 42 42 H 1.07997 * 120.11539 * 180.32499 * 16 15 14 43 43 H 1.08995 * 109.44945 * 166.38990 * 18 17 15 44 44 H 1.09003 * 109.44624 * 286.33663 * 18 17 15 45 45 H 0.97000 * 120.46093 * 181.64269 * 21 19 18 46 46 H 0.97000 * 119.99792 * 264.99726 * 22 2 1 47 47 H 0.97000 * 120.00553 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9376 0.4321 0.5720 11 6 5.5474 2.6267 1.2672 12 6 4.6559 3.5251 1.8591 13 6 5.0161 4.8444 2.0283 14 6 6.2652 5.2825 1.6104 15 6 7.1606 4.3897 1.0171 16 6 6.8074 3.0662 0.8509 17 8 8.3796 4.8361 0.6107 18 6 8.4451 6.1851 0.1405 19 6 7.7077 7.0895 1.0949 20 8 8.0694 8.2369 1.2482 21 7 6.6427 6.6176 1.7783 22 7 2.0183 -0.6907 -1.1962 23 6 2.1491 -0.0075 -2.3757 24 1 1.8926 1.0405 -2.4242 25 6 2.6172 -0.6605 -3.5077 26 7 2.7480 -0.0026 -4.6401 27 14 3.0615 -2.4730 -3.4239 28 1 1.8659 -3.2913 -3.7497 29 1 4.1416 -2.7636 -4.4007 30 1 3.5302 -2.8049 -2.0543 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 2.1370 35 1 1.7517 -1.7715 1.2056 36 1 5.1715 -1.3617 2.5381 37 1 3.6546 -1.0593 3.4193 38 1 3.8002 -2.4819 2.3595 39 1 3.3284 1.4129 1.9028 40 1 3.6836 3.1853 2.1841 41 1 4.3262 5.5379 2.4863 42 1 7.5004 2.3733 0.3972 43 1 9.4876 6.4971 0.0769 44 1 7.9865 6.2481 -0.8463 45 1 6.1464 7.1974 2.3770 46 1 2.2490 -1.6318 -1.1526 47 1 3.0748 -0.4589 -5.4313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134608281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:58 Heat of formation + Delta-G solvation = -93.426850 kcal Electronic energy + Delta-G solvation = -30558.917109 eV Core-core repulsion = 26320.185942 eV Total energy + Delta-G solvation = -4238.731167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.60443 -41.09882 -39.85590 -38.64987 -38.18041 -36.29532 -36.12229 -34.08013 -32.59256 -31.76350 -31.11700 -30.56876 -28.84976 -27.56349 -25.51538 -25.24465 -24.50965 -22.64479 -22.01903 -21.34992 -20.83807 -20.17361 -19.63366 -19.02502 -18.51582 -17.77098 -17.40377 -16.93234 -16.63165 -16.39017 -16.04159 -15.94928 -15.72068 -15.49729 -15.16521 -15.11465 -15.00443 -14.61556 -14.48027 -14.24114 -14.04680 -13.97426 -13.57767 -13.39314 -13.22129 -12.96814 -12.77109 -12.60905 -12.59245 -12.38155 -12.35701 -11.99152 -11.92843 -11.82661 -11.64054 -11.40131 -11.30691 -11.00704 -10.92084 -10.02987 -9.84806 -9.23108 -9.13366 -7.98532 -5.27845 -0.47825 0.13633 0.97071 1.35562 1.40471 1.45805 1.59829 1.84357 1.99864 2.39710 2.50720 2.73484 2.81920 3.35008 3.44785 3.69390 3.70435 3.87050 3.94082 3.98074 4.06619 4.11861 4.14387 4.30730 4.39784 4.56710 4.61732 4.70884 4.81879 4.82387 4.86897 4.93355 4.96548 5.05791 5.13323 5.16784 5.25696 5.30761 5.37373 5.41676 5.42907 5.61423 5.64222 5.66322 5.83917 6.10256 6.26593 6.59684 6.63274 7.14892 7.32169 7.94518 8.09042 9.23681 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011865 B = 0.002855 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.334710 B = 9805.031058 C =10619.038773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.121 4.121 5 C 0.140 3.860 6 H 0.048 0.952 7 C -0.153 4.153 8 N -0.696 5.696 9 C 0.553 3.447 10 O -0.585 6.585 11 C -0.134 4.134 12 C -0.061 4.061 13 C -0.113 4.113 14 C 0.117 3.883 15 C 0.057 3.943 16 C -0.067 4.067 17 O -0.313 6.313 18 C 0.045 3.955 19 C 0.493 3.507 20 O -0.541 6.541 21 N -0.647 5.647 22 N -0.750 5.750 23 C -0.209 4.209 24 H 0.056 0.944 25 C -0.069 4.069 26 N -0.988 5.988 27 Si 0.946 3.054 28 H -0.276 1.276 29 H -0.306 1.306 30 H -0.255 1.255 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.024 0.976 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.414 0.586 40 H 0.171 0.829 41 H 0.183 0.817 42 H 0.129 0.871 43 H 0.169 0.831 44 H 0.117 0.883 45 H 0.429 0.571 46 H 0.361 0.639 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 9.741 22.589 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.159 4.159 5 C 0.036 3.964 6 H 0.067 0.933 7 C -0.211 4.211 8 N -0.348 5.348 9 C 0.342 3.658 10 O -0.466 6.466 11 C -0.139 4.139 12 C -0.080 4.080 13 C -0.133 4.133 14 C 0.020 3.980 15 C 0.011 3.989 16 C -0.088 4.088 17 O -0.228 6.228 18 C -0.033 4.033 19 C 0.282 3.718 20 O -0.417 6.417 21 N -0.294 5.294 22 N -0.393 5.393 23 C -0.341 4.341 24 H 0.074 0.926 25 C -0.260 4.260 26 N -0.640 5.640 27 Si 0.775 3.225 28 H -0.203 1.203 29 H -0.233 1.233 30 H -0.180 1.180 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.252 0.748 40 H 0.189 0.811 41 H 0.200 0.800 42 H 0.147 0.853 43 H 0.186 0.814 44 H 0.135 0.865 45 H 0.271 0.729 46 H 0.194 0.806 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.268 9.836 22.085 24.396 hybrid contribution 0.133 -0.466 -0.779 0.917 sum 3.400 9.370 21.306 23.522 Atomic orbital electron populations 1.22291 0.97220 1.01333 1.00884 1.20546 0.92840 0.95573 0.85223 0.93508 1.22160 0.92398 1.02816 0.98575 1.20957 0.95905 0.80910 0.98641 0.93342 1.22101 1.00443 1.00323 0.98216 1.45711 1.15741 1.11741 1.61595 1.18456 0.82284 0.87785 0.77324 1.90780 1.52937 1.57585 1.45324 1.19701 0.95564 0.93458 1.05135 1.21448 0.99476 0.91945 0.95128 1.20957 0.93484 0.96816 1.02048 1.18292 0.95507 0.83629 1.00602 1.18400 0.86031 0.92845 1.01669 1.20480 0.96036 0.93796 0.98453 1.86289 1.26623 1.29512 1.80349 1.23494 1.05577 0.77444 0.96750 1.21830 0.80076 0.88405 0.81535 1.90811 1.66224 1.19668 1.65042 1.43569 1.31057 1.09998 1.44810 1.42860 1.79747 1.09454 1.07249 1.18973 1.33549 0.94231 0.87310 0.92581 1.25400 1.03027 1.01946 0.95590 1.69869 1.55434 1.37378 1.01274 0.85529 0.77437 0.81867 0.77709 1.20254 1.23308 1.18026 0.93201 0.90023 0.95630 0.86663 0.89654 0.94460 0.89623 0.90879 0.74789 0.81144 0.79984 0.85328 0.81361 0.86487 0.72905 0.80615 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 9.49 71.98 0.68 -3.79 16 2 C 0.17 5.28 2.84 44.99 0.13 5.41 16 3 H 0.05 1.57 7.56 -2.39 -0.02 1.55 16 4 C -0.12 -2.70 4.29 30.60 0.13 -2.57 16 5 C 0.14 3.79 2.52 44.99 0.11 3.90 16 6 H 0.05 1.87 7.05 -2.38 -0.02 1.85 16 7 C -0.15 -3.29 9.48 71.98 0.68 -2.60 16 8 N -0.70 -16.92 4.40 -445.63 -1.96 -18.88 16 9 C 0.55 17.35 7.73 86.72 0.67 18.02 16 10 O -0.59 -24.64 16.00 -4.02 -0.06 -24.70 16 11 C -0.13 -3.31 5.88 -20.07 -0.12 -3.43 16 12 C -0.06 -0.91 9.53 22.53 0.21 -0.69 16 13 C -0.11 -1.33 9.92 22.30 0.22 -1.11 16 14 C 0.12 1.94 6.55 38.36 0.25 2.19 16 15 C 0.06 1.27 6.43 22.56 0.15 1.42 16 16 C -0.07 -1.80 9.53 22.58 0.22 -1.59 16 17 O -0.31 -6.80 10.45 -93.90 -0.98 -7.78 16 18 C 0.04 0.70 7.17 71.25 0.51 1.21 16 19 C 0.49 9.09 7.94 87.63 0.70 9.79 16 20 O -0.54 -13.08 17.95 -3.04 -0.05 -13.14 16 21 N -0.65 -9.42 5.45 -302.67 -1.65 -11.07 16 22 N -0.75 -33.22 4.30 -322.93 -1.39 -34.61 16 23 C -0.21 -11.79 10.41 84.04 0.87 -10.92 16 24 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 25 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 26 N -0.99 -64.98 13.97 21.65 0.30 -64.68 16 27 Si 0.95 47.47 27.74 68.60 1.90 49.37 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 30 H -0.26 -11.76 6.51 99.48 0.65 -11.11 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.41 6.45 6.62 -92.71 -0.61 5.83 16 40 H 0.17 1.31 6.38 -2.91 -0.02 1.29 16 41 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 42 H 0.13 3.96 7.64 -2.91 -0.02 3.94 16 43 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.43 4.07 8.88 -92.71 -0.82 3.25 16 46 H 0.36 15.83 5.66 -92.71 -0.52 15.30 16 47 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -87.39 391.82 1.01 -86.38 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.99 Total: 27.57 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.89 Total: 11.54 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -4.69 Total: -129.24 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -1.10 Total: -45.62 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.90 Total: 49.37 kcal Total: -87.39 1.01 -86.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134608281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.047 kcal (2) G-P(sol) polarization free energy of solvation -87.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds