Wall clock time and date at job start Wed Apr 1 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46962 * 2 1 4 4 O 1.42897 * 109.47529 * 120.00077 * 2 1 3 5 5 C 1.50698 * 109.47044 * 240.00053 * 2 1 3 6 6 O 1.21284 * 120.00053 * 257.16471 * 5 2 1 7 7 N 1.34775 * 120.00129 * 77.16800 * 5 2 1 8 8 C 1.47038 * 120.79512 * 174.70911 * 7 5 2 9 9 C 1.53379 * 109.11100 * 115.30187 * 8 7 5 10 10 C 1.50811 * 108.80602 * 45.36192 * 9 8 7 11 11 C 1.39332 * 127.47386 * 162.51890 * 10 9 8 12 12 C 1.38042 * 107.02661 * 179.97438 * 11 10 9 13 13 C 1.46680 * 126.20463 * 179.84866 * 12 11 10 14 14 O 1.21690 * 120.00168 * 359.71880 * 13 12 11 15 15 N 1.34775 * 119.99601 * 179.71498 * 13 12 11 16 16 C 1.47581 * 134.49107 * 180.02562 * 15 13 12 17 17 C 1.53938 * 86.11704 * 155.35946 * 16 15 13 18 18 C 1.50705 * 113.74103 * 137.95443 * 17 16 15 19 19 H 1.07992 * 120.00356 * 1.64433 * 18 17 16 20 20 C 1.37881 * 119.99749 * 181.92245 * 18 17 16 21 21 N 1.31514 * 120.00039 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99960 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46966 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47128 * 119.99992 * 22 20 18 25 25 H 1.48498 * 109.47417 * 240.00194 * 22 20 18 26 26 C 1.47812 * 134.46014 * 359.86885 * 15 13 12 27 27 N 1.37822 * 107.58899 * 359.58963 * 12 11 10 28 28 H 0.96997 * 125.71397 * 180.32743 * 27 12 11 29 29 C 1.35018 * 108.57921 * 0.36417 * 27 12 11 30 30 C 1.47365 * 120.79455 * 354.68778 * 7 5 2 31 31 H 1.09000 * 109.46860 * 186.49430 * 1 2 3 32 32 H 1.09000 * 109.46567 * 306.49519 * 1 2 3 33 33 H 1.09000 * 109.47229 * 66.48788 * 1 2 3 34 34 H 0.96702 * 113.99961 * 59.99136 * 4 2 1 35 35 H 1.09002 * 109.52777 * 235.18986 * 8 7 5 36 36 H 1.08996 * 109.53060 * 355.41284 * 8 7 5 37 37 H 1.08998 * 109.58174 * 165.16019 * 9 8 7 38 38 H 1.08997 * 109.57797 * 285.43195 * 9 8 7 39 39 H 1.08007 * 126.49294 * 359.78835 * 11 10 9 40 40 H 1.08998 * 113.77050 * 41.05184 * 16 15 13 41 41 H 1.09007 * 113.76900 * 269.66201 * 16 15 13 42 42 H 1.09000 * 113.74163 * 269.14882 * 17 16 15 43 43 H 0.97000 * 119.99618 * 179.97438 * 21 20 18 44 44 H 1.09004 * 113.76720 * 90.38003 * 26 15 13 45 45 H 1.09000 * 113.83689 * 318.92168 * 26 15 13 46 46 H 1.08992 * 109.89711 * 105.06963 * 30 7 5 47 47 H 1.09002 * 109.89187 * 343.95995 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0323 -0.7104 -1.2305 6 8 2.4545 -1.8443 -1.1462 7 7 2.0126 -0.0857 -2.4245 8 6 2.6033 -0.7166 -3.6141 9 6 1.4944 -1.0005 -4.6349 10 6 0.6111 0.2170 -4.7445 11 6 -0.2873 0.5235 -5.7644 12 6 -0.8699 1.7322 -5.4402 13 6 -1.8785 2.4472 -6.2295 14 8 -2.2723 1.9789 -7.2813 15 7 -2.3690 3.6229 -5.7896 16 6 -3.3605 4.5874 -6.3043 17 6 -3.5460 5.0195 -4.8385 18 6 -3.6504 6.5116 -4.6544 19 1 -3.6198 7.1652 -5.5135 20 6 -3.7791 7.0426 -3.3884 21 7 -3.8113 6.2469 -2.3418 22 14 -3.9078 8.8921 -3.1600 23 1 -3.8460 9.5599 -4.4850 24 1 -5.1963 9.2207 -2.4991 25 1 -2.7827 9.3659 -2.3146 26 6 -2.1317 4.4624 -4.5964 27 7 -0.3364 2.1423 -4.2374 28 1 -0.5658 2.9578 -3.7649 29 6 0.5598 1.2195 -3.8273 30 6 1.3979 1.2458 -2.5693 31 1 -0.3633 -1.0211 0.1162 32 1 -0.3632 0.6112 0.8262 33 1 -0.3634 0.4100 -0.9423 34 1 1.7210 -1.5952 1.2329 35 1 3.3407 -0.0454 -4.0542 36 1 3.0846 -1.6522 -3.3292 37 1 1.9388 -1.2180 -5.6061 38 1 0.9033 -1.8545 -4.3042 39 1 -0.4876 -0.0705 -6.6440 40 1 -4.2435 4.1196 -6.7397 41 1 -2.9310 5.3620 -6.9398 42 1 -4.3290 4.4710 -4.3151 43 1 -3.9015 6.6206 -1.4512 44 1 -1.3403 5.2002 -4.7286 45 1 -2.0355 3.8949 -3.6707 46 1 2.1747 2.0053 -2.6575 47 1 0.7663 1.4585 -1.7068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270862458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:05 Heat of formation + Delta-G solvation = -57.177316 kcal Electronic energy + Delta-G solvation = -30764.236254 eV Core-core repulsion = 26527.076985 eV Total energy + Delta-G solvation = -4237.159269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.80255 -41.31627 -40.63618 -38.65101 -37.93838 -37.11412 -34.67430 -34.23449 -32.06161 -31.77741 -30.63630 -30.31703 -27.68414 -27.04422 -26.46409 -25.42115 -23.93313 -23.09351 -21.59491 -21.36708 -20.56716 -19.67449 -18.91564 -18.53812 -18.42020 -17.75349 -17.38492 -16.75883 -16.70347 -16.40132 -16.22452 -16.04038 -15.95501 -15.41530 -15.20472 -14.90136 -14.63094 -14.47641 -14.09751 -13.99025 -13.93771 -13.92316 -13.48522 -13.40517 -13.17293 -13.11533 -12.98728 -12.82880 -12.81712 -12.61596 -12.48748 -12.25949 -12.15611 -11.76138 -11.54781 -11.20029 -10.87629 -10.64822 -10.57455 -10.02645 -9.83637 -9.69207 -9.02814 -8.18330 -6.28683 0.35344 1.33616 1.45689 1.51290 1.52468 1.60012 1.63419 1.85735 2.12052 2.30640 2.45991 3.12993 3.17879 3.38130 3.47262 3.54363 3.87814 3.90332 3.99023 4.02638 4.11027 4.15580 4.26541 4.34709 4.36271 4.46319 4.50178 4.59896 4.62282 4.66812 4.71573 4.75994 4.79603 4.82776 4.90613 5.03989 5.07441 5.11310 5.14538 5.34258 5.57493 5.70788 5.79715 5.82445 6.14300 6.18996 6.34831 6.54861 6.73467 6.79215 6.93126 7.05424 7.41674 8.91284 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.002964 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.139790 B = 9445.284036 C =11584.340268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.092 3.908 3 H 0.145 0.855 4 O -0.554 6.554 5 C 0.493 3.507 6 O -0.570 6.570 7 N -0.601 5.601 8 C 0.110 3.890 9 C -0.054 4.054 10 C -0.175 4.175 11 C -0.108 4.108 12 C -0.061 4.061 13 C 0.593 3.407 14 O -0.589 6.589 15 N -0.642 5.642 16 C 0.109 3.891 17 C 0.028 3.972 18 C -0.530 4.530 19 H 0.064 0.936 20 C 0.028 3.972 21 N -0.913 5.913 22 Si 0.953 3.047 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.278 1.278 26 C 0.112 3.888 27 N -0.514 5.514 28 H 0.425 0.575 29 C 0.035 3.965 30 C 0.171 3.829 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.392 0.608 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.144 0.856 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.266 0.734 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.122 0.878 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.098 -9.577 4.274 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.029 3.971 3 H 0.163 0.837 4 O -0.361 6.361 5 C 0.282 3.718 6 O -0.449 6.449 7 N -0.335 5.335 8 C -0.012 4.012 9 C -0.092 4.092 10 C -0.181 4.181 11 C -0.135 4.135 12 C -0.174 4.174 13 C 0.386 3.614 14 O -0.472 6.472 15 N -0.375 5.375 16 C -0.013 4.013 17 C 0.009 3.991 18 C -0.568 4.568 19 H 0.082 0.918 20 C -0.173 4.173 21 N -0.551 5.551 22 Si 0.780 3.220 23 H -0.193 1.193 24 H -0.212 1.212 25 H -0.204 1.204 26 C -0.010 4.010 27 N -0.113 5.113 28 H 0.267 0.733 29 C -0.085 4.085 30 C 0.048 3.952 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.162 0.838 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.375 -9.851 4.096 17.109 hybrid contribution -0.976 0.707 -0.104 1.209 sum 12.400 -9.144 3.992 15.916 Atomic orbital electron populations 1.22531 0.92799 1.04205 1.04519 1.22033 0.95285 0.97730 0.82016 0.83743 1.86565 1.77767 1.30831 1.40906 1.22062 0.77569 0.86428 0.85780 1.90686 1.48826 1.19396 1.86041 1.48103 1.57413 1.18940 1.08998 1.21760 0.95257 0.99900 0.84262 1.20383 0.94965 0.93453 1.00433 1.19327 1.03779 0.99146 0.95889 1.21118 0.97764 0.94248 1.00407 1.20211 1.05569 1.00098 0.91546 1.17165 0.80159 0.80119 0.83994 1.90743 1.62479 1.68886 1.25075 1.50415 1.42356 1.18729 1.26022 1.23444 0.90036 0.88440 0.99363 1.20356 0.92678 0.95923 0.90178 1.21256 1.51207 0.91349 0.93009 0.91756 1.25639 0.94033 1.01843 0.95798 1.70020 1.49884 1.36329 0.98860 0.85574 0.77509 0.80723 0.78243 1.19251 1.21242 1.20377 1.23658 1.01841 0.90176 0.85328 1.41962 1.31450 1.20434 1.17406 0.73272 1.20816 0.96560 0.91719 0.99405 1.20624 0.96041 0.85137 0.93428 0.91625 0.88930 0.90670 0.75772 0.88783 0.89072 0.88210 0.91576 0.83805 0.91808 0.89531 0.94450 0.92540 0.89346 0.91317 0.86078 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.11 71.98 0.66 -1.71 16 2 C 0.09 1.34 3.16 29.85 0.09 1.43 16 3 H 0.15 1.46 7.44 -2.39 -0.02 1.44 16 4 O -0.55 -9.86 13.10 -130.53 -1.71 -11.57 16 5 C 0.49 9.50 6.99 87.66 0.61 10.11 16 6 O -0.57 -15.11 15.76 15.41 0.24 -14.86 16 7 N -0.60 -9.80 2.94 -820.93 -2.41 -12.21 16 8 C 0.11 1.75 6.36 86.40 0.55 2.30 16 9 C -0.05 -0.96 6.43 30.01 0.19 -0.77 16 10 C -0.18 -4.04 5.94 -20.09 -0.12 -4.16 16 11 C -0.11 -3.14 10.62 22.49 0.24 -2.91 16 12 C -0.06 -1.96 7.01 40.36 0.28 -1.68 16 13 C 0.59 23.33 8.02 86.45 0.69 24.03 16 14 O -0.59 -26.84 17.61 -4.32 -0.08 -26.92 16 15 N -0.64 -24.62 3.61 -840.98 -3.04 -27.66 16 16 C 0.11 4.29 8.39 86.48 0.73 5.01 16 17 C 0.03 1.21 3.60 -10.89 -0.04 1.18 16 18 C -0.53 -24.96 8.77 25.60 0.22 -24.74 16 19 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 20 C 0.03 1.33 5.46 84.66 0.46 1.79 16 21 N -0.91 -45.53 13.29 21.45 0.28 -45.24 16 22 Si 0.95 38.20 29.54 68.60 2.03 40.23 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 26 C 0.11 4.12 6.94 86.43 0.60 4.72 16 27 N -0.51 -12.88 5.87 -171.19 -1.01 -13.88 16 28 H 0.42 9.91 5.77 -92.71 -0.53 9.38 16 29 C 0.04 0.73 7.12 41.70 0.30 1.03 16 30 C 0.17 2.27 6.08 85.62 0.52 2.79 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 0.99 6.07 -2.39 -0.01 0.98 16 34 H 0.39 5.56 8.67 -74.06 -0.64 4.92 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.61 7.03 -2.39 -0.02 1.59 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.09 3.22 8.09 -2.38 -0.02 3.21 16 42 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.27 12.61 8.31 -92.71 -0.77 11.84 16 44 H 0.09 3.11 8.09 -2.38 -0.02 3.09 16 45 H 0.07 2.36 6.51 -2.39 -0.02 2.34 16 46 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.12 1.21 4.47 -2.39 -0.01 1.20 16 Total: -1.00 -66.58 384.49 0.16 -66.42 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.14 Total: 27.27 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 5.99 Total: 18.42 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -6.17 Total: -99.00 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -1.54 Total: -53.35 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -66.58 0.16 -66.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270862458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.245 kcal (2) G-P(sol) polarization free energy of solvation -66.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds