Wall clock time and date at job start Wed Apr 1 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47181 * 2 1 4 4 O 1.42902 * 109.46777 * 239.99506 * 2 1 3 5 5 C 1.35906 * 116.99711 * 84.95312 * 4 2 1 6 6 C 1.38731 * 120.05519 * 174.27171 * 5 4 2 7 7 C 1.38149 * 119.94103 * 179.74379 * 6 5 4 8 8 C 1.38267 * 120.05560 * 0.51105 * 7 6 5 9 9 C 1.38266 * 120.11325 * 359.76313 * 8 7 6 10 10 C 1.38149 * 120.05347 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46878 * 120.00223 * 2 1 3 12 12 O 1.21276 * 120.00364 * 120.00064 * 11 2 1 13 13 N 1.34780 * 119.99613 * 299.99358 * 11 2 1 14 14 C 1.46501 * 119.99604 * 180.02562 * 13 11 2 15 15 C 1.53507 * 114.17065 * 204.99969 * 14 13 11 16 16 N 1.47480 * 87.93599 * 220.33037 * 15 14 13 17 17 C 1.46902 * 110.99713 * 138.70360 * 16 15 14 18 18 C 1.50704 * 109.46950 * 170.00424 * 17 16 15 19 19 O 1.21287 * 119.99671 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99867 * 179.72225 * 18 17 16 21 21 C 1.37099 * 119.99595 * 179.97438 * 20 18 17 22 22 H 1.07992 * 120.00317 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99538 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99851 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99890 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47135 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46986 * 120.00073 * 25 23 21 28 28 H 1.48499 * 109.47266 * 240.00167 * 25 23 21 29 29 C 1.47485 * 87.83233 * 27.01621 * 16 15 14 30 30 H 1.09000 * 109.47372 * 300.00024 * 1 2 3 31 31 H 1.08999 * 109.47221 * 60.00187 * 1 2 3 32 32 H 1.09004 * 109.46924 * 180.02562 * 1 2 3 33 33 H 1.07999 * 120.02952 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.96792 * 180.22878 * 7 6 5 35 35 H 1.07995 * 119.94089 * 179.75099 * 8 7 6 36 36 H 1.07990 * 119.97214 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.02571 * 179.97438 * 10 9 8 38 38 H 0.97001 * 120.00225 * 0.02562 * 13 11 2 39 39 H 1.08999 * 113.38547 * 338.08316 * 14 13 11 40 40 H 1.09005 * 113.47818 * 105.56608 * 15 14 13 41 41 H 1.09001 * 113.53509 * 335.11012 * 15 14 13 42 42 H 1.09000 * 109.47474 * 50.00148 * 17 16 15 43 43 H 1.09000 * 109.47341 * 290.00203 * 17 16 15 44 44 H 0.96996 * 119.99483 * 0.02562 * 20 18 17 45 45 H 0.97001 * 119.99723 * 179.97438 * 24 23 21 46 46 H 1.08994 * 113.47788 * 87.75132 * 29 16 15 47 47 H 1.09001 * 113.47113 * 218.22251 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.1115 0.0622 -2.3044 6 6 2.6776 -0.4943 -3.4422 7 6 2.7785 0.2542 -4.5989 8 6 2.3255 1.5604 -4.6202 9 6 1.7660 2.1192 -3.4860 10 6 1.6579 1.3731 -2.3283 11 6 2.0323 -0.7105 1.2305 12 8 2.7295 -1.6965 1.1193 13 7 1.7067 -0.2499 2.4546 14 6 2.1955 -0.9402 3.6507 15 6 1.3235 -0.7322 4.8969 16 7 2.5666 -0.6200 5.6825 17 6 2.4654 0.4564 6.6771 18 6 3.6416 0.3844 7.6165 19 8 4.4812 -0.4788 7.4720 20 7 3.7631 1.2825 8.6142 21 6 4.8329 1.2167 9.4691 22 1 5.5784 0.4456 9.3429 23 6 4.9579 2.1423 10.4979 24 7 4.0505 3.0802 10.6517 25 14 6.4151 2.0523 11.6632 26 1 7.2866 0.9131 11.2789 27 1 7.1903 3.3165 11.5848 28 1 5.9270 1.8562 13.0519 29 6 3.2330 -0.1449 4.4556 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.0357 -1.5131 -3.4247 34 1 3.2157 -0.1798 -5.4859 35 1 2.4090 2.1451 -5.5243 36 1 1.4134 3.1397 -3.5051 37 1 1.2213 1.8102 -1.4425 38 1 1.1488 0.5386 2.5436 39 1 2.4726 -1.9785 3.4682 40 1 0.7227 -1.6037 5.1570 41 1 0.7411 0.1888 4.8717 42 1 1.5408 0.3424 7.2431 43 1 2.4642 1.4210 6.1697 44 1 3.0933 1.9748 8.7276 45 1 4.1376 3.7261 11.3701 46 1 3.1606 0.9331 4.3118 47 1 4.2505 -0.5187 4.3416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268479429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:06 Heat of formation + Delta-G solvation = -61.170718 kcal Electronic energy + Delta-G solvation = -28957.506473 eV Core-core repulsion = 24720.174037 eV Total energy + Delta-G solvation = -4237.332436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96437 -41.32251 -40.19989 -39.47455 -38.21649 -35.97825 -35.36192 -33.36478 -33.14560 -31.78100 -31.01769 -30.50532 -27.43783 -26.98047 -26.07300 -24.91987 -23.72262 -23.08822 -21.61166 -21.26637 -20.94037 -19.91527 -19.43469 -18.43586 -17.91444 -17.66415 -16.99865 -16.80020 -16.68327 -16.54864 -16.46018 -16.09336 -15.73155 -15.50925 -15.39796 -15.13829 -14.80523 -14.42870 -14.31255 -14.09907 -13.80084 -13.72616 -13.60465 -13.52520 -13.29087 -13.03327 -12.84566 -12.76555 -12.45488 -12.43989 -12.35730 -12.13308 -12.08261 -11.87451 -11.74459 -11.51195 -10.98882 -10.40045 -10.21002 -10.00978 -9.94252 -9.78473 -9.19058 -8.47672 -5.95864 0.39557 0.47629 1.35422 1.36925 1.40795 1.48462 1.54839 2.06065 2.27956 2.46509 2.85030 2.87699 3.18555 3.28048 3.44040 3.49949 3.68566 3.75663 3.87382 3.93722 4.00867 4.07563 4.27020 4.27304 4.29600 4.38735 4.41586 4.51989 4.53471 4.63249 4.66171 4.69907 4.77639 4.78223 4.88247 5.08860 5.13682 5.29738 5.32665 5.35422 5.40844 5.48634 5.61619 5.83856 5.86679 6.06627 6.31244 6.47430 6.61083 7.08459 7.13485 7.56852 8.14402 8.69867 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020286 B = 0.001593 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.902763 B =17567.957563 C =18020.026102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.067 3.933 3 H 0.125 0.875 4 O -0.317 6.317 5 C 0.107 3.893 6 C -0.176 4.176 7 C -0.085 4.085 8 C -0.163 4.163 9 C -0.083 4.083 10 C -0.215 4.215 11 C 0.516 3.484 12 O -0.570 6.570 13 N -0.691 5.691 14 C 0.131 3.869 15 C 0.006 3.994 16 N -0.477 5.477 17 C 0.026 3.974 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.074 0.926 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.990 3.010 26 H -0.277 1.277 27 H -0.270 1.270 28 H -0.269 1.269 29 C -0.013 4.013 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.423 0.577 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.093 0.907 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.839 3.846 -28.552 32.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 H 0.143 0.857 4 O -0.231 6.231 5 C 0.062 3.938 6 C -0.195 4.195 7 C -0.102 4.102 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.233 4.233 11 C 0.303 3.697 12 O -0.448 6.448 13 N -0.345 5.345 14 C 0.025 3.975 15 C -0.123 4.123 16 N -0.200 5.200 17 C -0.105 4.105 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.092 0.908 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.814 3.186 26 H -0.202 1.202 27 H -0.195 1.195 28 H -0.195 1.195 29 C -0.143 4.143 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.140 0.860 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.109 0.891 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.506 1.958 -28.140 31.274 hybrid contribution 0.287 1.172 0.753 1.422 sum -13.219 3.130 -27.387 30.571 Atomic orbital electron populations 1.22371 0.89968 1.04345 1.06028 1.22383 0.97483 0.97278 0.82052 0.85729 1.86175 1.81761 1.38435 1.16743 1.19334 0.96660 0.91457 0.86330 1.20701 1.04573 1.01828 0.92351 1.21277 0.97484 0.94418 0.97061 1.21466 1.01150 0.95676 0.99845 1.21360 0.96409 1.00537 0.91814 1.21570 1.06841 0.93382 1.01551 1.20727 0.79488 0.84155 0.85366 1.90755 1.38832 1.28052 1.87129 1.45582 1.53233 1.32188 1.03520 1.22318 0.94941 0.97363 0.82854 1.24342 0.93455 1.04849 0.89664 1.68723 1.10346 1.35446 1.05448 1.22386 0.97253 0.95498 0.95395 1.20920 0.89388 0.83171 0.83961 1.90507 1.46040 1.39189 1.75144 1.41921 1.23877 1.28575 1.26855 1.19662 1.03221 1.14336 1.09184 0.90797 1.25973 1.01108 0.94859 0.99098 1.69660 1.35721 1.16957 1.33593 0.84911 0.77629 0.78207 0.77824 1.20203 1.19476 1.19455 1.24466 0.99766 1.00051 0.90033 0.87018 0.89353 0.91968 0.85982 0.83455 0.83558 0.83076 0.83132 0.73791 0.87734 0.87783 0.86984 0.86572 0.89090 0.76851 0.91278 0.88931 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.07 71.98 0.65 -0.74 16 2 C 0.07 1.01 2.64 29.85 0.08 1.09 16 3 H 0.13 1.20 6.31 -2.39 -0.02 1.19 16 4 O -0.32 -7.19 9.33 -73.46 -0.69 -7.88 16 5 C 0.11 2.03 6.60 22.51 0.15 2.18 16 6 C -0.18 -3.26 9.99 22.37 0.22 -3.04 16 7 C -0.08 -1.13 10.04 22.26 0.22 -0.91 16 8 C -0.16 -1.79 10.04 22.28 0.22 -1.57 16 9 C -0.08 -0.88 10.04 22.26 0.22 -0.66 16 10 C -0.22 -2.79 8.24 22.37 0.18 -2.61 16 11 C 0.52 11.16 7.23 87.66 0.63 11.80 16 12 O -0.57 -19.19 16.09 16.02 0.26 -18.94 16 13 N -0.69 -10.56 5.28 -441.68 -2.33 -12.89 16 14 C 0.13 2.90 4.59 45.45 0.21 3.10 16 15 C 0.01 0.11 7.45 83.57 0.62 0.73 16 16 N -0.48 -14.75 5.82 -932.53 -5.43 -20.18 16 17 C 0.03 0.84 5.30 85.56 0.45 1.30 16 18 C 0.44 21.02 7.85 87.66 0.69 21.70 16 19 O -0.62 -36.10 16.01 -3.05 -0.05 -36.15 16 20 N -0.57 -29.35 5.29 -306.98 -1.62 -30.97 16 21 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 22 H 0.07 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 24 N -0.92 -48.99 13.05 21.66 0.28 -48.70 16 25 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 C -0.01 -0.36 7.52 83.57 0.63 0.27 16 30 H 0.11 0.18 7.56 -2.39 -0.02 0.16 16 31 H 0.09 0.56 6.91 -2.39 -0.02 0.55 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.12 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.15 0.75 8.06 -2.92 -0.02 0.72 16 37 H 0.15 1.14 5.43 -2.91 -0.02 1.12 16 38 H 0.42 2.67 8.17 -92.71 -0.76 1.91 16 39 H 0.10 2.94 7.46 -2.39 -0.02 2.93 16 40 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.11 1.24 7.90 -2.39 -0.02 1.22 16 42 H 0.12 3.11 8.08 -2.39 -0.02 3.10 16 43 H 0.09 2.35 7.30 -2.39 -0.02 2.33 16 44 H 0.40 18.87 7.90 -92.71 -0.73 18.13 16 45 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 46 H 0.09 2.12 7.42 -2.39 -0.02 2.11 16 47 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -85.50 396.10 -1.54 -87.05 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.47 Total: 29.22 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.47 Total: 14.16 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -9.10 Total: -112.74 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -0.48 Total: -62.96 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -85.50 -1.54 -87.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268479429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.877 kcal (2) G-P(sol) polarization free energy of solvation -85.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds