Wall clock time and date at job start Wed Apr 1 2020 04:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 109.47170 * 2 1 4 4 C 1.52994 * 109.47473 * 240.00052 * 2 1 3 5 5 C 1.52994 * 109.47579 * 175.00185 * 4 2 1 6 6 H 1.09008 * 109.46999 * 304.99903 * 5 4 2 7 7 C 1.53001 * 109.47523 * 184.99579 * 5 4 2 8 8 N 1.46500 * 109.47446 * 64.99644 * 5 4 2 9 9 C 1.34769 * 120.00339 * 205.00730 * 8 5 4 10 10 O 1.21284 * 120.00275 * 359.97438 * 9 8 5 11 11 C 1.50705 * 120.00199 * 180.02562 * 9 8 5 12 12 N 1.46500 * 109.47381 * 179.97438 * 11 9 8 13 13 C 1.39457 * 126.25400 * 89.99816 * 12 11 9 14 14 C 1.38616 * 133.36347 * 0.02562 * 13 12 11 15 15 C 1.38128 * 119.82381 * 179.97438 * 14 13 12 16 16 C 1.38410 * 120.18771 * 0.02562 * 15 14 13 17 17 C 1.38125 * 120.31366 * 359.97438 * 16 15 14 18 18 C 1.38614 * 119.91363 * 0.02562 * 17 16 15 19 19 O 1.35565 * 132.99848 * 180.02562 * 18 17 16 20 20 C 1.34221 * 109.17859 * 179.97438 * 19 18 17 21 21 O 1.21601 * 125.27151 * 179.97438 * 20 19 18 22 22 N 1.46504 * 109.47044 * 119.99545 * 2 1 3 23 23 C 1.36935 * 119.99882 * 275.00319 * 22 2 1 24 24 H 1.08002 * 120.00423 * 359.97438 * 23 22 2 25 25 C 1.38817 * 119.99551 * 180.02562 * 23 22 2 26 26 N 1.31620 * 119.99992 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99986 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46832 * 59.99853 * 27 25 23 29 29 H 1.48497 * 109.47175 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.46866 * 300.00167 * 27 25 23 31 31 H 1.08994 * 109.47408 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47241 * 300.00382 * 1 2 3 33 33 H 1.08999 * 109.47007 * 60.00030 * 1 2 3 34 34 H 1.08996 * 109.47341 * 54.99361 * 4 2 1 35 35 H 1.09006 * 109.46691 * 294.99698 * 4 2 1 36 36 H 1.08997 * 109.46837 * 299.99984 * 7 5 4 37 37 H 1.08998 * 109.46898 * 60.00055 * 7 5 4 38 38 H 1.08994 * 109.47278 * 179.97438 * 7 5 4 39 39 H 0.97003 * 119.99626 * 24.99614 * 8 5 4 40 40 H 1.08997 * 109.47294 * 59.99510 * 11 9 8 41 41 H 1.09004 * 109.46908 * 299.99707 * 11 9 8 42 42 H 1.07997 * 120.08589 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.90730 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.84829 * 179.97438 * 16 15 14 45 45 H 1.07995 * 120.04491 * 179.72531 * 17 16 15 46 46 H 0.96998 * 119.99539 * 95.00232 * 22 2 1 47 47 H 0.97001 * 119.99435 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0646 -1.2251 -2.6239 8 7 4.1537 -1.3341 -0.1823 9 6 5.3747 -0.9910 0.2735 10 8 5.9863 -0.0857 -0.2532 11 6 5.9807 -1.7329 1.4369 12 7 7.3016 -1.1750 1.7373 13 6 7.5741 -0.1291 2.6185 14 6 6.7778 0.6629 3.4309 15 6 7.3555 1.6447 4.2122 16 6 8.7256 1.8393 4.1850 17 6 9.5254 1.0540 3.3779 18 6 8.9548 0.0663 2.5904 19 8 9.4714 -0.8366 1.7212 20 6 8.4754 -1.5785 1.2121 21 8 8.6111 -2.4756 0.4024 22 7 2.0183 -0.6905 1.1963 23 6 2.1490 -0.0073 2.3758 24 1 1.8925 1.0407 2.4241 25 6 2.6122 -0.6616 3.5091 26 7 2.9253 -1.9386 3.4500 27 14 2.7913 0.2705 5.1180 28 1 1.4690 0.8073 5.5288 29 1 3.3001 -0.6479 6.1682 30 1 3.7463 1.3930 4.9361 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 -2.1369 35 1 1.7517 -1.7715 -1.2054 36 1 3.7723 -2.2742 -2.6697 37 1 3.6265 -0.6887 -3.4656 38 1 5.1508 -1.1478 -2.6700 39 1 3.6647 -2.0584 0.2388 40 1 6.0816 -2.7879 1.1822 41 1 5.3354 -1.6299 2.3093 42 1 5.7086 0.5127 3.4531 43 1 6.7364 2.2622 4.8460 44 1 9.1714 2.6088 4.7977 45 1 10.5934 1.2126 3.3567 46 1 2.2490 -1.6317 1.1527 47 1 3.2486 -2.3958 4.2421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146275543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:43 Heat of formation + Delta-G solvation = -34.709331 kcal Electronic energy + Delta-G solvation = -32335.557545 eV Core-core repulsion = 28099.372561 eV Total energy + Delta-G solvation = -4236.184984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.08768 -39.47162 -38.42858 -37.33118 -36.83555 -35.49752 -34.23852 -32.45229 -31.05553 -30.59790 -29.68177 -28.72071 -27.81529 -26.38390 -23.80119 -23.34172 -22.63378 -22.57564 -20.88035 -20.34916 -19.65113 -18.47910 -17.59898 -17.54181 -17.30146 -16.38263 -16.36203 -15.89984 -15.14045 -14.88970 -14.64730 -14.45317 -14.09502 -13.92221 -13.88302 -13.79756 -13.52188 -13.18397 -13.06013 -12.80628 -12.34304 -12.24990 -12.24211 -12.03147 -11.85350 -11.75133 -11.70058 -11.24176 -11.06991 -10.93197 -10.85343 -10.83481 -10.69151 -10.44477 -10.38407 -10.01502 -9.81615 -9.39699 -9.10546 -8.73181 -8.49006 -7.99842 -7.10228 -5.96223 -3.22357 1.16482 1.23038 2.16421 2.66750 2.97324 3.11881 3.26778 3.35183 3.37196 3.62103 3.77626 4.43090 4.45009 4.81468 4.93762 4.99292 5.15821 5.19408 5.23192 5.32990 5.39645 5.42804 5.44604 5.53754 5.62458 5.72402 5.82317 5.86726 5.91604 5.94980 6.07606 6.09142 6.17191 6.26000 6.32026 6.33672 6.42410 6.45542 6.48772 6.52667 6.65440 6.76946 6.96518 7.05907 7.34010 7.55057 7.79620 8.03242 8.23430 8.71922 9.34590 9.89322 10.25688 11.25974 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009361 B = 0.005165 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.258092 B = 5419.760046 C = 7452.970065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.048 0.952 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.083 0.917 7 C -0.163 4.163 8 N -0.691 5.691 9 C 0.514 3.486 10 O -0.551 6.551 11 C 0.107 3.893 12 N -0.522 5.522 13 C 0.089 3.911 14 C -0.090 4.090 15 C -0.099 4.099 16 C -0.114 4.114 17 C -0.085 4.085 18 C 0.029 3.971 19 O -0.239 6.239 20 C 0.640 3.360 21 O -0.493 6.493 22 N -0.717 5.717 23 C -0.221 4.221 24 H 0.068 0.932 25 C -0.015 4.015 26 N -0.938 5.938 27 Si 0.892 3.108 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.283 1.283 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.406 0.594 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.378 0.622 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 3.424 -2.265 6.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.101 0.899 7 C -0.221 4.221 8 N -0.344 5.344 9 C 0.298 3.702 10 O -0.429 6.429 11 C -0.016 4.016 12 N -0.252 5.252 13 C -0.009 4.009 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.133 4.133 17 C -0.103 4.103 18 C -0.018 4.018 19 O -0.145 6.145 20 C 0.396 3.604 21 O -0.377 6.377 22 N -0.360 5.360 23 C -0.353 4.353 24 H 0.085 0.915 25 C -0.209 4.209 26 N -0.588 5.588 27 Si 0.723 3.277 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.210 1.210 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.244 0.756 40 H 0.136 0.864 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.213 0.787 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.896 3.562 -3.085 7.547 hybrid contribution -0.456 -0.250 1.118 1.233 sum 5.440 3.312 -1.966 6.665 Atomic orbital electron populations 1.22409 0.99181 1.00787 0.99972 1.20296 0.91714 0.95715 0.86336 0.93378 1.22207 0.93824 1.01731 0.99427 1.20817 0.92514 0.97209 0.84780 0.89928 1.22206 1.01840 1.00906 0.97185 1.45853 1.17364 1.37597 1.33579 1.20462 0.81912 0.83888 0.83892 1.90668 1.61928 1.30970 1.59337 1.21652 0.80485 0.98423 1.01078 1.45290 1.07859 1.32311 1.39722 1.18510 0.93790 0.92842 0.95766 1.20412 1.00773 0.94568 0.95348 1.21028 0.94959 0.97216 0.98611 1.20884 0.93366 0.99672 0.99386 1.19922 1.00752 0.93572 0.96100 1.18998 0.90119 0.95771 0.96886 1.84937 1.34768 1.42792 1.52003 1.18416 0.78558 0.82207 0.81243 1.91114 1.82946 1.29806 1.33824 1.42485 1.77940 1.10184 1.05422 1.19213 1.34988 0.93808 0.87280 0.91450 1.24579 1.02937 0.95963 0.97458 1.69573 1.51950 1.08253 1.29007 0.86503 0.78129 0.78883 0.84198 1.21460 1.21562 1.20994 0.93555 0.92876 0.94536 0.90720 0.91613 0.92680 0.92071 0.92424 0.75569 0.86401 0.83326 0.83917 0.84575 0.84392 0.84503 0.78699 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.49 37.16 0.35 -2.27 16 2 C 0.17 2.91 2.89 -67.93 -0.20 2.71 16 3 H 0.05 0.90 8.08 -51.92 -0.42 0.48 16 4 C -0.13 -1.87 4.43 -26.74 -0.12 -1.99 16 5 C 0.15 2.35 2.57 -67.93 -0.17 2.17 16 6 H 0.08 1.47 7.58 -51.92 -0.39 1.07 16 7 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 8 N -0.69 -11.72 3.80 -53.81 -0.20 -11.93 16 9 C 0.51 9.89 7.86 -10.99 -0.09 9.80 16 10 O -0.55 -12.24 16.09 5.55 0.09 -12.15 16 11 C 0.11 1.93 6.52 -5.19 -0.03 1.89 16 12 N -0.52 -9.72 2.29 -120.30 -0.28 -10.00 16 13 C 0.09 1.56 6.84 -83.79 -0.57 0.99 16 14 C -0.09 -1.49 10.04 -39.48 -0.40 -1.89 16 15 C -0.10 -1.31 10.04 -39.56 -0.40 -1.71 16 16 C -0.11 -1.26 10.03 -39.56 -0.40 -1.66 16 17 C -0.08 -1.04 10.06 -39.48 -0.40 -1.44 16 18 C 0.03 0.46 7.35 -38.98 -0.29 0.18 16 19 O -0.24 -4.28 10.72 -21.98 -0.24 -4.51 16 20 C 0.64 12.53 9.07 54.05 0.49 13.02 16 21 O -0.49 -10.55 17.81 -19.01 -0.34 -10.89 16 22 N -0.72 -14.71 3.84 -53.42 -0.21 -14.92 16 23 C -0.22 -5.22 9.93 -15.06 -0.15 -5.37 16 24 H 0.07 1.63 7.83 -52.49 -0.41 1.22 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.94 -22.80 12.78 55.49 0.71 -22.09 16 27 Si 0.89 19.59 29.55 -169.99 -5.02 14.57 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 30 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.41 6.80 6.51 -40.82 -0.27 6.53 16 40 H 0.12 1.91 8.06 -51.93 -0.42 1.49 16 41 H 0.15 2.83 7.86 -51.93 -0.41 2.42 16 42 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 43 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.38 7.93 5.70 -40.82 -0.23 7.70 16 47 H 0.26 6.27 8.31 -40.82 -0.34 5.93 16 LS Contribution 397.62 15.07 5.99 5.99 Total: -1.00 -28.78 397.62 -8.36 -37.14 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -6.76 Total: 16.64 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -2.11 Total: 12.14 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.02 Total: -58.93 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.48 Total: -27.55 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.78 -8.36 -37.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.432 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds