Wall clock time and date at job start Wed Apr 1 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47042 * 2 1 4 4 N 1.46500 * 109.46810 * 120.00038 * 2 1 3 5 5 C 1.34777 * 119.99863 * 274.99823 * 4 2 1 6 6 O 1.21618 * 120.00149 * 0.02562 * 5 4 2 7 7 C 1.47383 * 120.00223 * 180.02562 * 5 4 2 8 8 C 1.47022 * 127.19203 * 179.71073 * 7 5 4 9 9 C 1.34178 * 105.95153 * 179.83106 * 8 7 5 10 10 O 1.34216 * 109.12285 * 0.43808 * 9 8 7 11 11 C 1.33655 * 110.90989 * 359.70595 * 10 9 8 12 12 C 1.50703 * 109.47557 * 239.99912 * 2 1 3 13 13 O 1.21284 * 120.00108 * 240.00609 * 12 2 1 14 14 N 1.34770 * 119.99793 * 59.71955 * 12 2 1 15 15 C 1.47291 * 136.54435 * 359.91702 * 14 12 2 16 16 C 1.54392 * 87.49332 * 151.44745 * 15 14 12 17 17 H 1.09000 * 114.91685 * 141.75789 * 16 15 14 18 18 C 1.53063 * 112.46497 * 274.16229 * 16 15 14 19 19 C 1.53151 * 109.21045 * 142.79076 * 18 16 15 20 20 N 1.46536 * 108.24847 * 301.58033 * 19 18 16 21 21 C 1.36938 * 119.74009 * 236.44471 * 20 19 18 22 22 H 1.08008 * 119.99836 * 26.56096 * 21 20 19 23 23 C 1.38808 * 120.00384 * 206.56239 * 21 20 19 24 24 N 1.31615 * 119.99768 * 12.78871 * 23 21 20 25 25 Si 1.86798 * 120.00125 * 192.79557 * 23 21 20 26 26 H 1.48499 * 109.47627 * 59.99674 * 25 23 21 27 27 H 1.48505 * 109.47193 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47099 * 299.99405 * 25 23 21 29 29 C 1.43238 * 120.57865 * 55.55907 * 20 19 18 30 30 C 1.46469 * 136.54303 * 180.27268 * 14 12 2 31 31 H 1.09000 * 111.43848 * 96.36408 * 30 14 12 32 32 H 1.09001 * 109.46998 * 60.00853 * 1 2 3 33 33 H 1.09003 * 109.46937 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47806 * 299.99951 * 1 2 3 35 35 H 0.97001 * 120.00541 * 95.00163 * 4 2 1 36 36 H 1.07996 * 127.02663 * 0.02562 * 8 7 5 37 37 H 1.08001 * 125.44172 * 180.14670 * 9 8 7 38 38 H 1.07996 * 125.79963 * 179.97438 * 11 10 9 39 39 H 1.09007 * 113.52612 * 266.06645 * 15 14 12 40 40 H 1.08994 * 113.53099 * 36.69374 * 15 14 12 41 41 H 1.08997 * 109.51247 * 262.70484 * 18 16 15 42 42 H 1.08998 * 109.51616 * 22.87221 * 18 16 15 43 43 H 1.09002 * 109.71207 * 61.27076 * 19 18 16 44 44 H 1.09004 * 109.70693 * 181.89211 * 19 18 16 45 45 H 0.97008 * 120.00093 * 180.02562 * 24 23 21 46 46 H 1.08997 * 108.84011 * 199.45760 * 29 20 19 47 47 H 1.09001 * 107.23576 * 82.08391 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8573 1.1617 2.4119 7 6 2.6387 -0.7128 3.5604 8 6 2.8443 -0.1368 4.8974 9 6 3.2957 -1.1400 5.6657 10 8 3.3903 -2.2541 4.9232 11 6 3.0038 -2.0230 3.6649 12 6 2.0325 -0.7104 -1.2304 13 8 2.7297 -1.6966 -1.1191 14 7 1.7023 -0.2533 -2.4545 15 6 0.9058 0.8583 -3.0017 16 6 1.8325 0.8252 -4.2361 17 1 1.3339 0.9998 -5.1895 18 6 3.0998 1.6606 -4.0386 19 6 4.2812 0.9492 -4.7047 20 7 4.4149 -0.3802 -4.1029 21 6 5.6016 -0.7494 -3.5280 22 1 6.2658 0.0033 -3.1294 23 6 5.9510 -2.0909 -3.4574 24 7 5.2801 -2.9832 -4.1544 25 14 7.3733 -2.6299 -2.3729 26 1 7.0896 -2.2584 -0.9634 27 1 7.5420 -4.1019 -2.4731 28 1 8.6195 -1.9578 -2.8207 29 6 3.3090 -1.2905 -4.0938 30 6 1.9682 -0.6411 -3.8416 31 1 1.1554 -1.2416 -4.2502 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6318 1.1527 36 1 2.6652 0.8842 5.2002 37 1 3.5476 -1.0622 6.7130 38 1 2.9843 -2.7499 2.8664 39 1 -0.1258 0.5859 -3.2248 40 1 0.9843 1.7772 -2.4207 41 1 2.9632 2.6422 -4.4923 42 1 3.2979 1.7754 -2.9729 43 1 4.0959 0.8515 -5.7744 44 1 5.1947 1.5207 -4.5401 45 1 5.5240 -3.9208 -4.1048 46 1 3.4821 -2.0471 -3.3286 47 1 3.2848 -1.7790 -5.0680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221571259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:53 Heat of formation + Delta-G solvation = 21.807513 kcal Electronic energy + Delta-G solvation = -31726.384340 eV Core-core repulsion = 27492.650110 eV Total energy + Delta-G solvation = -4233.734230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.70005 -40.74337 -39.56724 -37.81432 -35.40758 -34.81723 -33.12310 -32.25415 -31.30606 -30.19934 -29.69178 -28.53016 -26.98820 -24.93513 -23.90476 -23.51490 -22.42659 -21.63810 -21.01705 -20.16602 -19.92208 -18.78494 -17.76243 -16.93227 -16.44579 -16.31305 -16.28356 -15.81545 -15.56220 -15.20707 -14.91340 -14.61989 -14.19825 -13.90219 -13.72374 -13.54340 -13.34733 -13.20351 -13.08529 -12.77327 -12.66484 -12.56088 -12.33603 -12.17508 -11.97648 -11.63770 -11.43032 -11.12679 -10.69419 -10.66416 -10.49285 -10.20677 -10.11255 -9.99245 -9.93648 -9.81160 -9.59996 -9.28316 -9.01204 -8.91810 -8.31202 -8.21316 -6.56712 -5.67362 -3.12410 1.19914 1.89831 2.70311 2.84597 3.02391 3.31246 3.40241 3.45520 3.50152 3.53704 4.41785 4.49588 4.52770 4.57604 4.62890 4.89763 5.04039 5.10090 5.19968 5.30560 5.41826 5.44919 5.46950 5.50250 5.54153 5.60182 5.67408 5.70642 5.75654 5.87658 5.97488 6.06640 6.08508 6.12108 6.26505 6.34052 6.39352 6.49793 6.58523 6.75124 6.77721 6.99383 7.46732 7.50246 7.76019 7.92079 8.13548 8.24129 8.56916 8.59540 9.38152 10.00859 10.46197 11.39771 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009731 B = 0.003975 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.846861 B = 7041.952565 C = 9058.456520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.133 3.867 3 H 0.110 0.890 4 N -0.706 5.706 5 C 0.592 3.408 6 O -0.541 6.541 7 C -0.235 4.235 8 C -0.164 4.164 9 C -0.044 4.044 10 O -0.174 6.174 11 C 0.028 3.972 12 C 0.538 3.462 13 O -0.515 6.515 14 N -0.627 5.627 15 C 0.093 3.907 16 C -0.114 4.114 17 H 0.092 0.908 18 C -0.115 4.115 19 C 0.147 3.853 20 N -0.580 5.580 21 C -0.256 4.256 22 H 0.060 0.940 23 C 0.014 3.986 24 N -0.903 5.903 25 Si 0.902 3.098 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.167 3.833 30 C 0.119 3.881 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.408 0.592 36 H 0.159 0.841 37 H 0.208 0.792 38 H 0.214 0.786 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.252 0.748 46 H 0.101 0.899 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.018 5.595 11.041 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.128 0.872 4 N -0.359 5.359 5 C 0.380 3.620 6 O -0.419 6.419 7 C -0.240 4.240 8 C -0.183 4.183 9 C -0.110 4.110 10 O -0.069 6.069 11 C -0.043 4.043 12 C 0.325 3.675 13 O -0.390 6.390 14 N -0.363 5.363 15 C -0.030 4.030 16 C -0.133 4.133 17 H 0.110 0.890 18 C -0.155 4.155 19 C 0.020 3.980 20 N -0.302 5.302 21 C -0.386 4.386 22 H 0.078 0.922 23 C -0.185 4.185 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.211 1.211 29 C 0.040 3.960 30 C 0.015 3.985 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.177 0.823 37 H 0.225 0.775 38 H 0.230 0.770 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.119 0.881 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.638 5.328 11.452 17.175 hybrid contribution 0.631 -0.564 0.512 0.989 sum -11.007 4.764 11.964 16.941 Atomic orbital electron populations 1.22111 0.93120 1.02883 1.03292 1.20665 0.95248 0.98099 0.83564 0.87231 1.45574 1.67258 1.14725 1.08350 1.17204 0.76981 0.86002 0.81796 1.90767 1.50750 1.15304 1.85057 1.21473 1.12161 0.94548 0.95786 1.22762 1.03779 1.00803 0.90985 1.23946 1.05818 0.83453 0.97774 1.83808 1.66376 1.36816 1.19889 1.24598 0.97345 0.96976 0.85341 1.19726 0.80764 0.84470 0.82506 1.90775 1.37019 1.26068 1.85119 1.49352 1.50565 1.31582 1.04817 1.23443 0.95523 0.90247 0.93828 1.22797 0.96656 0.96804 0.97027 0.89009 1.21814 0.95147 0.96936 1.01592 1.20753 0.95105 0.87701 0.94447 1.42835 1.09094 1.12427 1.65837 1.19047 0.96329 0.91491 1.31712 0.92184 1.24955 0.98106 0.96785 0.98621 1.70002 1.42219 1.01267 1.41215 0.86383 0.82093 0.77309 0.81001 1.21066 1.21651 1.21095 1.19748 0.82352 0.92334 1.01612 1.22736 1.01549 0.95918 0.78285 0.90691 0.90909 0.91947 0.91120 0.75533 0.82297 0.77497 0.76989 0.90143 0.90833 0.92527 0.92156 0.96116 0.92566 0.93762 0.88080 0.95565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.37 37.16 0.35 -1.49 16 2 C 0.13 1.99 2.88 -69.08 -0.20 1.79 16 3 H 0.11 1.74 7.58 -51.93 -0.39 1.35 16 4 N -0.71 -10.40 4.94 -56.02 -0.28 -10.68 16 5 C 0.59 9.08 7.78 -12.54 -0.10 8.98 16 6 O -0.54 -9.70 16.65 5.26 0.09 -9.61 16 7 C -0.24 -3.07 6.31 -103.28 -0.65 -3.72 16 8 C -0.16 -1.83 11.01 -37.45 -0.41 -2.25 16 9 C -0.04 -0.39 12.03 29.30 0.35 -0.04 16 10 O -0.17 -1.84 10.52 7.64 0.08 -1.76 16 11 C 0.03 0.30 11.61 30.07 0.35 0.65 16 12 C 0.54 9.94 7.41 -10.99 -0.08 9.86 16 13 O -0.51 -11.77 15.11 5.55 0.08 -11.69 16 14 N -0.63 -10.61 3.30 -187.47 -0.62 -11.23 16 15 C 0.09 1.15 6.13 -11.37 -0.07 1.08 16 16 C -0.11 -1.65 4.51 -90.14 -0.41 -2.05 16 17 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.12 -1.88 5.75 -26.62 -0.15 -2.03 16 19 C 0.15 2.99 6.46 -3.94 -0.03 2.97 16 20 N -0.58 -14.64 2.98 -176.79 -0.53 -15.16 16 21 C -0.26 -7.29 9.49 -15.06 -0.14 -7.43 16 22 H 0.06 1.70 7.84 -52.48 -0.41 1.29 16 23 C 0.01 0.41 4.95 -17.43 -0.09 0.32 16 24 N -0.90 -26.98 10.95 55.49 0.61 -26.38 16 25 Si 0.90 23.09 29.57 -169.99 -5.03 18.06 16 26 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.17 4.04 4.47 -6.72 -0.03 4.01 16 30 C 0.12 2.16 4.07 -77.68 -0.32 1.85 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 0.74 6.38 -51.93 -0.33 0.41 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.41 5.69 6.76 -40.82 -0.28 5.41 16 36 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.21 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.21 1.77 7.47 -52.49 -0.39 1.38 16 39 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.09 7.76 -51.93 -0.40 0.69 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.10 2.88 4.99 -51.93 -0.26 2.62 16 47 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -36.52 383.67 -8.08 -44.60 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.65 Total: 5.56 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.62 Total: 12.50 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.81 Total: -63.45 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.25 Total: -23.05 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.03 Total: 18.06 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.52 -8.08 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221571259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.407 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds