Wall clock time and date at job start Wed Apr 1 2020 04:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48496 * 109.47141 * 59.99751 * 13 11 9 15 15 H 1.48490 * 109.47071 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00028 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21592 * 120.00210 * 0.02562 * 18 17 2 20 20 C 1.47611 * 120.00356 * 180.02562 * 18 17 2 21 21 C 1.39722 * 120.05161 * 359.72670 * 20 18 17 22 22 C 1.37846 * 120.11262 * 179.69293 * 21 20 18 23 23 C 1.38698 * 120.06757 * 0.59647 * 22 21 20 24 24 C 1.39678 * 120.10562 * 359.68413 * 23 22 21 25 25 C 1.38093 * 120.11853 * 0.02562 * 24 23 22 26 26 N 1.40268 * 119.24229 * 179.97438 * 24 23 22 27 27 C 1.35078 * 118.97165 * 15.49702 * 26 24 23 28 28 O 1.21296 * 120.13754 * 181.67620 * 27 26 24 29 29 C 1.50754 * 119.72562 * 1.65153 * 27 26 24 30 30 O 1.35845 * 120.50178 * 179.73342 * 23 22 21 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 33 33 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 35 35 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 36 36 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 37 37 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 39 39 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 40 40 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 41 41 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 42 42 H 1.08003 * 119.94057 * 359.97438 * 21 20 18 43 43 H 1.07996 * 119.96476 * 180.25020 * 22 21 20 44 44 H 1.07994 * 120.14718 * 179.97438 * 25 24 23 45 45 H 0.97005 * 120.51446 * 195.51862 * 26 24 23 46 46 H 1.08994 * 109.44232 * 88.68446 * 29 27 26 47 47 H 1.09002 * 109.43840 * 208.61558 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.6159 0.2323 2.4367 15 1 8.0026 -2.0568 3.1384 16 1 8.6411 -1.3478 0.9094 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8574 1.1613 2.4119 20 6 2.6394 -0.7141 3.5623 21 6 2.9670 -2.0710 3.5022 22 6 3.4330 -2.7204 4.6253 23 6 3.5662 -2.0312 5.8215 24 6 3.2349 -0.6760 5.8898 25 6 2.7732 -0.0180 4.7670 26 7 3.3760 0.0033 7.1090 27 6 4.1121 -0.5610 8.0910 28 8 4.2231 -0.0066 9.1641 29 6 4.7946 -1.8831 7.8479 30 8 4.0194 -2.6637 6.9350 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6055 -0.2618 -2.1369 35 1 1.7516 -1.7715 -1.2056 36 1 3.6264 -0.6888 -3.4656 37 1 5.1509 -1.1487 -2.6696 38 1 3.7722 -2.2743 -2.6698 39 1 3.6646 -2.0586 0.2387 40 1 5.6745 -3.1228 2.6790 41 1 2.2489 -1.6319 1.1527 42 1 2.8592 -2.6109 2.5730 43 1 3.6893 -3.7683 4.5751 44 1 2.5165 1.0297 4.8194 45 1 2.9513 0.8648 7.2448 46 1 5.7842 -1.7083 7.4258 47 1 4.8922 -2.4198 8.7915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134649368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:45 Heat of formation + Delta-G solvation = -62.158494 kcal Electronic energy + Delta-G solvation = -31964.964123 eV Core-core repulsion = 27727.588854 eV Total energy + Delta-G solvation = -4237.375269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30320 -39.59721 -38.54921 -37.30527 -36.57151 -34.99693 -34.23097 -32.37794 -31.09927 -30.20544 -29.48385 -28.57894 -27.65659 -26.37909 -24.13354 -23.73404 -22.71289 -21.67849 -20.43107 -20.18063 -19.16628 -18.77575 -17.91607 -17.26850 -17.02605 -16.27733 -16.02266 -15.82287 -15.01043 -14.91683 -14.61549 -14.43197 -14.15677 -14.01368 -13.82946 -13.64887 -13.49562 -13.12568 -12.85338 -12.73005 -12.67194 -12.39891 -12.18618 -11.94598 -11.78959 -11.70808 -11.27398 -11.07596 -10.97317 -10.88983 -10.76971 -10.51950 -10.41363 -10.33205 -10.08258 -9.97890 -9.74878 -9.35972 -9.02927 -8.50559 -8.32434 -7.75807 -7.00126 -5.90122 -3.11764 1.08823 1.45533 2.30556 2.77840 3.23758 3.37608 3.41493 3.44695 3.45460 3.74429 4.01888 4.29774 4.52178 4.80213 4.88215 5.02598 5.06725 5.22512 5.37587 5.45761 5.49080 5.50911 5.54547 5.63210 5.70589 5.83960 5.91751 5.96218 5.98084 6.08796 6.15390 6.19521 6.32353 6.35288 6.43673 6.50841 6.54861 6.57189 6.73774 6.79981 6.85887 6.91909 6.99963 7.12230 7.40980 7.62660 7.75897 8.13908 8.30845 8.84060 9.42651 9.94342 10.30747 11.32256 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.004250 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.001703 B = 6586.642079 C = 8144.020878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.048 0.952 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.222 4.222 10 H 0.066 0.934 11 C -0.007 4.007 12 N -0.926 5.926 13 Si 0.897 3.103 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.289 1.289 17 N -0.692 5.692 18 C 0.574 3.426 19 O -0.563 6.563 20 C -0.128 4.128 21 C -0.002 4.002 22 C -0.107 4.107 23 C 0.094 3.906 24 C 0.056 3.944 25 C -0.064 4.064 26 N -0.654 5.654 27 C 0.491 3.509 28 O -0.526 6.526 29 C 0.050 3.950 30 O -0.303 6.303 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.376 0.624 40 H 0.256 0.744 41 H 0.404 0.596 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.414 0.586 46 H 0.099 0.901 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 -1.240 1.703 8.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.059 3.941 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.353 4.353 10 H 0.084 0.916 11 C -0.203 4.203 12 N -0.574 5.574 13 Si 0.729 3.271 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.216 1.216 17 N -0.344 5.344 18 C 0.362 3.638 19 O -0.444 6.444 20 C -0.133 4.133 21 C -0.023 4.023 22 C -0.126 4.126 23 C 0.048 3.952 24 C -0.038 4.038 25 C -0.085 4.085 26 N -0.301 5.301 27 C 0.279 3.721 28 O -0.402 6.402 29 C -0.028 4.028 30 O -0.217 6.217 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.211 0.789 40 H 0.066 0.934 41 H 0.242 0.758 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.253 0.747 46 H 0.116 0.884 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.746 -0.406 2.402 8.120 hybrid contribution 1.201 0.221 0.469 1.308 sum -6.545 -0.184 2.872 7.150 Atomic orbital electron populations 1.22211 0.96203 1.01685 1.01998 1.20819 0.92533 0.97756 0.84388 0.89825 1.22219 0.97760 1.00644 0.96652 1.20300 0.89725 0.95925 0.88180 0.93367 1.22412 1.01534 1.00354 0.98041 1.42446 1.18646 1.39895 1.34806 1.19159 0.93148 1.12903 1.10083 0.91613 1.24464 0.98216 0.98812 0.98765 1.69475 1.37686 1.24440 1.25825 0.86404 0.84879 0.77574 0.78216 1.21655 1.21735 1.21610 1.45865 1.65584 1.14353 1.08576 1.17878 0.76689 0.86038 0.83173 1.90692 1.52293 1.15774 1.85649 1.19654 1.05622 0.94562 0.93417 1.21205 0.90827 0.92662 0.97580 1.20376 1.02293 1.01433 0.88461 1.18853 0.99681 0.89162 0.87550 1.17724 1.07911 0.91473 0.86698 1.20517 0.98444 0.99867 0.89676 1.43630 1.50515 1.23406 1.12548 1.21521 0.79008 0.87988 0.83632 1.90781 1.60844 1.64604 1.23987 1.23140 0.95037 0.89069 0.95552 1.86176 1.67591 1.37503 1.30426 0.92344 0.92125 0.92752 0.90739 0.91694 0.94566 0.92875 0.93581 0.78861 0.93395 0.75767 0.83399 0.84144 0.84499 0.74733 0.88361 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 2 C 0.15 2.23 2.57 -67.93 -0.17 2.05 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.13 -1.83 4.43 -26.73 -0.12 -1.95 16 5 C 0.17 2.89 2.89 -67.93 -0.20 2.70 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 C -0.16 -2.61 9.49 37.16 0.35 -2.25 16 8 N -0.72 -14.72 3.84 -53.42 -0.21 -14.93 16 9 C -0.22 -5.38 9.93 -15.06 -0.15 -5.53 16 10 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 11 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 12 N -0.93 -21.89 10.73 55.49 0.60 -21.29 16 13 Si 0.90 21.02 29.55 -169.99 -5.02 16.00 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 N -0.69 -11.42 3.75 -54.82 -0.21 -11.62 16 18 C 0.57 10.77 7.73 -12.44 -0.10 10.67 16 19 O -0.56 -11.87 16.00 5.28 0.08 -11.79 16 20 C -0.13 -2.27 5.88 -104.95 -0.62 -2.88 16 21 C 0.00 -0.04 7.81 -39.17 -0.31 -0.35 16 22 C -0.11 -1.69 9.98 -39.55 -0.39 -2.09 16 23 C 0.09 1.48 6.45 -38.87 -0.25 1.23 16 24 C 0.06 0.88 6.54 -83.51 -0.55 0.33 16 25 C -0.06 -1.05 9.49 -39.06 -0.37 -1.42 16 26 N -0.65 -9.16 5.47 -9.68 -0.05 -9.21 16 27 C 0.49 7.07 7.94 -10.82 -0.09 6.99 16 28 O -0.53 -8.76 17.95 5.54 0.10 -8.66 16 29 C 0.05 0.61 7.16 36.03 0.26 0.87 16 30 O -0.30 -4.35 10.44 -19.25 -0.20 -4.55 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.38 7.76 5.70 -40.82 -0.23 7.52 16 40 H 0.26 6.11 8.31 -40.82 -0.34 5.77 16 41 H 0.40 6.55 4.52 -40.82 -0.18 6.36 16 42 H 0.15 2.49 5.85 -52.48 -0.31 2.18 16 43 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 44 H 0.14 2.17 7.65 -52.49 -0.40 1.77 16 45 H 0.41 5.05 8.89 -40.82 -0.36 4.69 16 46 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -28.52 386.22 -8.03 -36.54 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -6.50 Total: 17.26 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.44 Total: 6.43 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.13 Total: -57.05 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.02 Total: -25.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.52 -8.03 -36.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134649368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.616 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds