Wall clock time and date at job start Wed Apr 1 2020 04:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 109.47170 * 2 1 4 4 C 1.52994 * 109.47473 * 240.00052 * 2 1 3 5 5 C 1.52994 * 109.47579 * 175.00185 * 4 2 1 6 6 H 1.09008 * 109.46999 * 304.99903 * 5 4 2 7 7 C 1.53001 * 109.47523 * 184.99579 * 5 4 2 8 8 N 1.46500 * 109.47446 * 64.99644 * 5 4 2 9 9 C 1.34769 * 120.00339 * 205.00730 * 8 5 4 10 10 O 1.21284 * 120.00275 * 359.97438 * 9 8 5 11 11 C 1.50705 * 120.00199 * 180.02562 * 9 8 5 12 12 N 1.46500 * 109.47381 * 179.97438 * 11 9 8 13 13 C 1.39457 * 126.25400 * 89.99816 * 12 11 9 14 14 C 1.38616 * 133.36347 * 0.02562 * 13 12 11 15 15 C 1.38128 * 119.82381 * 179.97438 * 14 13 12 16 16 C 1.38410 * 120.18771 * 0.02562 * 15 14 13 17 17 C 1.38125 * 120.31366 * 359.97438 * 16 15 14 18 18 C 1.38614 * 119.91363 * 0.02562 * 17 16 15 19 19 O 1.35565 * 132.99848 * 180.02562 * 18 17 16 20 20 C 1.34221 * 109.17859 * 179.97438 * 19 18 17 21 21 O 1.21601 * 125.27151 * 179.97438 * 20 19 18 22 22 N 1.46504 * 109.47044 * 119.99545 * 2 1 3 23 23 C 1.36935 * 119.99882 * 275.00319 * 22 2 1 24 24 H 1.08002 * 120.00423 * 359.97438 * 23 22 2 25 25 C 1.38817 * 119.99551 * 180.02562 * 23 22 2 26 26 N 1.31620 * 119.99992 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99986 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46832 * 59.99853 * 27 25 23 29 29 H 1.48497 * 109.47175 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.46866 * 300.00167 * 27 25 23 31 31 H 1.08994 * 109.47408 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47241 * 300.00382 * 1 2 3 33 33 H 1.08999 * 109.47007 * 60.00030 * 1 2 3 34 34 H 1.08996 * 109.47341 * 54.99361 * 4 2 1 35 35 H 1.09006 * 109.46691 * 294.99698 * 4 2 1 36 36 H 1.08997 * 109.46837 * 299.99984 * 7 5 4 37 37 H 1.08998 * 109.46898 * 60.00055 * 7 5 4 38 38 H 1.08994 * 109.47278 * 179.97438 * 7 5 4 39 39 H 0.97003 * 119.99626 * 24.99614 * 8 5 4 40 40 H 1.08997 * 109.47294 * 59.99510 * 11 9 8 41 41 H 1.09004 * 109.46908 * 299.99707 * 11 9 8 42 42 H 1.07997 * 120.08589 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.90730 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.84829 * 179.97438 * 16 15 14 45 45 H 1.07995 * 120.04491 * 179.72531 * 17 16 15 46 46 H 0.96998 * 119.99539 * 95.00232 * 22 2 1 47 47 H 0.97001 * 119.99435 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0646 -1.2251 -2.6239 8 7 4.1537 -1.3341 -0.1823 9 6 5.3747 -0.9910 0.2735 10 8 5.9863 -0.0857 -0.2532 11 6 5.9807 -1.7329 1.4369 12 7 7.3016 -1.1750 1.7373 13 6 7.5741 -0.1291 2.6185 14 6 6.7778 0.6629 3.4309 15 6 7.3555 1.6447 4.2122 16 6 8.7256 1.8393 4.1850 17 6 9.5254 1.0540 3.3779 18 6 8.9548 0.0663 2.5904 19 8 9.4714 -0.8366 1.7212 20 6 8.4754 -1.5785 1.2121 21 8 8.6111 -2.4756 0.4024 22 7 2.0183 -0.6905 1.1963 23 6 2.1490 -0.0073 2.3758 24 1 1.8925 1.0407 2.4241 25 6 2.6122 -0.6616 3.5091 26 7 2.9253 -1.9386 3.4500 27 14 2.7913 0.2705 5.1180 28 1 1.4690 0.8073 5.5288 29 1 3.3001 -0.6479 6.1682 30 1 3.7463 1.3930 4.9361 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6054 -0.2618 -2.1369 35 1 1.7517 -1.7715 -1.2054 36 1 3.7723 -2.2742 -2.6697 37 1 3.6265 -0.6887 -3.4656 38 1 5.1508 -1.1478 -2.6700 39 1 3.6647 -2.0584 0.2388 40 1 6.0816 -2.7879 1.1822 41 1 5.3354 -1.6299 2.3093 42 1 5.7086 0.5127 3.4531 43 1 6.7364 2.2622 4.8460 44 1 9.1714 2.6088 4.7977 45 1 10.5934 1.2126 3.3567 46 1 2.2490 -1.6317 1.1527 47 1 3.2486 -2.3958 4.2421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146275543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:42 Heat of formation + Delta-G solvation = -50.412584 kcal Electronic energy + Delta-G solvation = -32336.238489 eV Core-core repulsion = 28099.372561 eV Total energy + Delta-G solvation = -4236.865928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.42595 -40.95359 -39.72412 -38.70141 -38.27562 -36.89317 -35.78625 -34.08904 -32.49359 -31.74208 -30.96766 -30.25656 -29.18034 -27.61238 -25.56121 -24.59166 -23.95576 -23.83339 -22.21010 -21.75095 -21.10958 -19.68973 -19.11696 -18.95183 -18.88761 -17.84671 -17.75162 -17.27158 -16.68439 -16.37292 -15.98669 -15.75391 -15.55715 -15.41446 -15.20873 -15.03531 -15.00238 -14.55789 -14.39370 -14.23792 -13.65616 -13.60167 -13.43208 -13.32482 -13.30783 -13.12902 -12.88206 -12.74568 -12.59618 -12.39424 -12.30106 -12.16182 -12.13362 -12.06467 -11.74367 -11.58361 -11.42049 -10.89963 -10.86160 -9.95058 -9.87790 -9.26928 -8.82863 -7.83329 -5.06778 0.02166 0.09056 0.77014 1.21209 1.48506 1.53714 1.56476 1.58492 1.70055 2.33314 2.56632 2.62634 3.25272 3.45615 3.49929 3.64567 3.80690 3.87074 4.05070 4.09671 4.14536 4.15489 4.23939 4.32477 4.34771 4.35187 4.54850 4.65544 4.68069 4.80473 4.86351 4.89381 4.93628 5.05257 5.11044 5.12381 5.15535 5.26577 5.32116 5.38689 5.41036 5.55992 5.61581 5.61979 5.69741 6.03684 6.32558 6.37901 6.57367 7.23168 7.47419 8.18363 8.46980 9.37030 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009361 B = 0.005165 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.258092 B = 5419.760046 C = 7452.970065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.030 0.970 4 C -0.119 4.119 5 C 0.148 3.852 6 H 0.057 0.943 7 C -0.153 4.153 8 N -0.682 5.682 9 C 0.510 3.490 10 O -0.586 6.586 11 C 0.113 3.887 12 N -0.524 5.524 13 C 0.056 3.944 14 C -0.114 4.114 15 C -0.095 4.095 16 C -0.090 4.090 17 C -0.071 4.071 18 C 0.007 3.993 19 O -0.240 6.240 20 C 0.633 3.367 21 O -0.525 6.525 22 N -0.721 5.721 23 C -0.224 4.224 24 H 0.056 0.944 25 C -0.050 4.050 26 N -0.947 5.947 27 Si 0.931 3.069 28 H -0.297 1.297 29 H -0.297 1.297 30 H -0.271 1.271 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.031 0.969 39 H 0.408 0.592 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.158 0.842 44 H 0.190 0.810 45 H 0.175 0.825 46 H 0.375 0.625 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 4.868 -2.146 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.048 0.952 4 C -0.157 4.157 5 C 0.044 3.956 6 H 0.075 0.925 7 C -0.211 4.211 8 N -0.333 5.333 9 C 0.295 3.705 10 O -0.467 6.467 11 C -0.011 4.011 12 N -0.254 5.254 13 C -0.041 4.041 14 C -0.135 4.135 15 C -0.114 4.114 16 C -0.109 4.109 17 C -0.089 4.089 18 C -0.039 4.039 19 O -0.146 6.146 20 C 0.389 3.611 21 O -0.411 6.411 22 N -0.364 5.364 23 C -0.356 4.356 24 H 0.074 0.926 25 C -0.243 4.243 26 N -0.598 5.598 27 Si 0.763 3.237 28 H -0.224 1.224 29 H -0.224 1.224 30 H -0.197 1.197 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.050 0.950 39 H 0.247 0.753 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.132 0.868 43 H 0.176 0.824 44 H 0.207 0.793 45 H 0.192 0.808 46 H 0.210 0.790 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.181 5.040 -2.968 8.509 hybrid contribution -0.587 -0.553 1.144 1.399 sum 5.594 4.487 -1.825 7.399 Atomic orbital electron populations 1.22267 0.97698 1.01000 1.00392 1.20471 0.92659 0.94912 0.86495 0.95177 1.22122 0.92306 1.02330 0.98943 1.20962 0.93634 0.95809 0.85189 0.92513 1.22112 1.00205 1.02083 0.96704 1.45901 1.16530 1.37253 1.33662 1.20659 0.82373 0.83518 0.83945 1.90634 1.62937 1.32534 1.60585 1.21570 0.80420 0.99010 1.00104 1.45294 1.07516 1.32697 1.39898 1.18808 0.95000 0.93508 0.96760 1.20401 0.99543 0.96418 0.97157 1.21407 0.96583 0.95877 0.97508 1.21459 0.92042 0.99286 0.98072 1.20538 1.02856 0.91425 0.94087 1.19576 0.89688 0.96821 0.97824 1.84882 1.34208 1.43070 1.52413 1.18482 0.79050 0.82277 0.81259 1.91063 1.83604 1.31203 1.35258 1.42535 1.78135 1.10007 1.05683 1.19290 1.34311 0.93475 0.88531 0.92563 1.24971 1.03563 0.96612 0.99176 1.69655 1.52598 1.08726 1.28807 0.85860 0.77591 0.78354 0.81914 1.22432 1.22386 1.19705 0.93367 0.95165 0.91412 0.87350 0.90350 0.91146 0.89392 0.94979 0.75332 0.85229 0.84513 0.86751 0.82442 0.79301 0.80752 0.79021 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.49 71.98 0.68 -3.99 16 2 C 0.16 5.49 2.89 44.99 0.13 5.62 16 3 H 0.03 1.13 8.08 -2.38 -0.02 1.11 16 4 C -0.12 -3.08 4.43 30.59 0.14 -2.95 16 5 C 0.15 4.53 2.57 44.99 0.12 4.64 16 6 H 0.06 2.05 7.58 -2.38 -0.02 2.03 16 7 C -0.15 -3.94 9.48 71.98 0.68 -3.26 16 8 N -0.68 -23.68 3.80 -442.53 -1.68 -25.36 16 9 C 0.51 20.59 7.86 87.66 0.69 21.28 16 10 O -0.59 -27.34 16.09 -3.04 -0.05 -27.39 16 11 C 0.11 4.31 6.52 85.63 0.56 4.86 16 12 N -0.52 -20.57 2.29 -765.12 -1.75 -22.33 16 13 C 0.06 2.03 6.84 38.32 0.26 2.29 16 14 C -0.11 -3.84 10.04 22.33 0.22 -3.61 16 15 C -0.10 -2.30 10.04 22.28 0.22 -2.07 16 16 C -0.09 -1.60 10.03 22.28 0.22 -1.38 16 17 C -0.07 -1.50 10.06 22.33 0.22 -1.28 16 18 C 0.01 0.21 7.35 22.66 0.17 0.38 16 19 O -0.24 -8.75 10.72 8.54 0.09 -8.66 16 20 C 0.63 25.94 9.07 129.79 1.18 27.12 16 21 O -0.52 -23.54 17.81 19.18 0.34 -23.20 16 22 N -0.72 -29.82 3.84 -322.93 -1.24 -31.06 16 23 C -0.22 -10.77 9.93 84.03 0.83 -9.93 16 24 H 0.06 2.79 7.83 -2.91 -0.02 2.77 16 25 C -0.05 -2.43 5.50 84.86 0.47 -1.97 16 26 N -0.95 -47.09 12.78 21.65 0.28 -46.81 16 27 Si 0.93 40.80 29.55 68.60 2.03 42.83 16 28 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 29 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 30 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.41 13.90 6.51 -92.71 -0.60 13.29 16 40 H 0.13 4.49 8.06 -2.39 -0.02 4.47 16 41 H 0.14 5.57 7.86 -2.38 -0.02 5.55 16 42 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 44 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 45 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 46 H 0.38 15.86 5.70 -92.71 -0.53 15.33 16 47 H 0.25 12.50 8.31 -92.71 -0.77 11.73 16 Total: -1.00 -66.58 397.62 4.68 -61.91 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: -0.13 Total: 44.34 kcal Atomic # 6 Polarization: 28.94 SS G_CDS: 6.80 Total: 35.74 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -4.40 Total: -125.57 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: 0.38 Total: -59.24 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -66.58 4.68 -61.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.493 kcal (2) G-P(sol) polarization free energy of solvation -66.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds