Wall clock time and date at job start Wed Apr 1 2020 05:13:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.47196 * 2 1
4 4 N 1.46501 * 109.47145 * 240.00039 * 2 1 3
5 5 C 1.34779 * 119.99739 * 85.00076 * 4 2 1
6 6 O 1.21687 * 120.00678 * 359.97438 * 5 4 2
7 7 C 1.46663 * 119.99756 * 180.02562 * 5 4 2
8 8 C 1.36538 * 125.98719 * 179.71287 * 7 5 4
9 9 C 1.40368 * 106.70452 * 179.90475 * 8 7 5
10 10 C 1.35131 * 107.11669 * 0.35570 * 9 8 7
11 11 O 1.33931 * 108.76550 * 359.77731 * 10 9 8
12 12 C 1.50697 * 109.47230 * 119.99672 * 2 1 3
13 13 O 1.21283 * 119.99974 * 120.00048 * 12 2 1
14 14 N 1.34774 * 120.00345 * 300.00326 * 12 2 1
15 15 C 1.47889 * 134.34502 * 179.97438 * 14 12 2
16 16 C 1.52374 * 85.59061 * 156.55754 * 15 14 12
17 17 C 1.47894 * 134.33987 * 0.06152 * 14 12 2
18 18 C 1.53656 * 116.38986 * 141.35925 * 16 15 14
19 19 C 1.54597 * 102.73161 * 95.48609 * 18 16 15
20 20 N 1.47136 * 107.36670 * 20.75459 * 19 18 16
21 21 C 1.36938 * 125.58996 * 180.66450 * 20 19 18
22 22 H 1.08002 * 119.99889 * 180.02562 * 21 20 19
23 23 C 1.38811 * 120.00054 * 0.02562 * 21 20 19
24 24 N 1.31624 * 119.99551 * 0.02562 * 23 21 20
25 25 Si 1.86800 * 120.00171 * 179.97438 * 23 21 20
26 26 H 1.48489 * 109.47031 * 60.00247 * 25 23 21
27 27 H 1.48498 * 109.46961 * 180.02562 * 25 23 21
28 28 H 1.48500 * 109.47001 * 299.99870 * 25 23 21
29 29 C 1.47729 * 108.82430 * 0.92790 * 20 19 18
30 30 H 1.08998 * 109.46971 * 300.00109 * 1 2 3
31 31 H 1.09008 * 109.47166 * 59.99980 * 1 2 3
32 32 H 1.08998 * 109.46854 * 179.97438 * 1 2 3
33 33 H 0.96993 * 120.00057 * 264.99456 * 4 2 1
34 34 H 1.07998 * 126.64640 * 0.03827 * 8 7 5
35 35 H 1.08006 * 126.44073 * 180.14837 * 9 8 7
36 36 H 1.08003 * 125.61422 * 179.77545 * 10 9 8
37 37 H 1.09000 * 113.85076 * 42.39173 * 15 14 12
38 38 H 1.09001 * 113.85367 * 270.72416 * 15 14 12
39 39 H 1.08995 * 113.85635 * 89.27448 * 17 14 12
40 40 H 1.09003 * 113.85124 * 317.60763 * 17 14 12
41 41 H 1.08999 * 110.75504 * 337.17811 * 18 16 15
42 42 H 1.08994 * 110.91686 * 213.87072 * 18 16 15
43 43 H 1.09005 * 109.86535 * 261.31083 * 19 18 16
44 44 H 1.08999 * 109.98373 * 140.26332 * 19 18 16
45 45 H 0.97006 * 119.99721 * 180.02562 * 24 23 21
46 46 H 1.09007 * 110.39933 * 96.33789 * 29 20 19
47 47 H 1.08995 * 110.40116 * 218.74649 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1471 -0.0182 -2.3571
6 8 1.8572 1.1624 -2.4120
7 6 2.6354 -0.7097 -3.5548
8 6 2.8068 -0.1521 -4.7893
9 6 3.2902 -1.1689 -5.6276
10 6 3.3839 -2.2903 -4.8794
11 8 2.9885 -2.0096 -3.6310
12 6 2.0323 -0.7103 1.2305
13 8 2.7296 -1.6964 1.1192
14 7 1.7068 -0.2499 2.4546
15 6 2.0113 -0.6813 3.8360
16 6 1.7294 0.7649 4.2243
17 6 0.9014 0.8869 2.9508
18 6 0.9814 0.9830 5.5487
19 6 2.1308 1.2332 6.5519
20 7 3.3090 1.6493 5.7750
21 6 4.5393 1.9527 6.2941
22 1 5.3440 2.2497 5.6378
23 6 4.7523 1.8786 7.6638
24 7 3.7717 1.5161 8.4635
25 14 6.4308 2.2917 8.3718
26 1 6.7808 3.6937 8.0298
27 1 6.3973 2.1354 9.8482
28 1 7.4486 1.3738 7.8003
29 6 2.9454 1.6923 4.3438
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 2.2491 -1.6317 -1.1526
34 1 2.6107 0.8731 -5.0665
35 1 3.5374 -1.0738 -6.6747
36 1 3.7219 -3.2542 -5.2304
37 1 3.0479 -0.9837 3.9849
38 1 1.2948 -1.3947 4.2430
39 1 -0.1543 0.6529 3.0873
40 1 1.0667 1.8158 2.4048
41 1 0.4155 0.0930 5.8238
42 1 0.3264 1.8519 5.4871
43 1 2.3521 0.3161 7.0979
44 1 1.8505 2.0216 7.2505
45 1 3.9203 1.4646 9.4207
46 1 2.6794 2.7076 4.0497
47 1 3.7675 1.3216 3.7317
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001148803928.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:13:37
Heat of formation + Delta-G solvation = -5.378175 kcal
Electronic energy + Delta-G solvation = -30259.855606 eV
Core-core repulsion = 26024.942516 eV
Total energy + Delta-G solvation = -4234.913090 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-43.67457 -42.01110 -40.85739 -39.56603 -37.28627 -36.25983 -34.19469 -34.06160
-32.69656 -31.32445 -30.52112 -29.63605 -27.67683 -27.31405 -26.03834 -25.20533
-23.60525 -22.71461 -22.11926 -21.43720 -20.74596 -19.82964 -19.49396 -18.79600
-17.95500 -17.81799 -17.40656 -17.14940 -16.86865 -16.69993 -16.37936 -15.92898
-15.81835 -15.57069 -15.16853 -14.99719 -14.28668 -14.21795 -14.17120 -13.99346
-13.93262 -13.71886 -13.58451 -13.47941 -13.37302 -13.17911 -12.88963 -12.78972
-12.69902 -12.42546 -12.07764 -11.94185 -11.75723 -11.66709 -11.60233 -11.27227
-11.07148 -10.88435 -10.67374 -10.46205 -9.79379 -9.69714 -8.87477 -7.84958
-5.19276 -0.02956 1.34238 1.38792 1.44283 1.44523 1.46812 1.53018
1.77055 2.02039 2.16291 2.48447 3.11529 3.28640 3.41333 3.62390
3.65884 3.76954 3.93837 3.94059 4.01375 4.09051 4.11223 4.19183
4.34259 4.53932 4.57150 4.60298 4.66500 4.68633 4.74654 4.80131
4.83193 4.88762 4.93105 4.99830 5.06596 5.10478 5.12361 5.16133
5.25837 5.37967 5.45152 5.74845 5.79451 5.83157 6.22242 6.25644
6.58138 6.80986 6.91652 7.12550 7.79179 8.41899 9.24341
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.017671 B = 0.002128 C = 0.002010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1584.165369 B =13155.062688 C =13927.628832
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.134 3.866
3 H 0.114 0.886
4 N -0.701 5.701
5 C 0.607 3.393
6 O -0.550 6.550
7 C -0.115 4.115
8 C -0.119 4.119
9 C -0.233 4.233
10 C 0.009 3.991
11 O -0.176 6.176
12 C 0.529 3.471
13 O -0.583 6.583
14 N -0.633 5.633
15 C 0.128 3.872
16 C -0.098 4.098
17 C 0.127 3.873
18 C -0.110 4.110
19 C 0.182 3.818
20 N -0.627 5.627
21 C -0.243 4.243
22 H 0.074 0.926
23 C -0.063 4.063
24 N -0.946 5.946
25 Si 0.974 3.026
26 H -0.277 1.277
27 H -0.292 1.292
28 H -0.282 1.282
29 C 0.157 3.843
30 H 0.098 0.902
31 H 0.074 0.926
32 H 0.067 0.933
33 H 0.415 0.585
34 H 0.164 0.836
35 H 0.186 0.814
36 H 0.253 0.747
37 H 0.050 0.950
38 H 0.111 0.889
39 H 0.136 0.864
40 H 0.105 0.895
41 H 0.093 0.907
42 H 0.091 0.909
43 H 0.008 0.992
44 H 0.008 0.992
45 H 0.247 0.753
46 H 0.037 0.963
47 H 0.022 0.978
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.608 -6.670 -25.862 28.738
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.026 3.974
3 H 0.132 0.868
4 N -0.353 5.353
5 C 0.395 3.605
6 O -0.430 6.430
7 C -0.166 4.166
8 C -0.139 4.139
9 C -0.252 4.252
10 C -0.060 4.060
11 O -0.071 6.071
12 C 0.319 3.681
13 O -0.464 6.464
14 N -0.366 5.366
15 C 0.006 3.994
16 C -0.100 4.100
17 C 0.006 3.994
18 C -0.148 4.148
19 C 0.057 3.943
20 N -0.354 5.354
21 C -0.372 4.372
22 H 0.092 0.908
23 C -0.257 4.257
24 N -0.595 5.595
25 Si 0.802 3.198
26 H -0.203 1.203
27 H -0.218 1.218
28 H -0.208 1.208
29 C 0.032 3.968
30 H 0.117 0.883
31 H 0.093 0.907
32 H 0.087 0.913
33 H 0.252 0.748
34 H 0.181 0.819
35 H 0.203 0.797
36 H 0.269 0.731
37 H 0.068 0.932
38 H 0.129 0.871
39 H 0.153 0.847
40 H 0.123 0.877
41 H 0.111 0.889
42 H 0.110 0.890
43 H 0.027 0.973
44 H 0.026 0.974
45 H 0.056 0.944
46 H 0.055 0.945
47 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges -10.321 -6.604 -25.652 28.429
hybrid contribution 1.618 -0.155 0.834 1.827
sum -8.703 -6.759 -24.818 27.155
Atomic orbital electron populations
1.22128 0.90013 1.03823 1.04922 1.20794 0.97631 0.97318 0.81669
0.86819 1.45684 1.66308 1.15082 1.08252 1.16687 0.76988 0.85369
0.81430 1.90855 1.52370 1.15182 1.84641 1.21778 1.14121 0.83718
0.97026 1.22288 0.98585 1.02026 0.91049 1.22249 1.07709 0.92091
1.03112 1.25421 0.98142 1.02537 0.79889 1.84092 1.64142 1.25792
1.33117 1.20510 0.79815 0.83654 0.84159 1.90685 1.40624 1.28656
1.86428 1.50148 1.51104 1.31449 1.03923 1.23016 1.01280 0.96905
0.78225 1.22298 0.96751 0.94901 0.96064 1.23429 0.97117 0.89356
0.89467 1.22513 0.96707 1.03195 0.92394 1.21026 0.84985 0.96424
0.91885 1.44842 1.08570 1.79896 1.02057 1.19326 0.88370 1.38371
0.91146 0.90840 1.25569 1.01232 1.02403 0.96447 1.70163 1.31877
1.54749 1.02732 0.85227 0.79544 0.78158 0.76861 1.20349 1.21777
1.20834 1.21200 0.94032 0.96330 0.85276 0.88310 0.90696 0.91349
0.74775 0.81884 0.79676 0.73082 0.93176 0.87126 0.84674 0.87654
0.88898 0.89013 0.97347 0.97355 0.94389 0.94522 0.95959
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.39 9.36 71.98 0.67 -1.72 16
2 C 0.13 2.99 2.81 44.24 0.12 3.12 16
3 H 0.11 2.65 7.58 -2.39 -0.02 2.63 16
4 N -0.70 -16.64 4.95 -450.09 -2.23 -18.87 16
5 C 0.61 15.31 7.75 86.44 0.67 15.98 16
6 O -0.55 -16.25 16.53 -4.31 -0.07 -16.32 16
7 C -0.11 -2.49 7.13 24.07 0.17 -2.32 16
8 C -0.12 -2.13 10.62 22.39 0.24 -1.89 16
9 C -0.23 -2.70 10.87 22.07 0.24 -2.46 16
10 C 0.01 0.10 12.08 67.10 0.81 0.91 16
11 O -0.18 -3.24 10.40 -5.05 -0.05 -3.29 16
12 C 0.53 14.72 7.45 87.66 0.65 15.38 16
13 O -0.58 -20.78 16.56 -3.04 -0.05 -20.83 16
14 N -0.63 -15.96 3.58 -863.57 -3.09 -19.05 16
15 C 0.13 3.71 8.14 85.91 0.70 4.41 16
16 C -0.10 -2.80 0.99 -52.15 -0.05 -2.85 16
17 C 0.13 2.35 6.27 85.91 0.54 2.89 16
18 C -0.11 -3.26 6.36 31.36 0.20 -3.06 16
19 C 0.18 8.42 5.39 86.80 0.47 8.89 16
20 N -0.63 -31.54 3.41 -693.33 -2.36 -33.90 16
21 C -0.24 -13.76 10.28 84.03 0.86 -12.90 16
22 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16
23 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16
24 N -0.95 -56.52 10.30 21.65 0.22 -56.30 16
25 Si 0.97 46.44 29.55 68.60 2.03 48.47 16
26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
27 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16
28 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
29 C 0.16 6.09 6.63 86.28 0.57 6.66 16
30 H 0.10 1.13 6.09 -2.39 -0.01 1.12 16
31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16
32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
33 H 0.41 9.87 7.55 -92.71 -0.70 9.17 16
34 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16
35 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16
36 H 0.25 0.18 8.06 -2.91 -0.02 0.16 16
37 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16
38 H 0.11 2.68 8.04 -2.39 -0.02 2.66 16
39 H 0.14 1.47 7.92 -2.39 -0.02 1.45 16
40 H 0.11 1.64 8.12 -2.39 -0.02 1.62 16
41 H 0.09 2.29 7.99 -2.39 -0.02 2.27 16
42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16
43 H 0.01 0.44 7.40 -2.38 -0.02 0.42 16
44 H 0.01 0.43 7.47 -2.39 -0.02 0.42 16
45 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16
46 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16
47 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16
Total: -1.00 -80.10 391.46 2.03 -78.07
By element:
Atomic # 1 Polarization: 13.83 SS G_CDS: 0.30 Total: 14.12 kcal
Atomic # 6 Polarization: 20.55 SS G_CDS: 7.34 Total: 27.89 kcal
Atomic # 7 Polarization: -120.65 SS G_CDS: -7.46 Total: -128.11 kcal
Atomic # 8 Polarization: -40.27 SS G_CDS: -0.17 Total: -40.44 kcal
Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal
Total: -80.10 2.03 -78.07 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001148803928.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.692 kcal
(2) G-P(sol) polarization free energy of solvation -80.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds