Wall clock time and date at job start Wed Apr 1 2020 04:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47494 * 2 1 4 4 N 1.46504 * 109.46684 * 119.99728 * 2 1 3 5 5 C 1.36935 * 119.99953 * 274.99844 * 4 2 1 6 6 H 1.08003 * 120.00286 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00040 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00345 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99808 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47007 * 90.00521 * 9 7 5 11 11 H 1.48498 * 109.47302 * 210.00272 * 9 7 5 12 12 H 1.48496 * 109.47388 * 330.00455 * 9 7 5 13 13 C 1.52994 * 109.47488 * 239.99659 * 2 1 3 14 14 H 1.09000 * 109.55138 * 64.87240 * 13 2 1 15 15 C 1.53294 * 109.51381 * 185.00364 * 13 2 1 16 16 N 1.47155 * 108.38302 * 172.22875 * 15 13 2 17 17 C 1.34777 * 120.98487 * 129.44211 * 16 15 13 18 18 O 1.21358 * 119.99661 * 352.05174 * 17 16 15 19 19 C 1.49347 * 120.00450 * 172.05319 * 17 16 15 20 20 O 1.21377 * 119.99917 * 353.48458 * 19 17 16 21 21 N 1.34777 * 120.00413 * 173.48863 * 19 17 16 22 22 C 1.39722 * 119.99894 * 183.49367 * 21 19 17 23 23 C 1.38932 * 120.07313 * 144.31905 * 22 21 19 24 24 C 1.38097 * 119.92437 * 179.97438 * 23 22 21 25 25 C 1.38301 * 120.07074 * 0.02562 * 24 23 22 26 26 C 1.38290 * 120.15686 * 0.25347 * 25 24 23 27 27 C 1.38093 * 120.07290 * 359.49041 * 26 25 24 28 28 C 1.47155 * 118.03519 * 309.70899 * 16 15 13 29 29 C 1.52888 * 108.60371 * 50.23242 * 28 16 15 30 30 O 1.42963 * 109.29704 * 307.93109 * 29 28 16 31 31 H 1.08999 * 109.47494 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47481 * 299.99987 * 1 2 3 33 33 H 1.09004 * 109.47066 * 60.00526 * 1 2 3 34 34 H 0.97000 * 120.00289 * 95.00206 * 4 2 1 35 35 H 0.96998 * 119.99916 * 179.97438 * 8 7 5 36 36 H 1.08991 * 109.68406 * 52.50533 * 15 13 2 37 37 H 1.09005 * 109.67740 * 291.94645 * 15 13 2 38 38 H 0.97001 * 119.99747 * 3.48923 * 21 19 17 39 39 H 1.08003 * 120.03932 * 359.95860 * 23 22 21 40 40 H 1.07998 * 119.96409 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.91696 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.96395 * 179.72363 * 26 25 24 43 43 H 1.07996 * 120.04043 * 180.27413 * 27 26 25 44 44 H 1.09000 * 109.67798 * 170.01040 * 28 16 15 45 45 H 1.08997 * 109.68133 * 290.56829 * 28 16 15 46 46 H 1.08994 * 109.57839 * 187.92243 * 29 28 16 47 47 H 1.08995 * 109.36393 * 67.81344 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0074 2.3758 6 1 1.8918 1.0404 2.4244 7 6 2.6121 -0.6616 3.5092 8 7 2.7373 -0.0051 4.6431 9 14 3.0562 -2.4741 3.4254 10 1 4.4888 -2.6163 3.0611 11 1 2.8171 -3.1040 4.7487 12 1 2.2160 -3.1428 2.3998 13 6 2.0400 -0.7213 -1.2491 14 1 1.7504 -0.1606 -2.1379 15 6 3.5678 -0.8319 -1.1886 16 7 4.0155 -1.6877 -2.2988 17 6 4.9960 -1.2868 -3.1321 18 8 5.4238 -0.1531 -3.0646 19 6 5.5561 -2.2376 -4.1384 20 8 5.2143 -3.4022 -4.1289 21 7 6.4412 -1.8026 -5.0570 22 6 6.9095 -2.6743 -6.0435 23 6 7.1656 -2.2024 -7.3249 24 6 7.6289 -3.0666 -8.2974 25 6 7.8376 -4.4003 -7.9970 26 6 7.5782 -4.8745 -6.7240 27 6 7.1198 -4.0148 -5.7454 28 6 3.3568 -2.9916 -2.4761 29 6 1.8430 -2.7781 -2.4706 30 8 1.4751 -2.0333 -1.3071 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2489 -1.6318 1.1528 35 1 3.0606 -0.4624 5.4351 36 1 3.8664 -1.2761 -0.2392 37 1 4.0117 0.1589 -1.2867 38 1 6.7530 -0.8844 -5.0334 39 1 7.0023 -1.1611 -7.5603 40 1 7.8278 -2.7006 -9.2938 41 1 8.1996 -5.0740 -8.7595 42 1 7.7380 -5.9176 -6.4941 43 1 6.9217 -4.3848 -4.7503 44 1 3.6612 -3.4304 -3.4263 45 1 3.6338 -3.6569 -1.6584 46 1 1.3379 -3.7439 -2.4594 47 1 1.5528 -2.2249 -3.3638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276777815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:29 Heat of formation + Delta-G solvation = -38.259965 kcal Electronic energy + Delta-G solvation = -30806.046700 eV Core-core repulsion = 26569.707749 eV Total energy + Delta-G solvation = -4236.338951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55738 -40.09500 -38.89884 -38.24652 -35.98935 -35.36599 -34.48053 -32.31605 -31.32543 -30.53864 -30.18476 -28.94232 -28.26125 -25.42072 -24.16107 -23.33935 -23.24246 -22.65292 -21.53050 -20.21250 -19.78781 -18.45013 -17.85302 -17.71315 -17.13344 -16.48857 -16.43219 -16.26460 -15.71030 -15.41309 -15.00637 -14.74687 -14.53408 -14.37474 -14.26795 -14.16297 -13.77537 -13.60458 -13.32038 -13.19416 -12.88949 -12.69294 -12.41921 -12.12784 -11.98219 -11.71112 -11.59461 -11.42742 -11.32646 -10.95359 -10.86958 -10.80796 -10.61515 -10.39606 -10.09098 -9.99520 -9.57388 -9.49702 -9.29316 -8.96505 -8.67984 -8.59734 -7.25874 -5.75949 -3.11271 0.63191 1.00163 1.27132 1.93774 2.82907 3.07792 3.39198 3.41822 3.45465 3.47320 3.86521 3.90227 4.49470 4.55624 4.61027 4.73393 4.76744 4.95043 4.98432 5.02568 5.09460 5.11832 5.17728 5.18985 5.47273 5.50116 5.56804 5.60076 5.61910 5.75062 5.76838 5.85962 5.90530 6.01796 6.08973 6.11509 6.15719 6.24494 6.28435 6.46987 6.56746 6.65176 6.70974 6.98855 7.05728 7.30899 7.33201 7.63292 8.00152 8.43135 9.22004 9.94190 10.14802 11.42217 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.002480 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.508712 B =11287.573043 C =11652.450587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.070 0.930 4 N -0.743 5.743 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.878 3.122 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.075 3.925 14 H 0.062 0.938 15 C 0.081 3.919 16 N -0.577 5.577 17 C 0.508 3.492 18 O -0.518 6.518 19 C 0.513 3.487 20 O -0.493 6.493 21 N -0.645 5.645 22 C 0.138 3.862 23 C -0.139 4.139 24 C -0.103 4.103 25 C -0.132 4.132 26 C -0.102 4.102 27 C -0.118 4.118 28 C 0.039 3.961 29 C 0.047 3.953 30 O -0.364 6.364 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.366 0.634 35 H 0.259 0.741 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.424 0.576 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -7.566 -27.933 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.088 0.912 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.708 3.292 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.016 3.984 14 H 0.080 0.920 15 C -0.041 4.041 16 N -0.310 5.310 17 C 0.289 3.711 18 O -0.394 6.394 19 C 0.296 3.704 20 O -0.368 6.368 21 N -0.291 5.291 22 C 0.045 3.955 23 C -0.159 4.159 24 C -0.121 4.121 25 C -0.150 4.150 26 C -0.120 4.120 27 C -0.138 4.138 28 C -0.083 4.083 29 C -0.031 4.031 30 O -0.282 6.282 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.200 0.800 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.262 0.738 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.099 0.901 46 H 0.124 0.876 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.265 -7.642 -27.484 29.437 hybrid contribution 0.613 -0.840 -0.010 1.040 sum 7.878 -8.482 -27.494 29.831 Atomic orbital electron populations 1.22290 0.97824 1.01704 1.00153 1.20244 0.93131 0.94859 0.83937 0.91186 1.42784 1.79427 1.09619 1.06878 1.19066 1.36897 0.95492 0.85769 0.89103 1.24642 1.01448 0.97320 0.95540 1.69697 1.52587 1.35568 1.00234 0.86633 0.78455 0.87095 0.77004 1.21217 1.21798 1.19851 1.22971 0.90921 0.84436 1.00094 0.91994 1.22663 0.95806 0.96898 0.88694 1.48087 1.34224 1.19879 1.28851 1.19687 0.81600 0.87331 0.82443 1.90788 1.59826 1.18779 1.70045 1.20449 0.79497 0.88512 0.81922 1.90561 1.57392 1.17909 1.70937 1.43185 1.42411 1.15744 1.27772 1.17771 0.98994 0.90688 0.88093 1.20970 1.03032 1.00796 0.91091 1.20970 0.98804 0.93408 0.98928 1.21213 1.01062 0.95777 0.96998 1.21097 0.98195 0.99784 0.92971 1.21321 0.99171 0.92176 1.01125 1.23378 0.93615 0.84165 1.07164 1.22905 0.93568 0.97526 0.89102 1.88089 1.71086 1.27074 1.41970 0.92535 0.92277 0.94498 0.80043 0.93092 0.88384 0.87649 0.73775 0.85399 0.85468 0.85820 0.85491 0.84314 0.84540 0.90065 0.87633 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.30 37.16 0.35 -2.47 16 2 C 0.19 3.52 2.80 -67.93 -0.19 3.33 16 3 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 4 N -0.74 -17.11 4.05 -53.43 -0.22 -17.33 16 5 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 9 Si 0.88 22.21 27.73 -169.99 -4.71 17.49 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.60 6.52 56.52 0.37 -6.23 16 13 C 0.08 1.19 2.57 -26.58 -0.07 1.12 16 14 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.08 1.30 5.84 -3.53 -0.02 1.28 16 16 N -0.58 -8.15 3.03 -173.07 -0.52 -8.67 16 17 C 0.51 6.96 7.75 -11.63 -0.09 6.87 16 18 O -0.52 -8.00 15.97 5.49 0.09 -7.91 16 19 C 0.51 6.02 7.57 -11.63 -0.09 5.93 16 20 O -0.49 -6.15 10.72 5.47 0.06 -6.09 16 21 N -0.64 -6.18 5.32 -10.30 -0.05 -6.24 16 22 C 0.14 1.29 6.28 -83.75 -0.53 0.76 16 23 C -0.14 -1.03 9.97 -39.38 -0.39 -1.43 16 24 C -0.10 -0.67 10.04 -39.61 -0.40 -1.07 16 25 C -0.13 -0.88 10.04 -39.54 -0.40 -1.28 16 26 C -0.10 -0.79 10.04 -39.62 -0.40 -1.19 16 27 C -0.12 -1.14 8.68 -39.38 -0.34 -1.48 16 28 C 0.04 0.48 6.10 -3.74 -0.02 0.45 16 29 C 0.05 0.56 6.97 37.10 0.26 0.82 16 30 O -0.36 -5.77 9.24 -35.23 -0.33 -6.09 16 31 H 0.06 1.03 7.57 -51.93 -0.39 0.64 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.37 8.55 4.94 -40.82 -0.20 8.35 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.10 1.81 6.94 -51.93 -0.36 1.45 16 37 H 0.11 1.73 7.07 -51.93 -0.37 1.36 16 38 H 0.42 3.43 8.30 -40.82 -0.34 3.09 16 39 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.14 1.49 6.30 -52.49 -0.33 1.15 16 44 H 0.14 1.58 4.51 -53.88 -0.24 1.34 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -33.01 381.78 -8.22 -41.23 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.47 Total: 11.36 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -2.58 Total: 4.91 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.02 Total: -60.65 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.18 Total: -20.10 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.01 -8.22 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.970 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds