Wall clock time and date at job start Wed Apr 1 2020 04:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47494 * 2 1 4 4 N 1.46504 * 109.46684 * 119.99728 * 2 1 3 5 5 C 1.36935 * 119.99953 * 274.99844 * 4 2 1 6 6 H 1.08003 * 120.00286 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00040 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00345 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99808 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47007 * 90.00521 * 9 7 5 11 11 H 1.48498 * 109.47302 * 210.00272 * 9 7 5 12 12 H 1.48496 * 109.47388 * 330.00455 * 9 7 5 13 13 C 1.52994 * 109.47488 * 239.99659 * 2 1 3 14 14 H 1.09000 * 109.55138 * 64.87240 * 13 2 1 15 15 C 1.53294 * 109.51381 * 185.00364 * 13 2 1 16 16 N 1.47155 * 108.38302 * 172.22875 * 15 13 2 17 17 C 1.34777 * 120.98487 * 129.44211 * 16 15 13 18 18 O 1.21358 * 119.99661 * 352.05174 * 17 16 15 19 19 C 1.49347 * 120.00450 * 172.05319 * 17 16 15 20 20 O 1.21377 * 119.99917 * 353.48458 * 19 17 16 21 21 N 1.34777 * 120.00413 * 173.48863 * 19 17 16 22 22 C 1.39722 * 119.99894 * 183.49367 * 21 19 17 23 23 C 1.38932 * 120.07313 * 144.31905 * 22 21 19 24 24 C 1.38097 * 119.92437 * 179.97438 * 23 22 21 25 25 C 1.38301 * 120.07074 * 0.02562 * 24 23 22 26 26 C 1.38290 * 120.15686 * 0.25347 * 25 24 23 27 27 C 1.38093 * 120.07290 * 359.49041 * 26 25 24 28 28 C 1.47155 * 118.03519 * 309.70899 * 16 15 13 29 29 C 1.52888 * 108.60371 * 50.23242 * 28 16 15 30 30 O 1.42963 * 109.29704 * 307.93109 * 29 28 16 31 31 H 1.08999 * 109.47494 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47481 * 299.99987 * 1 2 3 33 33 H 1.09004 * 109.47066 * 60.00526 * 1 2 3 34 34 H 0.97000 * 120.00289 * 95.00206 * 4 2 1 35 35 H 0.96998 * 119.99916 * 179.97438 * 8 7 5 36 36 H 1.08991 * 109.68406 * 52.50533 * 15 13 2 37 37 H 1.09005 * 109.67740 * 291.94645 * 15 13 2 38 38 H 0.97001 * 119.99747 * 3.48923 * 21 19 17 39 39 H 1.08003 * 120.03932 * 359.95860 * 23 22 21 40 40 H 1.07998 * 119.96409 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.91696 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.96395 * 179.72363 * 26 25 24 43 43 H 1.07996 * 120.04043 * 180.27413 * 27 26 25 44 44 H 1.09000 * 109.67798 * 170.01040 * 28 16 15 45 45 H 1.08997 * 109.68133 * 290.56829 * 28 16 15 46 46 H 1.08994 * 109.57839 * 187.92243 * 29 28 16 47 47 H 1.08995 * 109.36393 * 67.81344 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0074 2.3758 6 1 1.8918 1.0404 2.4244 7 6 2.6121 -0.6616 3.5092 8 7 2.7373 -0.0051 4.6431 9 14 3.0562 -2.4741 3.4254 10 1 4.4888 -2.6163 3.0611 11 1 2.8171 -3.1040 4.7487 12 1 2.2160 -3.1428 2.3998 13 6 2.0400 -0.7213 -1.2491 14 1 1.7504 -0.1606 -2.1379 15 6 3.5678 -0.8319 -1.1886 16 7 4.0155 -1.6877 -2.2988 17 6 4.9960 -1.2868 -3.1321 18 8 5.4238 -0.1531 -3.0646 19 6 5.5561 -2.2376 -4.1384 20 8 5.2143 -3.4022 -4.1289 21 7 6.4412 -1.8026 -5.0570 22 6 6.9095 -2.6743 -6.0435 23 6 7.1656 -2.2024 -7.3249 24 6 7.6289 -3.0666 -8.2974 25 6 7.8376 -4.4003 -7.9970 26 6 7.5782 -4.8745 -6.7240 27 6 7.1198 -4.0148 -5.7454 28 6 3.3568 -2.9916 -2.4761 29 6 1.8430 -2.7781 -2.4706 30 8 1.4751 -2.0333 -1.3071 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2489 -1.6318 1.1528 35 1 3.0606 -0.4624 5.4351 36 1 3.8664 -1.2761 -0.2392 37 1 4.0117 0.1589 -1.2867 38 1 6.7530 -0.8844 -5.0334 39 1 7.0023 -1.1611 -7.5603 40 1 7.8278 -2.7006 -9.2938 41 1 8.1996 -5.0740 -8.7595 42 1 7.7380 -5.9176 -6.4941 43 1 6.9217 -4.3848 -4.7503 44 1 3.6612 -3.4304 -3.4263 45 1 3.6338 -3.6569 -1.6584 46 1 1.3379 -3.7439 -2.4594 47 1 1.5528 -2.2249 -3.3638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276777815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:28 Heat of formation + Delta-G solvation = -61.077807 kcal Electronic energy + Delta-G solvation = -30807.036156 eV Core-core repulsion = 26569.707749 eV Total energy + Delta-G solvation = -4237.328407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49812 -41.04865 -39.85470 -39.20603 -37.36537 -36.49020 -35.51055 -34.23832 -32.08497 -31.87321 -30.88244 -30.55281 -29.35928 -26.51975 -25.46168 -24.97366 -23.94626 -23.56524 -22.45352 -21.37071 -21.06710 -19.90122 -19.21856 -18.64366 -18.09169 -17.61123 -17.48919 -17.09364 -16.63569 -16.60380 -16.33773 -16.03897 -15.79916 -15.47439 -15.16907 -15.15482 -14.90590 -14.64797 -14.49749 -14.30718 -14.23874 -13.90835 -13.73630 -13.57081 -13.28364 -12.87909 -12.61789 -12.60842 -12.49784 -12.41073 -12.24223 -12.09998 -11.83681 -11.76422 -11.65681 -11.51330 -11.22945 -11.00519 -10.46981 -9.89739 -9.82442 -9.29203 -9.26926 -8.00374 -5.31848 -0.18110 0.43800 0.48713 0.98471 1.36951 1.38580 1.46416 1.84444 2.13724 2.48642 2.71970 2.83400 2.99095 3.32512 3.49887 3.70945 3.87182 3.90136 3.96239 4.03454 4.08666 4.15978 4.29175 4.29591 4.40713 4.49265 4.51488 4.53797 4.61256 4.73996 4.77885 4.78952 4.92623 4.97878 5.04642 5.09272 5.21380 5.24635 5.26832 5.50253 5.58591 5.59828 5.75510 5.80429 5.98723 6.03286 6.15791 6.25557 6.42638 6.64684 7.10217 7.86469 8.06026 9.21171 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.002480 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.508712 B =11287.573043 C =11652.450587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.178 3.822 3 H 0.068 0.932 4 N -0.744 5.744 5 C -0.218 4.218 6 H 0.063 0.937 7 C -0.062 4.062 8 N -0.983 5.983 9 Si 0.944 3.056 10 H -0.283 1.283 11 H -0.298 1.298 12 H -0.254 1.254 13 C 0.089 3.911 14 H 0.087 0.913 15 C 0.085 3.915 16 N -0.579 5.579 17 C 0.507 3.493 18 O -0.539 6.539 19 C 0.517 3.483 20 O -0.503 6.503 21 N -0.632 5.632 22 C 0.115 3.885 23 C -0.139 4.139 24 C -0.103 4.103 25 C -0.130 4.130 26 C -0.111 4.111 27 C -0.138 4.138 28 C 0.041 3.959 29 C 0.045 3.955 30 O -0.383 6.383 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.430 0.570 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.074 0.926 46 H 0.130 0.870 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.604 -9.083 -31.830 33.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.070 3.930 3 H 0.086 0.914 4 N -0.388 5.388 5 C -0.350 4.350 6 H 0.081 0.919 7 C -0.254 4.254 8 N -0.634 5.634 9 Si 0.772 3.228 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.179 1.179 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.037 4.037 16 N -0.312 5.312 17 C 0.290 3.710 18 O -0.417 6.417 19 C 0.300 3.700 20 O -0.379 6.379 21 N -0.278 5.278 22 C 0.022 3.978 23 C -0.159 4.159 24 C -0.121 4.121 25 C -0.148 4.148 26 C -0.129 4.129 27 C -0.158 4.158 28 C -0.080 4.080 29 C -0.031 4.031 30 O -0.302 6.302 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.269 0.731 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.139 0.861 44 H 0.165 0.835 45 H 0.092 0.908 46 H 0.148 0.852 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.427 -9.169 -31.470 33.609 hybrid contribution 0.598 -0.318 1.024 1.228 sum 8.025 -9.486 -30.446 32.884 Atomic orbital electron populations 1.22133 0.96488 1.01546 1.00719 1.20489 0.93957 0.94905 0.83649 0.91435 1.42758 1.79676 1.09559 1.06820 1.19043 1.34221 0.94473 0.87219 0.91899 1.25366 1.02864 1.01768 0.95373 1.69863 1.55071 1.37427 1.01078 0.85564 0.78370 0.81950 0.76895 1.20938 1.22499 1.17898 1.22690 0.90254 0.84999 0.99081 0.89518 1.22398 0.96271 0.96620 0.88403 1.48111 1.34540 1.20209 1.28359 1.20047 0.81055 0.87369 0.82528 1.90772 1.60329 1.19824 1.70771 1.20008 0.80058 0.87914 0.82041 1.90552 1.58143 1.17942 1.71263 1.43083 1.41427 1.16121 1.27189 1.17971 1.00457 0.90614 0.88749 1.21241 1.02300 1.01984 0.90352 1.21368 0.97597 0.93226 0.99903 1.21575 0.99847 0.96425 0.96940 1.21327 0.98010 1.00331 0.93232 1.21322 1.00641 0.92883 1.00986 1.23477 0.93963 0.83159 1.07422 1.23154 0.93202 0.98412 0.88377 1.88050 1.71202 1.26960 1.43983 0.92966 0.94549 0.91083 0.80015 0.93545 0.91067 0.88417 0.73060 0.83600 0.82700 0.83297 0.84170 0.86095 0.83456 0.90809 0.85236 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.30 71.98 0.67 -4.38 16 2 C 0.18 6.53 2.80 44.99 0.13 6.66 16 3 H 0.07 2.51 8.08 -2.39 -0.02 2.49 16 4 N -0.74 -34.22 4.05 -322.94 -1.31 -35.53 16 5 C -0.22 -12.29 10.41 84.03 0.87 -11.41 16 6 H 0.06 3.84 8.06 -2.91 -0.02 3.81 16 7 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 8 N -0.98 -63.52 13.97 21.65 0.30 -63.21 16 9 Si 0.94 46.72 27.73 68.60 1.90 48.62 16 10 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 12 H -0.25 -11.65 6.52 99.48 0.65 -11.00 16 13 C 0.09 2.66 2.57 30.69 0.08 2.74 16 14 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.09 2.71 5.84 86.35 0.50 3.22 16 16 N -0.58 -15.79 3.03 -819.83 -2.48 -18.27 16 17 C 0.51 13.56 7.75 87.24 0.68 14.24 16 18 O -0.54 -16.47 15.97 -3.27 -0.05 -16.52 16 19 C 0.52 11.74 7.57 87.24 0.66 12.40 16 20 O -0.50 -12.14 10.72 -3.33 -0.04 -12.18 16 21 N -0.63 -11.54 5.32 -304.84 -1.62 -13.16 16 22 C 0.11 2.00 6.28 38.22 0.24 2.24 16 23 C -0.14 -1.73 9.97 22.40 0.22 -1.51 16 24 C -0.10 -1.00 10.04 22.25 0.22 -0.78 16 25 C -0.13 -1.35 10.04 22.30 0.22 -1.12 16 26 C -0.11 -1.54 10.04 22.25 0.22 -1.31 16 27 C -0.14 -2.57 8.68 22.40 0.19 -2.38 16 28 C 0.04 0.94 6.10 86.22 0.53 1.47 16 29 C 0.05 0.96 6.97 71.94 0.50 1.46 16 30 O -0.38 -11.23 9.24 -148.98 -1.38 -12.61 16 31 H 0.05 1.81 7.57 -2.39 -0.02 1.79 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.37 16.84 4.94 -92.71 -0.46 16.38 16 35 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.07 2.65 6.94 -2.39 -0.02 2.63 16 37 H 0.10 3.22 7.07 -2.38 -0.02 3.20 16 38 H 0.43 6.57 8.30 -92.71 -0.77 5.80 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 41 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 42 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.12 2.62 6.30 -2.91 -0.02 2.60 16 44 H 0.15 3.15 4.51 -33.21 -0.15 3.00 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -72.94 381.78 1.33 -71.60 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.41 Total: 32.98 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 6.41 Total: 18.28 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -5.11 Total: -130.17 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -1.46 Total: -41.31 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Total: -72.94 1.33 -71.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.524 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds