Wall clock time and date at job start Wed Apr 1 2020 04:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48496 * 109.47141 * 59.99751 * 13 11 9 15 15 H 1.48490 * 109.47071 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00028 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21592 * 120.00210 * 0.02562 * 18 17 2 20 20 C 1.47611 * 120.00356 * 180.02562 * 18 17 2 21 21 C 1.39722 * 120.05161 * 359.72670 * 20 18 17 22 22 C 1.37846 * 120.11262 * 179.69293 * 21 20 18 23 23 C 1.38698 * 120.06757 * 0.59647 * 22 21 20 24 24 C 1.39678 * 120.10562 * 359.68413 * 23 22 21 25 25 C 1.38093 * 120.11853 * 0.02562 * 24 23 22 26 26 N 1.40268 * 119.24229 * 179.97438 * 24 23 22 27 27 C 1.35078 * 118.97165 * 15.49702 * 26 24 23 28 28 O 1.21296 * 120.13754 * 181.67620 * 27 26 24 29 29 C 1.50754 * 119.72562 * 1.65153 * 27 26 24 30 30 O 1.35845 * 120.50178 * 179.73342 * 23 22 21 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 33 33 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 35 35 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 36 36 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 37 37 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 39 39 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 40 40 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 41 41 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 42 42 H 1.08003 * 119.94057 * 359.97438 * 21 20 18 43 43 H 1.07996 * 119.96476 * 180.25020 * 22 21 20 44 44 H 1.07994 * 120.14718 * 179.97438 * 25 24 23 45 45 H 0.97005 * 120.51446 * 195.51862 * 26 24 23 46 46 H 1.08994 * 109.44232 * 88.68446 * 29 27 26 47 47 H 1.09002 * 109.43840 * 208.61558 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.6159 0.2323 2.4367 15 1 8.0026 -2.0568 3.1384 16 1 8.6411 -1.3478 0.9094 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8574 1.1613 2.4119 20 6 2.6394 -0.7141 3.5623 21 6 2.9670 -2.0710 3.5022 22 6 3.4330 -2.7204 4.6253 23 6 3.5662 -2.0312 5.8215 24 6 3.2349 -0.6760 5.8898 25 6 2.7732 -0.0180 4.7670 26 7 3.3760 0.0033 7.1090 27 6 4.1121 -0.5610 8.0910 28 8 4.2231 -0.0066 9.1641 29 6 4.7946 -1.8831 7.8479 30 8 4.0194 -2.6637 6.9350 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6055 -0.2618 -2.1369 35 1 1.7516 -1.7715 -1.2056 36 1 3.6264 -0.6888 -3.4656 37 1 5.1509 -1.1487 -2.6696 38 1 3.7722 -2.2743 -2.6698 39 1 3.6646 -2.0586 0.2387 40 1 5.6745 -3.1228 2.6790 41 1 2.2489 -1.6319 1.1527 42 1 2.8592 -2.6109 2.5730 43 1 3.6893 -3.7683 4.5751 44 1 2.5165 1.0297 4.8194 45 1 2.9513 0.8648 7.2448 46 1 5.7842 -1.7083 7.4258 47 1 4.8922 -2.4198 8.7915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134649368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:44 Heat of formation + Delta-G solvation = -80.122530 kcal Electronic energy + Delta-G solvation = -31965.743102 eV Core-core repulsion = 27727.588854 eV Total energy + Delta-G solvation = -4238.154248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.49250 -40.95754 -39.78345 -38.56443 -37.95068 -36.23026 -35.72487 -33.97697 -32.45739 -31.48395 -30.75885 -30.05401 -28.79804 -27.54584 -25.51310 -25.36304 -23.97132 -22.94043 -21.70416 -21.54851 -20.44563 -19.97046 -19.15361 -19.01668 -18.20214 -17.53859 -17.32353 -17.08140 -16.58678 -16.13000 -15.90790 -15.78859 -15.54484 -15.45347 -15.26483 -15.00934 -14.82836 -14.37079 -14.18380 -13.98041 -13.96962 -13.66350 -13.52161 -13.26228 -13.14621 -12.86243 -12.74928 -12.56644 -12.39874 -12.25937 -12.20242 -12.12110 -11.78617 -11.65673 -11.52571 -11.35677 -11.28405 -10.83639 -10.78037 -9.87518 -9.61823 -9.02801 -8.68317 -7.76732 -4.95274 -0.20191 0.18632 1.12568 1.47128 1.50457 1.53944 1.64346 1.95898 2.21169 2.47532 2.65336 2.88152 2.96356 3.56529 3.57529 3.80391 3.93781 3.98160 4.08425 4.14388 4.23406 4.24750 4.25600 4.41491 4.50391 4.62532 4.73201 4.76734 4.88302 4.91219 4.93032 4.97766 5.11121 5.15672 5.19891 5.22494 5.38619 5.41899 5.44049 5.47559 5.61380 5.67418 5.69568 5.70886 5.82772 6.20598 6.47745 6.62206 6.76539 7.43276 7.56832 8.24546 8.54876 9.43542 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.004250 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.001703 B = 6586.642079 C = 8144.020878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.056 0.944 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.026 0.974 7 C -0.154 4.154 8 N -0.717 5.717 9 C -0.230 4.230 10 H 0.048 0.952 11 C -0.034 4.034 12 N -0.919 5.919 13 Si 0.927 3.073 14 H -0.305 1.305 15 H -0.291 1.291 16 H -0.294 1.294 17 N -0.684 5.684 18 C 0.566 3.434 19 O -0.596 6.596 20 C -0.146 4.146 21 C -0.001 4.001 22 C -0.109 4.109 23 C 0.095 3.905 24 C 0.061 3.939 25 C -0.071 4.071 26 N -0.651 5.651 27 C 0.491 3.509 28 O -0.549 6.549 29 C 0.048 3.952 30 O -0.303 6.303 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.050 0.950 39 H 0.377 0.623 40 H 0.253 0.747 41 H 0.406 0.594 42 H 0.146 0.854 43 H 0.154 0.846 44 H 0.137 0.863 45 H 0.420 0.580 46 H 0.112 0.888 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -2.501 1.336 9.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.074 0.926 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.214 4.214 8 N -0.360 5.360 9 C -0.363 4.363 10 H 0.066 0.934 11 C -0.230 4.230 12 N -0.569 5.569 13 Si 0.760 3.240 14 H -0.233 1.233 15 H -0.217 1.217 16 H -0.222 1.222 17 N -0.335 5.335 18 C 0.355 3.645 19 O -0.480 6.480 20 C -0.150 4.150 21 C -0.021 4.021 22 C -0.128 4.128 23 C 0.048 3.952 24 C -0.034 4.034 25 C -0.092 4.092 26 N -0.298 5.298 27 C 0.279 3.721 28 O -0.427 6.427 29 C -0.029 4.029 30 O -0.217 6.217 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.212 0.788 40 H 0.063 0.937 41 H 0.245 0.755 42 H 0.164 0.836 43 H 0.172 0.828 44 H 0.155 0.845 45 H 0.260 0.740 46 H 0.130 0.870 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.647 -1.686 2.010 9.036 hybrid contribution 1.479 0.656 0.617 1.732 sum -7.167 -1.030 2.627 7.703 Atomic orbital electron populations 1.22113 0.93808 1.02846 1.02284 1.20965 0.94345 0.96299 0.84287 0.92596 1.22135 0.94809 1.01712 0.97184 1.20473 0.92139 0.94353 0.87697 0.95566 1.22270 0.99971 1.00903 0.98211 1.42432 1.17614 1.40145 1.35805 1.19129 0.94551 1.12409 1.10174 0.93423 1.24736 0.99230 0.99583 0.99432 1.69504 1.37442 1.24234 1.25671 0.85966 0.84041 0.76321 0.77630 1.23336 1.21702 1.22189 1.45904 1.64678 1.14325 1.08554 1.18151 0.76505 0.85803 0.84077 1.90662 1.53993 1.17061 1.86239 1.19727 1.06653 0.95126 0.93473 1.21167 0.90835 0.92203 0.97918 1.20524 1.01945 1.02090 0.88276 1.18944 0.99115 0.89078 0.88029 1.17705 1.07295 0.91598 0.86806 1.20564 0.98781 1.00016 0.89845 1.43650 1.50469 1.23692 1.12031 1.21924 0.78580 0.88516 0.83082 1.90776 1.61700 1.65457 1.24810 1.23457 0.94761 0.88134 0.96545 1.86183 1.67762 1.37694 1.30035 0.94242 0.89682 0.91082 0.87463 0.90192 0.91523 0.95407 0.93135 0.78845 0.93697 0.75513 0.83612 0.82793 0.84486 0.73982 0.87040 0.80716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.48 71.98 0.68 -2.79 16 2 C 0.15 4.17 2.57 44.99 0.12 4.29 16 3 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 4 C -0.12 -2.98 4.43 30.60 0.14 -2.84 16 5 C 0.16 5.40 2.89 44.99 0.13 5.53 16 6 H 0.03 0.99 8.08 -2.39 -0.02 0.97 16 7 C -0.15 -4.63 9.49 71.98 0.68 -3.95 16 8 N -0.72 -29.31 3.84 -322.93 -1.24 -30.55 16 9 C -0.23 -11.28 9.93 84.04 0.83 -10.44 16 10 H 0.05 2.46 7.83 -2.91 -0.02 2.44 16 11 C -0.03 -1.69 5.50 84.86 0.47 -1.23 16 12 N -0.92 -42.90 10.73 21.65 0.23 -42.67 16 13 Si 0.93 43.21 29.55 68.60 2.03 45.23 16 14 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 15 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 16 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 17 N -0.68 -22.42 3.75 -445.61 -1.67 -24.09 16 18 C 0.57 21.60 7.73 86.72 0.67 22.27 16 19 O -0.60 -25.88 16.00 -4.01 -0.06 -25.94 16 20 C -0.15 -5.19 5.88 -20.07 -0.12 -5.31 16 21 C 0.00 -0.04 7.81 22.54 0.18 0.14 16 22 C -0.11 -3.35 9.98 22.29 0.22 -3.13 16 23 C 0.10 2.87 6.45 22.73 0.15 3.01 16 24 C 0.06 1.84 6.54 38.10 0.25 2.09 16 25 C -0.07 -2.35 9.49 22.61 0.21 -2.14 16 26 N -0.65 -17.67 5.47 -302.76 -1.66 -19.33 16 27 C 0.49 13.38 7.94 87.63 0.70 14.08 16 28 O -0.55 -17.60 17.95 -3.08 -0.06 -17.66 16 29 C 0.05 1.06 7.16 71.25 0.51 1.57 16 30 O -0.30 -8.02 10.44 -91.81 -0.96 -8.98 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.38 15.23 5.70 -92.71 -0.53 14.70 16 40 H 0.25 11.83 8.31 -92.70 -0.77 11.06 16 41 H 0.41 12.91 4.52 -92.71 -0.42 12.49 16 42 H 0.15 4.83 5.85 -2.91 -0.02 4.82 16 43 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.14 4.47 7.65 -2.91 -0.02 4.45 16 45 H 0.42 10.07 8.89 -92.70 -0.82 9.24 16 46 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.18 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -61.73 386.22 1.69 -60.04 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -0.74 Total: 42.78 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 5.82 Total: 21.16 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -4.34 Total: -116.64 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -1.08 Total: -52.58 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -61.73 1.69 -60.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134649368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.079 kcal (2) G-P(sol) polarization free energy of solvation -61.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds