Wall clock time and date at job start Wed Apr 1 2020 05:17:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 109.47042 * 2 1
4 4 N 1.46500 * 109.46810 * 120.00038 * 2 1 3
5 5 C 1.34777 * 119.99863 * 274.99823 * 4 2 1
6 6 O 1.21618 * 120.00149 * 0.02562 * 5 4 2
7 7 C 1.47383 * 120.00223 * 180.02562 * 5 4 2
8 8 C 1.47022 * 127.19203 * 179.71073 * 7 5 4
9 9 C 1.34178 * 105.95153 * 179.83106 * 8 7 5
10 10 O 1.34216 * 109.12285 * 0.43808 * 9 8 7
11 11 C 1.33655 * 110.90989 * 359.70595 * 10 9 8
12 12 C 1.50703 * 109.47557 * 239.99912 * 2 1 3
13 13 O 1.21284 * 120.00108 * 240.00609 * 12 2 1
14 14 N 1.34770 * 119.99793 * 59.71955 * 12 2 1
15 15 C 1.47291 * 136.54435 * 359.91702 * 14 12 2
16 16 C 1.54392 * 87.49332 * 151.44745 * 15 14 12
17 17 H 1.09000 * 114.91685 * 141.75789 * 16 15 14
18 18 C 1.53063 * 112.46497 * 274.16229 * 16 15 14
19 19 C 1.53151 * 109.21045 * 142.79076 * 18 16 15
20 20 N 1.46536 * 108.24847 * 301.58033 * 19 18 16
21 21 C 1.36938 * 119.74009 * 236.44471 * 20 19 18
22 22 H 1.08008 * 119.99836 * 26.56096 * 21 20 19
23 23 C 1.38808 * 120.00384 * 206.56239 * 21 20 19
24 24 N 1.31615 * 119.99768 * 12.78871 * 23 21 20
25 25 Si 1.86798 * 120.00125 * 192.79557 * 23 21 20
26 26 H 1.48499 * 109.47627 * 59.99674 * 25 23 21
27 27 H 1.48505 * 109.47193 * 180.02562 * 25 23 21
28 28 H 1.48502 * 109.47099 * 299.99405 * 25 23 21
29 29 C 1.43238 * 120.57865 * 55.55907 * 20 19 18
30 30 C 1.46469 * 136.54303 * 180.27268 * 14 12 2
31 31 H 1.09000 * 111.43848 * 96.36408 * 30 14 12
32 32 H 1.09001 * 109.46998 * 60.00853 * 1 2 3
33 33 H 1.09003 * 109.46937 * 179.97438 * 1 2 3
34 34 H 1.08996 * 109.47806 * 299.99951 * 1 2 3
35 35 H 0.97001 * 120.00541 * 95.00163 * 4 2 1
36 36 H 1.07996 * 127.02663 * 0.02562 * 8 7 5
37 37 H 1.08001 * 125.44172 * 180.14670 * 9 8 7
38 38 H 1.07996 * 125.79963 * 179.97438 * 11 10 9
39 39 H 1.09007 * 113.52612 * 266.06645 * 15 14 12
40 40 H 1.08994 * 113.53099 * 36.69374 * 15 14 12
41 41 H 1.08997 * 109.51247 * 262.70484 * 18 16 15
42 42 H 1.08998 * 109.51616 * 22.87221 * 18 16 15
43 43 H 1.09002 * 109.71207 * 61.27076 * 19 18 16
44 44 H 1.09004 * 109.70693 * 181.89211 * 19 18 16
45 45 H 0.97008 * 120.00093 * 180.02562 * 24 23 21
46 46 H 1.08997 * 108.84011 * 199.45760 * 29 20 19
47 47 H 1.09001 * 107.23576 * 82.08391 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0183 2.3571
6 8 1.8573 1.1617 2.4119
7 6 2.6387 -0.7128 3.5604
8 6 2.8443 -0.1368 4.8974
9 6 3.2957 -1.1400 5.6657
10 8 3.3903 -2.2541 4.9232
11 6 3.0038 -2.0230 3.6649
12 6 2.0325 -0.7104 -1.2304
13 8 2.7297 -1.6966 -1.1191
14 7 1.7023 -0.2533 -2.4545
15 6 0.9058 0.8583 -3.0017
16 6 1.8325 0.8252 -4.2361
17 1 1.3339 0.9998 -5.1895
18 6 3.0998 1.6606 -4.0386
19 6 4.2812 0.9492 -4.7047
20 7 4.4149 -0.3802 -4.1029
21 6 5.6016 -0.7494 -3.5280
22 1 6.2658 0.0033 -3.1294
23 6 5.9510 -2.0909 -3.4574
24 7 5.2801 -2.9832 -4.1544
25 14 7.3733 -2.6299 -2.3729
26 1 7.0896 -2.2584 -0.9634
27 1 7.5420 -4.1019 -2.4731
28 1 8.6195 -1.9578 -2.8207
29 6 3.3090 -1.2905 -4.0938
30 6 1.9682 -0.6411 -3.8416
31 1 1.1554 -1.2416 -4.2502
32 1 -0.3633 0.5137 -0.8901
33 1 -0.3633 -1.0277 -0.0005
34 1 -0.3634 0.5138 0.8899
35 1 2.2490 -1.6318 1.1527
36 1 2.6652 0.8842 5.2002
37 1 3.5476 -1.0622 6.7130
38 1 2.9843 -2.7499 2.8664
39 1 -0.1258 0.5859 -3.2248
40 1 0.9843 1.7772 -2.4207
41 1 2.9632 2.6422 -4.4923
42 1 3.2979 1.7754 -2.9729
43 1 4.0959 0.8515 -5.7744
44 1 5.1947 1.5207 -4.5401
45 1 5.5240 -3.9208 -4.1048
46 1 3.4821 -2.0471 -3.3286
47 1 3.2848 -1.7790 -5.0680
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001221571259.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:17:53
Heat of formation + Delta-G solvation = 21.807513 kcal
Electronic energy + Delta-G solvation = -31726.384340 eV
Core-core repulsion = 27492.650110 eV
Total energy + Delta-G solvation = -4233.734230 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.70005 -40.74337 -39.56724 -37.81432 -35.40758 -34.81723 -33.12310 -32.25415
-31.30606 -30.19934 -29.69178 -28.53016 -26.98820 -24.93513 -23.90476 -23.51490
-22.42659 -21.63810 -21.01705 -20.16602 -19.92208 -18.78494 -17.76243 -16.93227
-16.44579 -16.31305 -16.28356 -15.81545 -15.56220 -15.20707 -14.91340 -14.61989
-14.19825 -13.90219 -13.72374 -13.54340 -13.34733 -13.20351 -13.08529 -12.77327
-12.66484 -12.56088 -12.33603 -12.17508 -11.97648 -11.63770 -11.43032 -11.12679
-10.69419 -10.66416 -10.49285 -10.20677 -10.11255 -9.99245 -9.93648 -9.81160
-9.59996 -9.28316 -9.01204 -8.91810 -8.31202 -8.21316 -6.56712 -5.67362
-3.12410 1.19914 1.89831 2.70311 2.84597 3.02391 3.31246 3.40241
3.45520 3.50152 3.53704 4.41785 4.49588 4.52770 4.57604 4.62890
4.89763 5.04039 5.10090 5.19968 5.30560 5.41826 5.44919 5.46950
5.50250 5.54153 5.60182 5.67408 5.70642 5.75654 5.87658 5.97488
6.06640 6.08508 6.12108 6.26505 6.34052 6.39352 6.49793 6.58523
6.75124 6.77721 6.99383 7.46732 7.50246 7.76019 7.92079 8.13548
8.24129 8.56916 8.59540 9.38152 10.00859 10.46197 11.39771
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.009731 B = 0.003975 C = 0.003090
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2876.846861 B = 7041.952565 C = 9058.456520
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.133 3.867
3 H 0.110 0.890
4 N -0.706 5.706
5 C 0.592 3.408
6 O -0.541 6.541
7 C -0.235 4.235
8 C -0.164 4.164
9 C -0.044 4.044
10 O -0.174 6.174
11 C 0.028 3.972
12 C 0.538 3.462
13 O -0.515 6.515
14 N -0.627 5.627
15 C 0.093 3.907
16 C -0.114 4.114
17 H 0.092 0.908
18 C -0.115 4.115
19 C 0.147 3.853
20 N -0.580 5.580
21 C -0.256 4.256
22 H 0.060 0.940
23 C 0.014 3.986
24 N -0.903 5.903
25 Si 0.902 3.098
26 H -0.284 1.284
27 H -0.291 1.291
28 H -0.285 1.285
29 C 0.167 3.833
30 C 0.119 3.881
31 H 0.075 0.925
32 H 0.072 0.928
33 H 0.061 0.939
34 H 0.070 0.930
35 H 0.408 0.592
36 H 0.159 0.841
37 H 0.208 0.792
38 H 0.214 0.786
39 H 0.081 0.919
40 H 0.073 0.927
41 H 0.056 0.944
42 H 0.060 0.940
43 H 0.021 0.979
44 H 0.056 0.944
45 H 0.252 0.748
46 H 0.101 0.899
47 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.018 5.595 11.041 17.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.024 3.976
3 H 0.128 0.872
4 N -0.359 5.359
5 C 0.380 3.620
6 O -0.419 6.419
7 C -0.240 4.240
8 C -0.183 4.183
9 C -0.110 4.110
10 O -0.069 6.069
11 C -0.043 4.043
12 C 0.325 3.675
13 O -0.390 6.390
14 N -0.363 5.363
15 C -0.030 4.030
16 C -0.133 4.133
17 H 0.110 0.890
18 C -0.155 4.155
19 C 0.020 3.980
20 N -0.302 5.302
21 C -0.386 4.386
22 H 0.078 0.922
23 C -0.185 4.185
24 N -0.547 5.547
25 Si 0.732 3.268
26 H -0.211 1.211
27 H -0.217 1.217
28 H -0.211 1.211
29 C 0.040 3.960
30 C 0.015 3.985
31 H 0.093 0.907
32 H 0.091 0.909
33 H 0.081 0.919
34 H 0.089 0.911
35 H 0.245 0.755
36 H 0.177 0.823
37 H 0.225 0.775
38 H 0.230 0.770
39 H 0.099 0.901
40 H 0.092 0.908
41 H 0.075 0.925
42 H 0.078 0.922
43 H 0.039 0.961
44 H 0.074 0.926
45 H 0.062 0.938
46 H 0.119 0.881
47 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges -11.638 5.328 11.452 17.175
hybrid contribution 0.631 -0.564 0.512 0.989
sum -11.007 4.764 11.964 16.941
Atomic orbital electron populations
1.22111 0.93120 1.02883 1.03292 1.20665 0.95248 0.98099 0.83564
0.87231 1.45574 1.67258 1.14725 1.08350 1.17204 0.76981 0.86002
0.81796 1.90767 1.50750 1.15304 1.85057 1.21473 1.12161 0.94548
0.95786 1.22762 1.03779 1.00803 0.90985 1.23946 1.05818 0.83453
0.97774 1.83808 1.66376 1.36816 1.19889 1.24598 0.97345 0.96976
0.85341 1.19726 0.80764 0.84470 0.82506 1.90775 1.37019 1.26068
1.85119 1.49352 1.50565 1.31582 1.04817 1.23443 0.95523 0.90247
0.93828 1.22797 0.96656 0.96804 0.97027 0.89009 1.21814 0.95147
0.96936 1.01592 1.20753 0.95105 0.87701 0.94447 1.42835 1.09094
1.12427 1.65837 1.19047 0.96329 0.91491 1.31712 0.92184 1.24955
0.98106 0.96785 0.98621 1.70002 1.42219 1.01267 1.41215 0.86383
0.82093 0.77309 0.81001 1.21066 1.21651 1.21095 1.19748 0.82352
0.92334 1.01612 1.22736 1.01549 0.95918 0.78285 0.90691 0.90909
0.91947 0.91120 0.75533 0.82297 0.77497 0.76989 0.90143 0.90833
0.92527 0.92156 0.96116 0.92566 0.93762 0.88080 0.95565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.83 9.37 37.16 0.35 -1.49 16
2 C 0.13 1.99 2.88 -69.08 -0.20 1.79 16
3 H 0.11 1.74 7.58 -51.93 -0.39 1.35 16
4 N -0.71 -10.40 4.94 -56.02 -0.28 -10.68 16
5 C 0.59 9.08 7.78 -12.54 -0.10 8.98 16
6 O -0.54 -9.70 16.65 5.26 0.09 -9.61 16
7 C -0.24 -3.07 6.31 -103.28 -0.65 -3.72 16
8 C -0.16 -1.83 11.01 -37.45 -0.41 -2.25 16
9 C -0.04 -0.39 12.03 29.30 0.35 -0.04 16
10 O -0.17 -1.84 10.52 7.64 0.08 -1.76 16
11 C 0.03 0.30 11.61 30.07 0.35 0.65 16
12 C 0.54 9.94 7.41 -10.99 -0.08 9.86 16
13 O -0.51 -11.77 15.11 5.55 0.08 -11.69 16
14 N -0.63 -10.61 3.30 -187.47 -0.62 -11.23 16
15 C 0.09 1.15 6.13 -11.37 -0.07 1.08 16
16 C -0.11 -1.65 4.51 -90.14 -0.41 -2.05 16
17 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16
18 C -0.12 -1.88 5.75 -26.62 -0.15 -2.03 16
19 C 0.15 2.99 6.46 -3.94 -0.03 2.97 16
20 N -0.58 -14.64 2.98 -176.79 -0.53 -15.16 16
21 C -0.26 -7.29 9.49 -15.06 -0.14 -7.43 16
22 H 0.06 1.70 7.84 -52.48 -0.41 1.29 16
23 C 0.01 0.41 4.95 -17.43 -0.09 0.32 16
24 N -0.90 -26.98 10.95 55.49 0.61 -26.38 16
25 Si 0.90 23.09 29.57 -169.99 -5.03 18.06 16
26 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16
27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16
28 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16
29 C 0.17 4.04 4.47 -6.72 -0.03 4.01 16
30 C 0.12 2.16 4.07 -77.68 -0.32 1.85 16
31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
32 H 0.07 0.74 6.38 -51.93 -0.33 0.41 16
33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
35 H 0.41 5.69 6.76 -40.82 -0.28 5.41 16
36 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16
37 H 0.21 0.98 8.06 -52.49 -0.42 0.55 16
38 H 0.21 1.77 7.47 -52.49 -0.39 1.38 16
39 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16
40 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16
41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
42 H 0.06 1.09 7.76 -51.93 -0.40 0.69 16
43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
44 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16
45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16
46 H 0.10 2.88 4.99 -51.93 -0.26 2.62 16
47 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16
LS Contribution 383.67 15.07 5.78 5.78
Total: -1.00 -36.52 383.67 -8.08 -44.60
By element:
Atomic # 1 Polarization: 12.21 SS G_CDS: -6.65 Total: 5.56 kcal
Atomic # 6 Polarization: 14.12 SS G_CDS: -1.62 Total: 12.50 kcal
Atomic # 7 Polarization: -62.64 SS G_CDS: -0.81 Total: -63.45 kcal
Atomic # 8 Polarization: -23.30 SS G_CDS: 0.25 Total: -23.05 kcal
Atomic # 14 Polarization: 23.09 SS G_CDS: -5.03 Total: 18.06 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -36.52 -8.08 -44.60 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001221571259.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.407 kcal
(2) G-P(sol) polarization free energy of solvation -36.521 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds