Wall clock time and date at job start Wed Apr 1 2020 05:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47203 * 2 1 4 4 C 1.47200 * 109.47190 * 119.99696 * 2 1 3 5 5 N 2.60806 * 109.47157 * 119.99779 * 2 1 3 6 6 C 1.50698 * 109.47279 * 239.99768 * 2 1 3 7 7 O 1.21277 * 120.00160 * 265.05324 * 6 2 1 8 8 N 1.34776 * 119.99992 * 85.05650 * 6 2 1 9 9 C 1.46935 * 120.68350 * 354.91216 * 8 6 2 10 10 C 1.53190 * 108.88478 * 125.91169 * 9 8 6 11 11 C 1.53131 * 109.28819 * 55.11976 * 10 9 8 12 12 C 1.52438 * 109.60825 * 299.57976 * 11 10 9 13 13 C 1.53740 * 110.35254 * 182.19359 * 12 11 10 14 14 C 1.51452 * 103.36323 * 118.79180 * 13 12 11 15 15 O 1.21227 * 125.41325 * 179.97438 * 14 13 12 16 16 N 1.33961 * 109.17017 * 359.97438 * 14 13 12 17 17 C 1.46503 * 122.78335 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.46972 * 90.02683 * 17 16 14 19 19 C 1.50707 * 109.47076 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99632 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31524 * 119.99745 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00296 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46967 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47397 * 119.99772 * 23 21 19 26 26 H 1.48498 * 109.47342 * 240.00023 * 23 21 19 27 27 C 1.34048 * 114.43054 * 0.02562 * 16 14 13 28 28 O 1.21226 * 125.49846 * 180.02562 * 27 16 14 29 29 C 1.47031 * 120.68548 * 174.89485 * 8 6 2 30 30 H 1.08997 * 109.47519 * 301.38846 * 1 2 3 31 31 H 1.09000 * 109.46948 * 61.39267 * 1 2 3 32 32 H 1.09000 * 109.46850 * 181.38909 * 1 2 3 33 33 H 1.09000 * 109.56734 * 6.09451 * 9 8 6 34 34 H 1.08994 * 109.66980 * 245.79082 * 9 8 6 35 35 H 1.09007 * 109.50242 * 295.17931 * 10 9 8 36 36 H 1.08992 * 109.53428 * 175.08458 * 10 9 8 37 37 H 1.09002 * 109.44372 * 59.61573 * 11 10 9 38 38 H 1.08997 * 109.44446 * 179.54888 * 11 10 9 39 39 H 1.09001 * 110.64487 * 237.26011 * 13 12 11 40 40 H 1.09001 * 110.64212 * 0.16154 * 13 12 11 41 41 H 1.09000 * 109.46834 * 210.02937 * 17 16 14 42 42 H 1.09003 * 109.46873 * 330.02446 * 17 16 14 43 43 H 1.09000 * 109.47549 * 299.99817 * 18 17 16 44 44 H 1.09003 * 109.47514 * 60.00156 * 18 17 16 45 45 H 0.96998 * 119.99487 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.58291 * 352.53327 * 29 8 6 47 47 H 1.09002 * 109.58378 * 112.79507 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2019 5 7 2.3993 -1.2294 2.1295 6 6 2.0323 -0.7104 -1.2304 7 8 2.3199 -1.8874 -1.1762 8 7 2.1622 -0.0379 -2.3911 9 6 1.7146 1.3572 -2.5034 10 6 2.8765 2.2104 -3.0218 11 6 3.3914 1.6184 -4.3368 12 6 3.8832 0.1952 -4.0993 13 6 4.4548 -0.3967 -5.3979 14 6 5.9001 -0.6817 -5.0463 15 8 6.7240 -1.1611 -5.7953 16 7 6.1234 -0.3197 -3.7760 17 6 7.4284 -0.4670 -3.1268 18 6 8.2514 0.8047 -3.3420 19 6 9.5937 0.6535 -2.6737 20 1 9.8356 -0.2586 -2.1485 21 6 10.5127 1.6796 -2.7328 22 7 10.2181 2.7902 -3.3729 23 14 12.1767 1.4920 -1.9052 24 1 12.2599 0.1581 -1.2577 25 1 13.2522 1.6173 -2.9215 26 1 12.3408 2.5515 -0.8776 27 6 5.0533 0.1873 -3.1477 28 8 5.0299 0.5773 -2.0001 29 6 2.7549 -0.6848 -3.5709 30 1 -0.3634 0.5352 0.8772 31 1 -0.3633 0.4921 -0.9022 32 1 -0.3633 -1.0274 0.0249 33 1 1.4033 1.7207 -1.5241 34 1 0.8776 1.4191 -3.1988 35 1 3.6806 2.2160 -2.2858 36 1 2.5320 3.2303 -3.1921 37 1 2.5846 1.6060 -5.0697 38 1 4.2131 2.2283 -4.7122 39 1 3.9349 -1.3176 -5.6620 40 1 4.3900 0.3264 -6.2110 41 1 7.2864 -0.6316 -2.0587 42 1 7.9551 -1.3180 -3.5587 43 1 8.3934 0.9693 -4.4101 44 1 7.7247 1.6558 -2.9101 45 1 10.8648 3.5119 -3.4148 46 1 3.1526 -1.6604 -3.2915 47 1 1.9935 -0.8079 -4.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269265683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:33 Heat of formation + Delta-G solvation = -73.123703 kcal Electronic energy + Delta-G solvation = -31881.857785 eV Core-core repulsion = 27644.007029 eV Total energy + Delta-G solvation = -4237.850756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22577 -40.48702 -38.52641 -37.50751 -36.65305 -35.64399 -34.74126 -33.55087 -32.89973 -32.27781 -30.12647 -27.98679 -26.50527 -25.33990 -25.15154 -24.20779 -22.48014 -21.86020 -21.17850 -20.26705 -18.56314 -17.97387 -17.71083 -17.03076 -16.53449 -16.18095 -16.05073 -15.86776 -15.46901 -14.85558 -14.69235 -14.50805 -14.37410 -14.28608 -14.03462 -13.86403 -13.63248 -13.43674 -13.13224 -13.00603 -12.87554 -12.80970 -12.77883 -12.56558 -12.38496 -12.19102 -12.08414 -11.83814 -11.58156 -11.43987 -11.28851 -11.03936 -10.99629 -10.80873 -10.27908 -10.14222 -10.09478 -9.98559 -9.65984 -9.25667 -8.99488 -8.92370 -8.42451 -6.07482 -4.10755 1.73733 2.04739 2.31139 2.62454 2.82844 2.89379 2.99218 3.29561 3.36749 3.41900 3.53844 3.89147 4.03327 4.11884 4.23875 4.36103 4.42225 4.42943 4.51014 4.63823 4.67281 4.75332 5.01024 5.05093 5.08153 5.18628 5.19781 5.23423 5.29549 5.34618 5.37563 5.46679 5.55006 5.62405 5.77922 5.89640 5.92730 6.03034 6.12723 6.28630 6.62941 6.91983 7.16139 7.36259 7.52740 7.61525 7.65444 7.74647 7.88421 8.08058 8.28599 8.94230 9.53644 11.04238 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.003346 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.055410 B = 8365.110505 C = 9537.082868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.012 4.012 3 H 0.139 0.861 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.535 3.465 7 O -0.526 6.526 8 N -0.602 5.602 9 C 0.105 3.895 10 C -0.151 4.151 11 C -0.098 4.098 12 C -0.115 4.115 13 C -0.149 4.149 14 C 0.524 3.476 15 O -0.479 6.479 16 N -0.566 5.566 17 C 0.101 3.899 18 C 0.016 3.984 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.893 5.893 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.536 3.464 28 O -0.466 6.466 29 C 0.137 3.863 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.098 0.902 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.642 0.352 -3.319 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 H 0.156 0.844 4 C -0.100 4.100 5 N -0.084 5.084 6 C 0.320 3.680 7 O -0.401 6.401 8 N -0.334 5.334 9 C -0.017 4.017 10 C -0.189 4.189 11 C -0.136 4.136 12 C -0.120 4.120 13 C -0.189 4.189 14 C 0.312 3.688 15 O -0.351 6.351 16 N -0.307 5.307 17 C -0.018 4.018 18 C -0.021 4.021 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.531 5.531 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.323 3.677 28 O -0.337 6.337 29 C 0.014 3.986 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.116 0.884 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.361 -0.995 -1.667 25.435 hybrid contribution 1.118 0.394 -0.046 1.186 sum -24.244 -0.601 -1.712 24.312 Atomic orbital electron populations 1.21791 0.89283 1.04501 1.04378 1.18850 0.98848 1.00244 0.85711 0.84384 1.28034 0.93997 0.93933 0.94024 1.81204 1.07374 1.07822 1.11988 1.19875 0.77696 0.86904 0.83504 1.90774 1.49410 1.15642 1.84289 1.47863 1.61228 1.13673 1.10676 1.21913 0.97021 0.80066 1.02731 1.22131 0.99490 0.98983 0.98300 1.21393 1.01890 0.91877 0.98437 1.21526 0.95696 0.99602 0.95142 1.22557 0.93584 1.04755 0.98024 1.20652 0.90482 0.76431 0.81282 1.90772 1.51341 1.40456 1.52493 1.47040 1.14009 1.55406 1.14273 1.22269 0.79320 1.02991 0.97260 1.19355 0.94223 0.90711 0.97836 1.21051 0.99010 1.01649 1.34297 0.92262 1.24985 0.98779 0.95124 0.95284 1.69978 1.35515 1.05429 1.42206 0.86456 0.83627 0.78267 0.79215 1.19586 1.20871 1.20895 1.20212 0.84201 0.75900 0.87376 1.90691 1.83662 1.43014 1.16335 1.21415 0.93669 0.96167 0.87347 0.90087 0.89851 0.90839 0.89208 0.90369 0.88943 0.89762 0.89776 0.90259 0.86263 0.85868 0.90128 0.90023 0.96031 0.96083 0.92917 0.88374 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 8.93 37.16 0.33 -0.25 16 2 C -0.01 -0.10 2.24 -94.56 -0.21 -0.31 16 3 H 0.14 0.74 6.50 -51.93 -0.34 0.40 16 4 C 0.22 2.74 14.02 -20.76 -0.29 2.45 16 5 N -0.41 -6.38 18.54 42.16 0.78 -5.60 16 6 C 0.53 5.81 6.78 -10.99 -0.07 5.73 16 7 O -0.53 -8.09 15.70 5.56 0.09 -8.00 16 8 N -0.60 -5.04 2.53 -173.08 -0.44 -5.48 16 9 C 0.11 0.51 5.83 -3.71 -0.02 0.48 16 10 C -0.15 -1.06 5.81 -26.57 -0.15 -1.21 16 11 C -0.10 -0.73 4.52 -26.95 -0.12 -0.85 16 12 C -0.12 -1.14 0.69 -155.74 -0.11 -1.24 16 13 C -0.15 -1.39 6.30 -27.13 -0.17 -1.56 16 14 C 0.52 8.40 8.09 -10.98 -0.09 8.31 16 15 O -0.48 -9.43 17.48 5.60 0.10 -9.33 16 16 N -0.57 -10.18 2.56 -115.42 -0.30 -10.48 16 17 C 0.10 2.20 5.50 -4.04 -0.02 2.18 16 18 C 0.02 0.43 5.30 -27.88 -0.15 0.29 16 19 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 20 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 23 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.54 8.46 6.49 -11.25 -0.07 8.39 16 28 O -0.47 -8.59 14.97 5.60 0.08 -8.50 16 29 C 0.14 1.16 4.92 -3.99 -0.02 1.14 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.14 7.36 -51.93 -0.38 -0.24 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.25 5.09 -51.93 -0.26 -0.01 16 34 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.09 1.01 5.96 -51.92 -0.31 0.70 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.12 0.78 7.71 -51.93 -0.40 0.38 16 40 H 0.12 0.88 7.72 -51.93 -0.40 0.48 16 41 H 0.08 1.78 7.84 -51.93 -0.41 1.38 16 42 H 0.08 1.78 7.83 -51.93 -0.41 1.37 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.10 1.07 7.04 -51.93 -0.37 0.71 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -39.98 388.29 -6.32 -46.30 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -6.62 Total: -5.43 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -1.58 Total: 9.87 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.78 Total: -47.74 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.27 Total: -25.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.98 -6.32 -46.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269265683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.821 kcal (2) G-P(sol) polarization free energy of solvation -39.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds