Wall clock time and date at job start Wed Apr 1 2020 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47196 * 2 1 4 4 N 1.46501 * 109.47145 * 240.00039 * 2 1 3 5 5 C 1.34779 * 119.99739 * 85.00076 * 4 2 1 6 6 O 1.21687 * 120.00678 * 359.97438 * 5 4 2 7 7 C 1.46663 * 119.99756 * 180.02562 * 5 4 2 8 8 C 1.36538 * 125.98719 * 179.71287 * 7 5 4 9 9 C 1.40368 * 106.70452 * 179.90475 * 8 7 5 10 10 C 1.35131 * 107.11669 * 0.35570 * 9 8 7 11 11 O 1.33931 * 108.76550 * 359.77731 * 10 9 8 12 12 C 1.50697 * 109.47230 * 119.99672 * 2 1 3 13 13 O 1.21283 * 119.99974 * 120.00048 * 12 2 1 14 14 N 1.34774 * 120.00345 * 300.00326 * 12 2 1 15 15 C 1.47889 * 134.34502 * 179.97438 * 14 12 2 16 16 C 1.52374 * 85.59061 * 156.55754 * 15 14 12 17 17 C 1.47894 * 134.33987 * 0.06152 * 14 12 2 18 18 C 1.53656 * 116.38986 * 141.35925 * 16 15 14 19 19 C 1.54597 * 102.73161 * 95.48609 * 18 16 15 20 20 N 1.47136 * 107.36670 * 20.75459 * 19 18 16 21 21 C 1.36938 * 125.58996 * 180.66450 * 20 19 18 22 22 H 1.08002 * 119.99889 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00054 * 0.02562 * 21 20 19 24 24 N 1.31624 * 119.99551 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00171 * 179.97438 * 23 21 20 26 26 H 1.48489 * 109.47031 * 60.00247 * 25 23 21 27 27 H 1.48498 * 109.46961 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47001 * 299.99870 * 25 23 21 29 29 C 1.47729 * 108.82430 * 0.92790 * 20 19 18 30 30 H 1.08998 * 109.46971 * 300.00109 * 1 2 3 31 31 H 1.09008 * 109.47166 * 59.99980 * 1 2 3 32 32 H 1.08998 * 109.46854 * 179.97438 * 1 2 3 33 33 H 0.96993 * 120.00057 * 264.99456 * 4 2 1 34 34 H 1.07998 * 126.64640 * 0.03827 * 8 7 5 35 35 H 1.08006 * 126.44073 * 180.14837 * 9 8 7 36 36 H 1.08003 * 125.61422 * 179.77545 * 10 9 8 37 37 H 1.09000 * 113.85076 * 42.39173 * 15 14 12 38 38 H 1.09001 * 113.85367 * 270.72416 * 15 14 12 39 39 H 1.08995 * 113.85635 * 89.27448 * 17 14 12 40 40 H 1.09003 * 113.85124 * 317.60763 * 17 14 12 41 41 H 1.08999 * 110.75504 * 337.17811 * 18 16 15 42 42 H 1.08994 * 110.91686 * 213.87072 * 18 16 15 43 43 H 1.09005 * 109.86535 * 261.31083 * 19 18 16 44 44 H 1.08999 * 109.98373 * 140.26332 * 19 18 16 45 45 H 0.97006 * 119.99721 * 180.02562 * 24 23 21 46 46 H 1.09007 * 110.39933 * 96.33789 * 29 20 19 47 47 H 1.08995 * 110.40116 * 218.74649 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8572 1.1624 -2.4120 7 6 2.6354 -0.7097 -3.5548 8 6 2.8068 -0.1521 -4.7893 9 6 3.2902 -1.1689 -5.6276 10 6 3.3839 -2.2903 -4.8794 11 8 2.9885 -2.0096 -3.6310 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.0113 -0.6813 3.8360 16 6 1.7294 0.7649 4.2243 17 6 0.9014 0.8869 2.9508 18 6 0.9814 0.9830 5.5487 19 6 2.1308 1.2332 6.5519 20 7 3.3090 1.6493 5.7750 21 6 4.5393 1.9527 6.2941 22 1 5.3440 2.2497 5.6378 23 6 4.7523 1.8786 7.6638 24 7 3.7717 1.5161 8.4635 25 14 6.4308 2.2917 8.3718 26 1 6.7808 3.6937 8.0298 27 1 6.3973 2.1354 9.8482 28 1 7.4486 1.3738 7.8003 29 6 2.9454 1.6923 4.3438 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1526 34 1 2.6107 0.8731 -5.0665 35 1 3.5374 -1.0738 -6.6747 36 1 3.7219 -3.2542 -5.2304 37 1 3.0479 -0.9837 3.9849 38 1 1.2948 -1.3947 4.2430 39 1 -0.1543 0.6529 3.0873 40 1 1.0667 1.8158 2.4048 41 1 0.4155 0.0930 5.8238 42 1 0.3264 1.8519 5.4871 43 1 2.3521 0.3161 7.0979 44 1 1.8505 2.0216 7.2505 45 1 3.9203 1.4646 9.4207 46 1 2.6794 2.7076 4.0497 47 1 3.7675 1.3216 3.7317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148803928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:37 Heat of formation + Delta-G solvation = -5.378175 kcal Electronic energy + Delta-G solvation = -30259.855606 eV Core-core repulsion = 26024.942516 eV Total energy + Delta-G solvation = -4234.913090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.67457 -42.01110 -40.85739 -39.56603 -37.28627 -36.25983 -34.19469 -34.06160 -32.69656 -31.32445 -30.52112 -29.63605 -27.67683 -27.31405 -26.03834 -25.20533 -23.60525 -22.71461 -22.11926 -21.43720 -20.74596 -19.82964 -19.49396 -18.79600 -17.95500 -17.81799 -17.40656 -17.14940 -16.86865 -16.69993 -16.37936 -15.92898 -15.81835 -15.57069 -15.16853 -14.99719 -14.28668 -14.21795 -14.17120 -13.99346 -13.93262 -13.71886 -13.58451 -13.47941 -13.37302 -13.17911 -12.88963 -12.78972 -12.69902 -12.42546 -12.07764 -11.94185 -11.75723 -11.66709 -11.60233 -11.27227 -11.07148 -10.88435 -10.67374 -10.46205 -9.79379 -9.69714 -8.87477 -7.84958 -5.19276 -0.02956 1.34238 1.38792 1.44283 1.44523 1.46812 1.53018 1.77055 2.02039 2.16291 2.48447 3.11529 3.28640 3.41333 3.62390 3.65884 3.76954 3.93837 3.94059 4.01375 4.09051 4.11223 4.19183 4.34259 4.53932 4.57150 4.60298 4.66500 4.68633 4.74654 4.80131 4.83193 4.88762 4.93105 4.99830 5.06596 5.10478 5.12361 5.16133 5.25837 5.37967 5.45152 5.74845 5.79451 5.83157 6.22242 6.25644 6.58138 6.80986 6.91652 7.12550 7.79179 8.41899 9.24341 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.002128 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.165369 B =13155.062688 C =13927.628832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.114 0.886 4 N -0.701 5.701 5 C 0.607 3.393 6 O -0.550 6.550 7 C -0.115 4.115 8 C -0.119 4.119 9 C -0.233 4.233 10 C 0.009 3.991 11 O -0.176 6.176 12 C 0.529 3.471 13 O -0.583 6.583 14 N -0.633 5.633 15 C 0.128 3.872 16 C -0.098 4.098 17 C 0.127 3.873 18 C -0.110 4.110 19 C 0.182 3.818 20 N -0.627 5.627 21 C -0.243 4.243 22 H 0.074 0.926 23 C -0.063 4.063 24 N -0.946 5.946 25 Si 0.974 3.026 26 H -0.277 1.277 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.157 3.843 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.415 0.585 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.247 0.753 46 H 0.037 0.963 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 -6.670 -25.862 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 H 0.132 0.868 4 N -0.353 5.353 5 C 0.395 3.605 6 O -0.430 6.430 7 C -0.166 4.166 8 C -0.139 4.139 9 C -0.252 4.252 10 C -0.060 4.060 11 O -0.071 6.071 12 C 0.319 3.681 13 O -0.464 6.464 14 N -0.366 5.366 15 C 0.006 3.994 16 C -0.100 4.100 17 C 0.006 3.994 18 C -0.148 4.148 19 C 0.057 3.943 20 N -0.354 5.354 21 C -0.372 4.372 22 H 0.092 0.908 23 C -0.257 4.257 24 N -0.595 5.595 25 Si 0.802 3.198 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.032 3.968 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.252 0.748 34 H 0.181 0.819 35 H 0.203 0.797 36 H 0.269 0.731 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.321 -6.604 -25.652 28.429 hybrid contribution 1.618 -0.155 0.834 1.827 sum -8.703 -6.759 -24.818 27.155 Atomic orbital electron populations 1.22128 0.90013 1.03823 1.04922 1.20794 0.97631 0.97318 0.81669 0.86819 1.45684 1.66308 1.15082 1.08252 1.16687 0.76988 0.85369 0.81430 1.90855 1.52370 1.15182 1.84641 1.21778 1.14121 0.83718 0.97026 1.22288 0.98585 1.02026 0.91049 1.22249 1.07709 0.92091 1.03112 1.25421 0.98142 1.02537 0.79889 1.84092 1.64142 1.25792 1.33117 1.20510 0.79815 0.83654 0.84159 1.90685 1.40624 1.28656 1.86428 1.50148 1.51104 1.31449 1.03923 1.23016 1.01280 0.96905 0.78225 1.22298 0.96751 0.94901 0.96064 1.23429 0.97117 0.89356 0.89467 1.22513 0.96707 1.03195 0.92394 1.21026 0.84985 0.96424 0.91885 1.44842 1.08570 1.79896 1.02057 1.19326 0.88370 1.38371 0.91146 0.90840 1.25569 1.01232 1.02403 0.96447 1.70163 1.31877 1.54749 1.02732 0.85227 0.79544 0.78158 0.76861 1.20349 1.21777 1.20834 1.21200 0.94032 0.96330 0.85276 0.88310 0.90696 0.91349 0.74775 0.81884 0.79676 0.73082 0.93176 0.87126 0.84674 0.87654 0.88898 0.89013 0.97347 0.97355 0.94389 0.94522 0.95959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.36 71.98 0.67 -1.72 16 2 C 0.13 2.99 2.81 44.24 0.12 3.12 16 3 H 0.11 2.65 7.58 -2.39 -0.02 2.63 16 4 N -0.70 -16.64 4.95 -450.09 -2.23 -18.87 16 5 C 0.61 15.31 7.75 86.44 0.67 15.98 16 6 O -0.55 -16.25 16.53 -4.31 -0.07 -16.32 16 7 C -0.11 -2.49 7.13 24.07 0.17 -2.32 16 8 C -0.12 -2.13 10.62 22.39 0.24 -1.89 16 9 C -0.23 -2.70 10.87 22.07 0.24 -2.46 16 10 C 0.01 0.10 12.08 67.10 0.81 0.91 16 11 O -0.18 -3.24 10.40 -5.05 -0.05 -3.29 16 12 C 0.53 14.72 7.45 87.66 0.65 15.38 16 13 O -0.58 -20.78 16.56 -3.04 -0.05 -20.83 16 14 N -0.63 -15.96 3.58 -863.57 -3.09 -19.05 16 15 C 0.13 3.71 8.14 85.91 0.70 4.41 16 16 C -0.10 -2.80 0.99 -52.15 -0.05 -2.85 16 17 C 0.13 2.35 6.27 85.91 0.54 2.89 16 18 C -0.11 -3.26 6.36 31.36 0.20 -3.06 16 19 C 0.18 8.42 5.39 86.80 0.47 8.89 16 20 N -0.63 -31.54 3.41 -693.33 -2.36 -33.90 16 21 C -0.24 -13.76 10.28 84.03 0.86 -12.90 16 22 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 23 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 24 N -0.95 -56.52 10.30 21.65 0.22 -56.30 16 25 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 28 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 29 C 0.16 6.09 6.63 86.28 0.57 6.66 16 30 H 0.10 1.13 6.09 -2.39 -0.01 1.12 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.41 9.87 7.55 -92.71 -0.70 9.17 16 34 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.25 0.18 8.06 -2.91 -0.02 0.16 16 37 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16 38 H 0.11 2.68 8.04 -2.39 -0.02 2.66 16 39 H 0.14 1.47 7.92 -2.39 -0.02 1.45 16 40 H 0.11 1.64 8.12 -2.39 -0.02 1.62 16 41 H 0.09 2.29 7.99 -2.39 -0.02 2.27 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.01 0.44 7.40 -2.38 -0.02 0.42 16 44 H 0.01 0.43 7.47 -2.39 -0.02 0.42 16 45 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 46 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 Total: -1.00 -80.10 391.46 2.03 -78.07 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.30 Total: 14.12 kcal Atomic # 6 Polarization: 20.55 SS G_CDS: 7.34 Total: 27.89 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -7.46 Total: -128.11 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.17 Total: -40.44 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -80.10 2.03 -78.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148803928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.692 kcal (2) G-P(sol) polarization free energy of solvation -80.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds