Wall clock time and date at job start Wed Apr 1 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47042 * 2 1 4 4 N 1.46500 * 109.46810 * 120.00038 * 2 1 3 5 5 C 1.34777 * 119.99863 * 274.99823 * 4 2 1 6 6 O 1.21618 * 120.00149 * 0.02562 * 5 4 2 7 7 C 1.47383 * 120.00223 * 180.02562 * 5 4 2 8 8 C 1.47022 * 127.19203 * 179.71073 * 7 5 4 9 9 C 1.34178 * 105.95153 * 179.83106 * 8 7 5 10 10 O 1.34216 * 109.12285 * 0.43808 * 9 8 7 11 11 C 1.33655 * 110.90989 * 359.70595 * 10 9 8 12 12 C 1.50703 * 109.47557 * 239.99912 * 2 1 3 13 13 O 1.21284 * 120.00108 * 240.00609 * 12 2 1 14 14 N 1.34770 * 119.99793 * 59.71955 * 12 2 1 15 15 C 1.47291 * 136.54435 * 359.91702 * 14 12 2 16 16 C 1.54392 * 87.49332 * 151.44745 * 15 14 12 17 17 H 1.09000 * 114.91685 * 141.75789 * 16 15 14 18 18 C 1.53063 * 112.46497 * 274.16229 * 16 15 14 19 19 C 1.53151 * 109.21045 * 142.79076 * 18 16 15 20 20 N 1.46536 * 108.24847 * 301.58033 * 19 18 16 21 21 C 1.36938 * 119.74009 * 236.44471 * 20 19 18 22 22 H 1.08008 * 119.99836 * 26.56096 * 21 20 19 23 23 C 1.38808 * 120.00384 * 206.56239 * 21 20 19 24 24 N 1.31615 * 119.99768 * 12.78871 * 23 21 20 25 25 Si 1.86798 * 120.00125 * 192.79557 * 23 21 20 26 26 H 1.48499 * 109.47627 * 59.99674 * 25 23 21 27 27 H 1.48505 * 109.47193 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47099 * 299.99405 * 25 23 21 29 29 C 1.43238 * 120.57865 * 55.55907 * 20 19 18 30 30 C 1.46469 * 136.54303 * 180.27268 * 14 12 2 31 31 H 1.09000 * 111.43848 * 96.36408 * 30 14 12 32 32 H 1.09001 * 109.46998 * 60.00853 * 1 2 3 33 33 H 1.09003 * 109.46937 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47806 * 299.99951 * 1 2 3 35 35 H 0.97001 * 120.00541 * 95.00163 * 4 2 1 36 36 H 1.07996 * 127.02663 * 0.02562 * 8 7 5 37 37 H 1.08001 * 125.44172 * 180.14670 * 9 8 7 38 38 H 1.07996 * 125.79963 * 179.97438 * 11 10 9 39 39 H 1.09007 * 113.52612 * 266.06645 * 15 14 12 40 40 H 1.08994 * 113.53099 * 36.69374 * 15 14 12 41 41 H 1.08997 * 109.51247 * 262.70484 * 18 16 15 42 42 H 1.08998 * 109.51616 * 22.87221 * 18 16 15 43 43 H 1.09002 * 109.71207 * 61.27076 * 19 18 16 44 44 H 1.09004 * 109.70693 * 181.89211 * 19 18 16 45 45 H 0.97008 * 120.00093 * 180.02562 * 24 23 21 46 46 H 1.08997 * 108.84011 * 199.45760 * 29 20 19 47 47 H 1.09001 * 107.23576 * 82.08391 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8573 1.1617 2.4119 7 6 2.6387 -0.7128 3.5604 8 6 2.8443 -0.1368 4.8974 9 6 3.2957 -1.1400 5.6657 10 8 3.3903 -2.2541 4.9232 11 6 3.0038 -2.0230 3.6649 12 6 2.0325 -0.7104 -1.2304 13 8 2.7297 -1.6966 -1.1191 14 7 1.7023 -0.2533 -2.4545 15 6 0.9058 0.8583 -3.0017 16 6 1.8325 0.8252 -4.2361 17 1 1.3339 0.9998 -5.1895 18 6 3.0998 1.6606 -4.0386 19 6 4.2812 0.9492 -4.7047 20 7 4.4149 -0.3802 -4.1029 21 6 5.6016 -0.7494 -3.5280 22 1 6.2658 0.0033 -3.1294 23 6 5.9510 -2.0909 -3.4574 24 7 5.2801 -2.9832 -4.1544 25 14 7.3733 -2.6299 -2.3729 26 1 7.0896 -2.2584 -0.9634 27 1 7.5420 -4.1019 -2.4731 28 1 8.6195 -1.9578 -2.8207 29 6 3.3090 -1.2905 -4.0938 30 6 1.9682 -0.6411 -3.8416 31 1 1.1554 -1.2416 -4.2502 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6318 1.1527 36 1 2.6652 0.8842 5.2002 37 1 3.5476 -1.0622 6.7130 38 1 2.9843 -2.7499 2.8664 39 1 -0.1258 0.5859 -3.2248 40 1 0.9843 1.7772 -2.4207 41 1 2.9632 2.6422 -4.4923 42 1 3.2979 1.7754 -2.9729 43 1 4.0959 0.8515 -5.7744 44 1 5.1947 1.5207 -4.5401 45 1 5.5240 -3.9208 -4.1048 46 1 3.4821 -2.0471 -3.3286 47 1 3.2848 -1.7790 -5.0680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221571259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:52 Heat of formation + Delta-G solvation = -5.104650 kcal Electronic energy + Delta-G solvation = -31727.551339 eV Core-core repulsion = 27492.650110 eV Total energy + Delta-G solvation = -4234.901229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.53774 -42.08065 -40.79260 -39.24543 -37.21434 -36.08016 -34.14500 -33.95648 -32.47593 -31.91734 -30.71073 -29.86636 -28.61326 -26.09300 -25.64659 -24.84320 -23.70710 -22.55080 -22.44344 -21.27810 -21.21792 -19.83837 -19.42074 -18.33948 -17.69904 -17.60544 -17.30587 -17.17562 -17.05000 -16.46627 -16.11121 -16.01830 -15.69480 -15.45639 -15.23745 -14.95368 -14.60352 -14.49852 -14.32541 -14.14192 -13.88939 -13.60234 -13.57092 -13.41590 -13.26185 -13.14410 -12.80426 -12.71471 -12.65620 -12.35219 -12.24717 -11.96979 -11.77588 -11.50818 -11.33227 -11.05106 -10.92352 -10.72986 -10.48205 -10.23807 -9.80546 -9.56393 -8.63404 -7.85440 -5.32682 0.25245 1.08537 1.35014 1.40422 1.44915 1.58267 1.64349 1.99168 2.20865 2.22837 2.46868 3.27366 3.30185 3.43453 3.55468 3.71267 3.78947 3.91312 3.93193 4.05584 4.07321 4.20416 4.43667 4.47984 4.49929 4.59018 4.61565 4.69765 4.69795 4.72828 4.77003 4.84342 4.93032 4.94379 5.06481 5.08455 5.12154 5.18775 5.30379 5.32122 5.43753 5.56108 5.70892 5.83560 5.92655 6.32071 6.40976 6.87926 7.00453 7.18083 7.22007 8.01497 8.34228 9.17106 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009731 B = 0.003975 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.846861 B = 7041.952565 C = 9058.456520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.140 3.860 3 H 0.101 0.899 4 N -0.706 5.706 5 C 0.591 3.409 6 O -0.574 6.574 7 C -0.268 4.268 8 C -0.191 4.191 9 C -0.022 4.022 10 O -0.177 6.177 11 C 0.037 3.963 12 C 0.529 3.471 13 O -0.573 6.573 14 N -0.632 5.632 15 C 0.106 3.894 16 C -0.104 4.104 17 H 0.132 0.868 18 C -0.105 4.105 19 C 0.138 3.862 20 N -0.598 5.598 21 C -0.264 4.264 22 H 0.054 0.946 23 C -0.038 4.038 24 N -0.928 5.928 25 Si 0.955 3.045 26 H -0.291 1.291 27 H -0.290 1.290 28 H -0.271 1.271 29 C 0.181 3.819 30 C 0.107 3.893 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.410 0.590 36 H 0.163 0.837 37 H 0.253 0.747 38 H 0.231 0.769 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.038 0.962 43 H 0.029 0.971 44 H 0.047 0.953 45 H 0.246 0.754 46 H 0.051 0.949 47 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.974 7.354 11.716 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.119 0.881 4 N -0.359 5.359 5 C 0.381 3.619 6 O -0.455 6.455 7 C -0.273 4.273 8 C -0.211 4.211 9 C -0.087 4.087 10 O -0.071 6.071 11 C -0.034 4.034 12 C 0.318 3.682 13 O -0.453 6.453 14 N -0.367 5.367 15 C -0.015 4.015 16 C -0.123 4.123 17 H 0.150 0.850 18 C -0.144 4.144 19 C 0.012 3.988 20 N -0.321 5.321 21 C -0.395 4.395 22 H 0.072 0.928 23 C -0.234 4.234 24 N -0.574 5.574 25 Si 0.784 3.216 26 H -0.218 1.218 27 H -0.216 1.216 28 H -0.196 1.196 29 C 0.054 3.946 30 C 0.003 3.997 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.247 0.753 36 H 0.180 0.820 37 H 0.269 0.731 38 H 0.247 0.753 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -13.626 7.145 12.097 19.571 hybrid contribution 1.297 -1.085 0.257 1.711 sum -12.329 6.059 12.354 18.475 Atomic orbital electron populations 1.22054 0.90142 1.03502 1.04476 1.20661 0.97335 0.96768 0.82040 0.88113 1.45644 1.67090 1.14824 1.08326 1.17532 0.76328 0.85701 0.82352 1.90728 1.52498 1.16595 1.85636 1.21533 1.14136 0.95732 0.95860 1.22958 1.05596 1.01814 0.90684 1.24735 1.03108 0.81961 0.98936 1.83845 1.66052 1.37493 1.19739 1.24901 0.96016 0.96570 0.85930 1.20356 0.80032 0.83977 0.83832 1.90748 1.39637 1.28762 1.86115 1.49504 1.50737 1.32584 1.03847 1.23699 0.96453 0.89492 0.91852 1.22835 0.96588 0.92721 1.00118 0.84975 1.21688 0.93980 0.98758 0.99972 1.20981 0.97056 0.85656 0.95057 1.43065 1.08552 1.14179 1.66261 1.19310 0.97427 0.91518 1.31228 0.92845 1.25615 1.00584 0.97036 1.00119 1.70169 1.43620 1.00919 1.42710 0.85533 0.80209 0.76901 0.78947 1.21831 1.21553 1.19649 1.19365 0.85393 0.91895 0.97956 1.22739 0.98271 0.98691 0.80026 0.88456 0.88541 0.91599 0.90984 0.75292 0.81986 0.73148 0.75278 0.85777 0.88715 0.88229 0.94314 0.95280 0.93417 0.94535 0.93050 0.99329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.37 71.98 0.67 -2.40 16 2 C 0.14 4.16 2.88 44.25 0.13 4.28 16 3 H 0.10 3.17 7.58 -2.39 -0.02 3.15 16 4 N -0.71 -21.26 4.94 -449.40 -2.22 -23.48 16 5 C 0.59 18.49 7.78 86.65 0.67 19.16 16 6 O -0.57 -20.92 16.65 -4.09 -0.07 -20.99 16 7 C -0.27 -7.03 6.31 -18.99 -0.12 -7.15 16 8 C -0.19 -4.16 11.01 23.65 0.26 -3.90 16 9 C -0.02 -0.35 12.03 66.89 0.80 0.45 16 10 O -0.18 -3.45 10.52 4.44 0.05 -3.40 16 11 C 0.04 0.78 11.61 67.39 0.78 1.56 16 12 C 0.53 19.66 7.41 87.66 0.65 20.31 16 13 O -0.57 -27.50 15.11 -3.04 -0.05 -27.54 16 14 N -0.63 -20.40 3.30 -865.41 -2.86 -23.25 16 15 C 0.11 2.10 6.13 81.20 0.50 2.60 16 16 C -0.10 -2.58 4.51 -10.48 -0.05 -2.63 16 17 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 18 C -0.11 -3.11 5.75 30.67 0.18 -2.93 16 19 C 0.14 5.54 6.46 86.42 0.56 6.10 16 20 N -0.60 -31.00 2.98 -713.25 -2.13 -33.13 16 21 C -0.26 -15.62 9.49 84.03 0.80 -14.82 16 22 H 0.05 3.14 7.84 -2.91 -0.02 3.12 16 23 C -0.04 -2.27 4.95 84.86 0.42 -1.85 16 24 N -0.93 -58.33 10.95 21.65 0.24 -58.09 16 25 Si 0.96 49.22 29.57 68.60 2.03 51.25 16 26 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 27 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 29 C 0.18 9.10 4.47 86.36 0.39 9.48 16 30 C 0.11 3.76 4.07 38.69 0.16 3.91 16 31 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.10 1.58 6.38 -2.39 -0.02 1.57 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 11.93 6.76 -92.71 -0.63 11.30 16 36 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 37 H 0.25 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.23 3.80 7.47 -2.91 -0.02 3.78 16 39 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.09 1.58 8.10 -2.39 -0.02 1.56 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.04 1.32 7.76 -2.39 -0.02 1.30 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.05 1.95 7.88 -2.38 -0.02 1.93 16 45 H 0.25 15.11 8.31 -92.70 -0.77 14.33 16 46 H 0.05 3.10 4.99 -2.39 -0.01 3.09 16 47 H -0.01 -0.61 7.92 -2.39 -0.02 -0.63 16 Total: -1.00 -87.49 383.67 2.17 -85.32 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.38 Total: 21.12 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: 6.80 Total: 32.19 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -6.96 Total: -137.94 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.07 Total: -51.93 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.25 kcal Total: -87.49 2.17 -85.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221571259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.214 kcal (2) G-P(sol) polarization free energy of solvation -87.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds