Wall clock time and date at job start Wed Apr 1 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47181 * 2 1 4 4 O 1.42902 * 109.46777 * 239.99506 * 2 1 3 5 5 C 1.35906 * 116.99711 * 84.95312 * 4 2 1 6 6 C 1.38731 * 120.05519 * 174.27171 * 5 4 2 7 7 C 1.38149 * 119.94103 * 179.74379 * 6 5 4 8 8 C 1.38267 * 120.05560 * 0.51105 * 7 6 5 9 9 C 1.38266 * 120.11325 * 359.76313 * 8 7 6 10 10 C 1.38149 * 120.05347 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46878 * 120.00223 * 2 1 3 12 12 O 1.21276 * 120.00364 * 120.00064 * 11 2 1 13 13 N 1.34780 * 119.99613 * 299.99358 * 11 2 1 14 14 C 1.46501 * 119.99604 * 180.02562 * 13 11 2 15 15 C 1.53507 * 114.17065 * 204.99969 * 14 13 11 16 16 N 1.47480 * 87.93599 * 220.33037 * 15 14 13 17 17 C 1.46902 * 110.99713 * 138.70360 * 16 15 14 18 18 C 1.50704 * 109.46950 * 170.00424 * 17 16 15 19 19 O 1.21287 * 119.99671 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99867 * 179.72225 * 18 17 16 21 21 C 1.37099 * 119.99595 * 179.97438 * 20 18 17 22 22 H 1.07992 * 120.00317 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99538 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99851 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99890 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47135 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46986 * 120.00073 * 25 23 21 28 28 H 1.48499 * 109.47266 * 240.00167 * 25 23 21 29 29 C 1.47485 * 87.83233 * 27.01621 * 16 15 14 30 30 H 1.09000 * 109.47372 * 300.00024 * 1 2 3 31 31 H 1.08999 * 109.47221 * 60.00187 * 1 2 3 32 32 H 1.09004 * 109.46924 * 180.02562 * 1 2 3 33 33 H 1.07999 * 120.02952 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.96792 * 180.22878 * 7 6 5 35 35 H 1.07995 * 119.94089 * 179.75099 * 8 7 6 36 36 H 1.07990 * 119.97214 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.02571 * 179.97438 * 10 9 8 38 38 H 0.97001 * 120.00225 * 0.02562 * 13 11 2 39 39 H 1.08999 * 113.38547 * 338.08316 * 14 13 11 40 40 H 1.09005 * 113.47818 * 105.56608 * 15 14 13 41 41 H 1.09001 * 113.53509 * 335.11012 * 15 14 13 42 42 H 1.09000 * 109.47474 * 50.00148 * 17 16 15 43 43 H 1.09000 * 109.47341 * 290.00203 * 17 16 15 44 44 H 0.96996 * 119.99483 * 0.02562 * 20 18 17 45 45 H 0.97001 * 119.99723 * 179.97438 * 24 23 21 46 46 H 1.08994 * 113.47788 * 87.75132 * 29 16 15 47 47 H 1.09001 * 113.47113 * 218.22251 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.1115 0.0622 -2.3044 6 6 2.6776 -0.4943 -3.4422 7 6 2.7785 0.2542 -4.5989 8 6 2.3255 1.5604 -4.6202 9 6 1.7660 2.1192 -3.4860 10 6 1.6579 1.3731 -2.3283 11 6 2.0323 -0.7105 1.2305 12 8 2.7295 -1.6965 1.1193 13 7 1.7067 -0.2499 2.4546 14 6 2.1955 -0.9402 3.6507 15 6 1.3235 -0.7322 4.8969 16 7 2.5666 -0.6200 5.6825 17 6 2.4654 0.4564 6.6771 18 6 3.6416 0.3844 7.6165 19 8 4.4812 -0.4788 7.4720 20 7 3.7631 1.2825 8.6142 21 6 4.8329 1.2167 9.4691 22 1 5.5784 0.4456 9.3429 23 6 4.9579 2.1423 10.4979 24 7 4.0505 3.0802 10.6517 25 14 6.4151 2.0523 11.6632 26 1 7.2866 0.9131 11.2789 27 1 7.1903 3.3165 11.5848 28 1 5.9270 1.8562 13.0519 29 6 3.2330 -0.1449 4.4556 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.0357 -1.5131 -3.4247 34 1 3.2157 -0.1798 -5.4859 35 1 2.4090 2.1451 -5.5243 36 1 1.4134 3.1397 -3.5051 37 1 1.2213 1.8102 -1.4425 38 1 1.1488 0.5386 2.5436 39 1 2.4726 -1.9785 3.4682 40 1 0.7227 -1.6037 5.1570 41 1 0.7411 0.1888 4.8717 42 1 1.5408 0.3424 7.2431 43 1 2.4642 1.4210 6.1697 44 1 3.0933 1.9748 8.7276 45 1 4.1376 3.7261 11.3701 46 1 3.1606 0.9331 4.3118 47 1 4.2505 -0.5187 4.3416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268479429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:07 Heat of formation + Delta-G solvation = -32.752031 kcal Electronic energy + Delta-G solvation = -28956.274146 eV Core-core repulsion = 24720.174037 eV Total energy + Delta-G solvation = -4236.100109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12457 -40.44169 -39.19396 -37.82971 -37.48680 -34.47512 -33.87172 -32.57326 -31.29649 -31.18149 -30.10249 -29.65289 -25.98698 -25.93931 -25.03394 -23.74243 -23.08943 -22.40373 -20.74984 -20.24862 -19.27872 -18.83861 -17.93947 -17.61810 -16.83880 -16.37258 -16.13205 -16.08011 -15.86758 -15.31950 -15.13422 -14.82735 -14.63795 -14.41177 -14.27537 -13.89248 -13.82114 -13.58702 -13.30244 -13.06582 -12.96727 -12.85846 -12.67321 -12.33143 -12.28028 -11.97558 -11.66995 -11.59202 -11.49134 -11.25701 -11.21734 -11.09837 -10.70955 -10.34259 -10.22648 -10.09229 -9.51460 -9.41255 -9.30131 -8.89726 -8.60767 -8.23999 -7.96498 -6.42277 -3.82799 0.92099 1.03576 2.16506 2.25340 3.15357 3.16252 3.26832 3.34579 3.38680 3.88524 3.94446 4.12325 4.19886 4.25954 4.31320 4.42323 4.44595 4.49070 4.71873 4.73961 4.88152 4.93161 4.96935 5.05373 5.11819 5.13493 5.24641 5.26677 5.27229 5.50793 5.54019 5.59763 5.60716 5.62964 5.78680 5.89008 5.99105 6.00116 6.13204 6.15746 6.24990 6.34333 6.45500 6.93914 7.04802 7.15146 7.55358 7.85538 8.06004 8.61716 9.18470 9.53965 10.06450 10.75697 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020286 B = 0.001593 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.902763 B =17567.957563 C =18020.026102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.066 3.934 3 H 0.101 0.899 4 O -0.284 6.284 5 C 0.131 3.869 6 C -0.149 4.149 7 C -0.080 4.080 8 C -0.160 4.160 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.520 3.480 12 O -0.510 6.510 13 N -0.714 5.714 14 C 0.119 3.881 15 C -0.013 4.013 16 N -0.433 5.433 17 C 0.011 3.989 18 C 0.446 3.554 19 O -0.573 6.573 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C -0.009 4.009 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.401 0.599 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.071 0.929 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 1.020 -27.855 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 H 0.118 0.882 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.168 4.168 7 C -0.098 4.098 8 C -0.178 4.178 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.304 3.696 12 O -0.383 6.383 13 N -0.367 5.367 14 C 0.014 3.986 15 C -0.143 4.143 16 N -0.156 5.156 17 C -0.121 4.121 18 C 0.230 3.770 19 O -0.455 6.455 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.139 4.139 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.235 0.765 39 H 0.150 0.850 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.102 -0.931 -27.441 29.616 hybrid contribution -0.454 2.058 0.605 2.192 sum -11.557 1.127 -26.835 29.240 Atomic orbital electron populations 1.22354 0.92460 1.04644 1.03940 1.22213 0.95795 0.97155 0.84250 0.88176 1.86224 1.80965 1.36831 1.15652 1.19089 0.95313 0.90380 0.86659 1.20513 1.03369 1.01645 0.91244 1.21007 0.97676 0.94004 0.97115 1.21096 1.02064 0.95876 0.98799 1.20965 0.97134 0.99430 0.92282 1.21315 1.07271 0.94316 1.00276 1.20068 0.80615 0.84890 0.84059 1.90776 1.36025 1.25241 1.86256 1.45849 1.53863 1.31993 1.04997 1.22755 0.95330 0.98878 0.81593 1.24324 0.95115 1.02514 0.92333 1.68810 1.06958 1.35266 1.04532 1.22504 1.00026 0.93485 0.96080 1.19639 0.88276 0.84923 0.84120 1.90540 1.43608 1.37435 1.73957 1.41868 1.24240 1.27840 1.26505 1.19759 1.02096 1.13778 1.07062 0.87870 1.25249 0.98740 0.95638 0.98362 1.69617 1.34852 1.16908 1.33138 0.85802 0.80743 0.78269 0.79561 1.19203 1.20796 1.20743 1.24424 1.01126 0.98642 0.89733 0.90158 0.90489 0.90448 0.84962 0.85265 0.85878 0.85715 0.85271 0.76458 0.85050 0.88723 0.91057 0.89199 0.92233 0.77596 0.91979 0.91128 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 9.07 37.16 0.34 -0.61 16 2 C 0.07 0.54 2.64 -27.88 -0.07 0.47 16 3 H 0.10 0.61 6.31 -51.93 -0.33 0.29 16 4 O -0.28 -3.14 9.33 -39.36 -0.37 -3.51 16 5 C 0.13 1.25 6.60 -39.22 -0.26 0.99 16 6 C -0.15 -1.32 9.99 -39.43 -0.39 -1.72 16 7 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 8 C -0.16 -1.05 10.04 -39.56 -0.40 -1.44 16 9 C -0.08 -0.53 10.04 -39.60 -0.40 -0.93 16 10 C -0.21 -1.60 8.24 -39.43 -0.33 -1.92 16 11 C 0.52 5.72 7.23 -10.98 -0.08 5.64 16 12 O -0.51 -8.14 16.09 -14.35 -0.23 -8.37 16 13 N -0.71 -6.19 5.28 -53.54 -0.28 -6.47 16 14 C 0.12 1.37 4.59 -67.71 -0.31 1.06 16 15 C -0.01 -0.14 7.45 -7.55 -0.06 -0.20 16 16 N -0.43 -6.95 5.82 -246.10 -1.43 -8.38 16 17 C 0.01 0.19 5.30 -4.97 -0.03 0.17 16 18 C 0.45 10.59 7.85 -10.98 -0.09 10.50 16 19 O -0.57 -15.97 16.01 5.55 0.09 -15.88 16 20 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 25 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C -0.01 -0.13 7.52 -7.54 -0.06 -0.18 16 30 H 0.08 0.24 7.56 -51.93 -0.39 -0.15 16 31 H 0.08 0.36 6.91 -51.93 -0.36 0.00 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.13 0.70 5.43 -52.49 -0.28 0.42 16 38 H 0.40 2.10 8.17 -40.82 -0.33 1.77 16 39 H 0.13 1.77 7.46 -51.93 -0.39 1.38 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 42 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 43 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.07 0.89 7.42 -51.93 -0.39 0.50 16 47 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -36.51 396.10 -9.85 -46.36 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.47 Total: 9.49 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.76 Total: 2.85 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -1.05 Total: -53.03 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.51 Total: -27.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.51 -9.85 -46.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268479429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.605 kcal (2) G-P(sol) polarization free energy of solvation -36.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds