Wall clock time and date at job start Wed Apr 1 2020 05:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47203 * 2 1 4 4 C 1.47200 * 109.47190 * 119.99696 * 2 1 3 5 5 N 2.60806 * 109.47157 * 119.99779 * 2 1 3 6 6 C 1.50698 * 109.47279 * 239.99768 * 2 1 3 7 7 O 1.21277 * 120.00160 * 265.05324 * 6 2 1 8 8 N 1.34776 * 119.99992 * 85.05650 * 6 2 1 9 9 C 1.46935 * 120.68350 * 354.91216 * 8 6 2 10 10 C 1.53190 * 108.88478 * 125.91169 * 9 8 6 11 11 C 1.53131 * 109.28819 * 55.11976 * 10 9 8 12 12 C 1.52438 * 109.60825 * 299.57976 * 11 10 9 13 13 C 1.53740 * 110.35254 * 182.19359 * 12 11 10 14 14 C 1.51452 * 103.36323 * 118.79180 * 13 12 11 15 15 O 1.21227 * 125.41325 * 179.97438 * 14 13 12 16 16 N 1.33961 * 109.17017 * 359.97438 * 14 13 12 17 17 C 1.46503 * 122.78335 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.46972 * 90.02683 * 17 16 14 19 19 C 1.50707 * 109.47076 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99632 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31524 * 119.99745 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00296 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46967 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47397 * 119.99772 * 23 21 19 26 26 H 1.48498 * 109.47342 * 240.00023 * 23 21 19 27 27 C 1.34048 * 114.43054 * 0.02562 * 16 14 13 28 28 O 1.21226 * 125.49846 * 180.02562 * 27 16 14 29 29 C 1.47031 * 120.68548 * 174.89485 * 8 6 2 30 30 H 1.08997 * 109.47519 * 301.38846 * 1 2 3 31 31 H 1.09000 * 109.46948 * 61.39267 * 1 2 3 32 32 H 1.09000 * 109.46850 * 181.38909 * 1 2 3 33 33 H 1.09000 * 109.56734 * 6.09451 * 9 8 6 34 34 H 1.08994 * 109.66980 * 245.79082 * 9 8 6 35 35 H 1.09007 * 109.50242 * 295.17931 * 10 9 8 36 36 H 1.08992 * 109.53428 * 175.08458 * 10 9 8 37 37 H 1.09002 * 109.44372 * 59.61573 * 11 10 9 38 38 H 1.08997 * 109.44446 * 179.54888 * 11 10 9 39 39 H 1.09001 * 110.64487 * 237.26011 * 13 12 11 40 40 H 1.09001 * 110.64212 * 0.16154 * 13 12 11 41 41 H 1.09000 * 109.46834 * 210.02937 * 17 16 14 42 42 H 1.09003 * 109.46873 * 330.02446 * 17 16 14 43 43 H 1.09000 * 109.47549 * 299.99817 * 18 17 16 44 44 H 1.09003 * 109.47514 * 60.00156 * 18 17 16 45 45 H 0.96998 * 119.99487 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.58291 * 352.53327 * 29 8 6 47 47 H 1.09002 * 109.58378 * 112.79507 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2019 5 7 2.3993 -1.2294 2.1295 6 6 2.0323 -0.7104 -1.2304 7 8 2.3199 -1.8874 -1.1762 8 7 2.1622 -0.0379 -2.3911 9 6 1.7146 1.3572 -2.5034 10 6 2.8765 2.2104 -3.0218 11 6 3.3914 1.6184 -4.3368 12 6 3.8832 0.1952 -4.0993 13 6 4.4548 -0.3967 -5.3979 14 6 5.9001 -0.6817 -5.0463 15 8 6.7240 -1.1611 -5.7953 16 7 6.1234 -0.3197 -3.7760 17 6 7.4284 -0.4670 -3.1268 18 6 8.2514 0.8047 -3.3420 19 6 9.5937 0.6535 -2.6737 20 1 9.8356 -0.2586 -2.1485 21 6 10.5127 1.6796 -2.7328 22 7 10.2181 2.7902 -3.3729 23 14 12.1767 1.4920 -1.9052 24 1 12.2599 0.1581 -1.2577 25 1 13.2522 1.6173 -2.9215 26 1 12.3408 2.5515 -0.8776 27 6 5.0533 0.1873 -3.1477 28 8 5.0299 0.5773 -2.0001 29 6 2.7549 -0.6848 -3.5709 30 1 -0.3634 0.5352 0.8772 31 1 -0.3633 0.4921 -0.9022 32 1 -0.3633 -1.0274 0.0249 33 1 1.4033 1.7207 -1.5241 34 1 0.8776 1.4191 -3.1988 35 1 3.6806 2.2160 -2.2858 36 1 2.5320 3.2303 -3.1921 37 1 2.5846 1.6060 -5.0697 38 1 4.2131 2.2283 -4.7122 39 1 3.9349 -1.3176 -5.6620 40 1 4.3900 0.3264 -6.2110 41 1 7.2864 -0.6316 -2.0587 42 1 7.9551 -1.3180 -3.5587 43 1 8.3934 0.9693 -4.4101 44 1 7.7247 1.6558 -2.9101 45 1 10.8648 3.5119 -3.4148 46 1 3.1526 -1.6604 -3.2915 47 1 1.9935 -0.8079 -4.3412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269265683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:32 Heat of formation + Delta-G solvation = -102.516192 kcal Electronic energy + Delta-G solvation = -31883.132339 eV Core-core repulsion = 27644.007029 eV Total energy + Delta-G solvation = -4239.125310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.33534 -41.33005 -39.76121 -38.47877 -37.64391 -37.05340 -36.03447 -35.00197 -33.96386 -33.08447 -31.79148 -28.99847 -27.14712 -27.05977 -25.71846 -25.36457 -23.72952 -23.14164 -22.21356 -21.34561 -19.66294 -18.92909 -18.67604 -18.38156 -17.79280 -17.65727 -17.33989 -16.69828 -16.57973 -16.23648 -15.89570 -15.60911 -15.37233 -15.07226 -15.03193 -14.94989 -14.85382 -14.55773 -14.38354 -14.14904 -13.92024 -13.82397 -13.72729 -13.45620 -13.38082 -13.15064 -12.97410 -12.88459 -12.77364 -12.73231 -12.44866 -12.22171 -12.15888 -11.97642 -11.89273 -11.74528 -11.55668 -11.24906 -10.85527 -10.81041 -10.69396 -10.61331 -9.65261 -8.33418 -6.46496 0.49745 1.22364 1.33270 1.34418 1.47551 1.54478 1.58724 1.68491 1.76920 2.10133 2.33057 2.77187 2.99656 3.00520 3.13431 3.40520 3.43128 3.65118 3.90343 3.94083 4.01969 4.05128 4.16605 4.26009 4.31761 4.40677 4.46188 4.59494 4.61669 4.64977 4.71894 4.79350 4.81817 4.84868 4.92093 4.98057 5.13404 5.21784 5.24371 5.28831 5.30706 5.47804 5.57439 5.62896 5.93313 6.00721 6.25510 6.38792 6.44672 6.64585 6.78629 7.01985 7.23270 8.79368 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.003346 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.055410 B = 8365.110505 C = 9537.082868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.011 4.011 3 H 0.169 0.831 4 C 0.237 3.763 5 N -0.479 5.479 6 C 0.526 3.474 7 O -0.585 6.585 8 N -0.596 5.596 9 C 0.100 3.900 10 C -0.153 4.153 11 C -0.099 4.099 12 C -0.097 4.097 13 C -0.127 4.127 14 C 0.511 3.489 15 O -0.526 6.526 16 N -0.584 5.584 17 C 0.114 3.886 18 C 0.035 3.965 19 C -0.552 4.552 20 H 0.061 0.939 21 C 0.006 3.994 22 N -0.927 5.927 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.519 3.481 28 O -0.503 6.503 29 C 0.134 3.866 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.042 0.958 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.058 0.942 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.069 0.931 42 H 0.076 0.924 43 H -0.008 1.008 44 H -0.009 1.009 45 H 0.268 0.732 46 H 0.067 0.933 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.095 1.815 -5.202 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 H 0.186 0.814 4 C -0.081 4.081 5 N -0.155 5.155 6 C 0.313 3.687 7 O -0.465 6.465 8 N -0.327 5.327 9 C -0.021 4.021 10 C -0.191 4.191 11 C -0.136 4.136 12 C -0.101 4.101 13 C -0.166 4.166 14 C 0.302 3.698 15 O -0.401 6.401 16 N -0.325 5.325 17 C -0.007 4.007 18 C -0.003 4.003 19 C -0.590 4.590 20 H 0.079 0.921 21 C -0.193 4.193 22 N -0.566 5.566 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.197 1.197 26 H -0.199 1.199 27 C 0.310 3.690 28 O -0.375 6.375 29 C 0.012 3.988 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.178 0.822 40 H 0.177 0.823 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.867 0.513 -3.578 29.093 hybrid contribution 2.230 0.018 0.511 2.288 sum -26.638 0.530 -3.067 26.819 Atomic orbital electron populations 1.21891 0.85735 1.04445 1.07148 1.19286 1.01495 1.00373 0.82384 0.81443 1.29061 0.92256 0.92604 0.94169 1.81194 1.09738 1.10036 1.14507 1.20356 0.77161 0.86448 0.84763 1.90753 1.52254 1.18281 1.85249 1.48029 1.59902 1.14987 1.09802 1.22340 0.97176 0.77160 1.05376 1.22143 0.98938 1.01216 0.96833 1.21574 1.02893 0.89126 1.00012 1.21640 0.93242 1.02150 0.93058 1.22744 0.87824 1.07524 0.98482 1.21957 0.93222 0.74759 0.79825 1.90738 1.53554 1.42519 1.53281 1.47303 1.13055 1.56495 1.15652 1.21663 0.81654 1.00286 0.97099 1.19053 0.94278 0.91750 0.95232 1.21475 1.00354 1.02157 1.35023 0.92068 1.25977 1.03079 0.94553 0.95690 1.70093 1.37169 1.06240 1.43084 0.85309 0.78233 0.78647 0.78338 1.18840 1.19723 1.19868 1.21532 0.85332 0.74279 0.87867 1.90665 1.84405 1.44170 1.18287 1.21613 0.94310 0.94196 0.88730 0.88338 0.86060 0.92292 0.87120 0.85344 0.93888 0.86975 0.84182 0.92326 0.82185 0.82295 0.91236 0.90599 0.98986 0.99050 0.92364 0.91442 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 8.93 71.98 0.64 0.00 16 2 C -0.01 -0.16 2.24 -13.35 -0.03 -0.19 16 3 H 0.17 1.33 6.50 -2.39 -0.02 1.31 16 4 C 0.24 6.06 14.02 89.44 1.25 7.32 16 5 N -0.48 -15.84 18.54 20.01 0.37 -15.47 16 6 C 0.53 10.73 6.78 87.66 0.59 11.32 16 7 O -0.59 -18.44 15.70 -3.02 -0.05 -18.49 16 8 N -0.60 -7.96 2.53 -819.89 -2.08 -10.04 16 9 C 0.10 0.41 5.83 86.36 0.50 0.91 16 10 C -0.15 -1.58 5.81 30.70 0.18 -1.40 16 11 C -0.10 -1.03 4.52 30.45 0.14 -0.89 16 12 C -0.10 -1.64 0.69 -52.98 -0.04 -1.68 16 13 C -0.13 -1.94 6.30 30.34 0.19 -1.74 16 14 C 0.51 16.59 8.09 88.02 0.71 17.30 16 15 O -0.53 -21.46 17.48 -2.87 -0.05 -21.51 16 16 N -0.58 -22.18 2.56 -756.76 -1.94 -24.11 16 17 C 0.11 5.43 5.50 86.38 0.47 5.90 16 18 C 0.03 1.97 5.30 29.85 0.16 2.13 16 19 C -0.55 -33.36 9.11 25.60 0.23 -33.13 16 20 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 21 C 0.01 0.35 5.46 84.65 0.46 0.81 16 22 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 23 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 24 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.52 16.89 6.49 87.81 0.57 17.46 16 28 O -0.50 -19.63 14.97 -2.86 -0.04 -19.67 16 29 C 0.13 1.78 4.92 86.12 0.42 2.21 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.12 -0.30 7.36 -2.39 -0.02 -0.32 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.00 5.09 -2.39 -0.01 -0.01 16 34 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.04 0.90 5.96 -2.38 -0.01 0.89 16 36 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.16 1.27 7.71 -2.39 -0.02 1.25 16 40 H 0.16 1.44 7.72 -2.39 -0.02 1.43 16 41 H 0.07 3.38 7.84 -2.39 -0.02 3.36 16 42 H 0.08 3.61 7.83 -2.39 -0.02 3.59 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.07 1.38 7.04 -2.39 -0.02 1.37 16 47 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -101.25 388.29 6.00 -95.25 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: 1.00 Total: -2.99 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 6.47 Total: 26.34 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.36 Total: -106.96 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: -0.14 Total: -59.67 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -101.25 6.00 -95.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269265683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.266 kcal (2) G-P(sol) polarization free energy of solvation -101.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds