Wall clock time and date at job start Wed Apr 1 2020 04:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47235 * 2 1 4 4 C 1.50703 * 109.47204 * 119.99440 * 2 1 3 5 5 H 1.08008 * 119.99858 * 117.59361 * 4 2 1 6 6 C 1.37878 * 120.00502 * 297.60123 * 4 2 1 7 7 N 1.31509 * 120.00208 * 153.73898 * 6 4 2 8 8 Si 1.86799 * 119.99430 * 334.01413 * 6 4 2 9 9 H 1.48501 * 109.47288 * 179.72365 * 8 6 4 10 10 H 1.48501 * 109.47261 * 299.72565 * 8 6 4 11 11 H 1.48501 * 109.47410 * 59.72703 * 8 6 4 12 12 N 1.46496 * 109.47249 * 239.99452 * 2 1 3 13 13 C 1.46496 * 120.00233 * 300.00164 * 12 2 1 14 14 C 1.34779 * 120.00092 * 119.99701 * 12 2 1 15 15 O 1.21365 * 119.99673 * 5.24642 * 14 12 2 16 16 C 1.49358 * 120.00316 * 185.24043 * 14 12 2 17 17 O 1.21365 * 119.99941 * 4.33664 * 16 14 12 18 18 N 1.34775 * 119.99865 * 184.32846 * 16 14 12 19 19 C 1.39117 * 119.99682 * 184.59933 * 18 16 14 20 20 C 1.38898 * 120.17252 * 332.21339 * 19 18 16 21 21 C 1.38015 * 120.06660 * 179.97438 * 20 19 18 22 22 C 1.38566 * 120.40616 * 0.02562 * 21 20 19 23 23 C 1.37815 * 120.34103 * 359.97438 * 22 21 20 24 24 C 1.39667 * 119.92370 * 359.72268 * 23 22 21 25 25 C 1.47535 * 120.20060 * 180.27528 * 24 23 22 26 26 O 1.21583 * 119.99631 * 129.14931 * 25 24 23 27 27 N 1.34773 * 119.99657 * 309.15599 * 25 24 23 28 28 C 1.46500 * 119.99578 * 184.75864 * 27 25 24 29 29 C 1.46497 * 120.00522 * 4.75286 * 27 25 24 30 30 H 1.09003 * 109.47262 * 293.93131 * 1 2 3 31 31 H 1.08991 * 109.47341 * 53.93703 * 1 2 3 32 32 H 1.09000 * 109.47096 * 173.93795 * 1 2 3 33 33 H 0.96999 * 120.00394 * 355.25617 * 7 6 4 34 34 H 1.09007 * 109.47272 * 95.24613 * 13 12 2 35 35 H 1.09001 * 109.47124 * 215.24510 * 13 12 2 36 36 H 1.08998 * 109.47157 * 335.24802 * 13 12 2 37 37 H 0.96996 * 120.00329 * 4.60539 * 18 16 14 38 38 H 1.08003 * 119.96641 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.79387 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.82538 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.03740 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47644 * 59.99438 * 28 27 25 43 43 H 1.09004 * 109.47520 * 179.97438 * 28 27 25 44 44 H 1.09005 * 109.47282 * 299.99612 * 28 27 25 45 45 H 1.09009 * 109.46895 * 84.69147 * 29 27 25 46 46 H 1.08995 * 109.47249 * 204.68676 * 29 27 25 47 47 H 1.09000 * 109.47354 * 324.69564 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6208 -1.6106 1.1320 6 6 1.7406 -0.2111 2.4822 7 7 1.6984 -1.0190 3.5190 8 14 1.3978 1.6118 2.7039 9 1 1.1067 1.8905 4.1332 10 1 2.5863 2.3943 2.2791 11 1 0.2278 1.9998 1.8758 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7931 -0.0358 -2.0833 15 8 3.1650 1.0948 -1.8458 16 6 3.1943 -0.7014 -3.3588 17 8 2.7591 -1.8007 -3.6326 18 7 4.0395 -0.0810 -4.2057 19 6 4.3382 -0.6571 -5.4363 20 6 4.2820 -2.0360 -5.5937 21 6 4.5783 -2.6051 -6.8156 22 6 4.9338 -1.8088 -7.8924 23 6 4.9950 -0.4389 -7.7550 24 6 4.6918 0.1523 -6.5265 25 6 4.7494 1.6187 -6.3742 26 8 3.8063 2.2175 -5.8943 27 7 5.8473 2.2943 -6.7672 28 6 5.9478 3.7350 -6.5213 29 6 6.9402 1.5881 -7.4403 30 1 -0.3634 0.4169 0.9393 31 1 -0.3633 0.6049 -0.8307 32 1 -0.3633 -1.0219 -0.1085 33 1 1.8042 -1.9750 3.3936 34 1 0.7903 -2.1450 -2.0771 35 1 2.5010 -2.6053 -1.9033 36 1 1.4386 -2.5731 -0.4756 37 1 4.4395 0.7669 -3.9573 38 1 4.0061 -2.6634 -4.7590 39 1 4.5335 -3.6778 -6.9330 40 1 5.1642 -2.2641 -8.8443 41 1 5.2730 0.1771 -8.5975 42 1 5.8909 3.9255 -5.4496 43 1 6.8989 4.1038 -6.9055 44 1 5.1286 4.2477 -7.0254 45 1 6.7245 1.5167 -8.5064 46 1 7.8712 2.1357 -7.2940 47 1 7.0380 0.5865 -7.0215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320575831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:07 Heat of formation + Delta-G solvation = -43.405146 kcal Electronic energy + Delta-G solvation = -31081.204413 eV Core-core repulsion = 26844.642350 eV Total energy + Delta-G solvation = -4236.562063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.33744 -40.19354 -38.83101 -37.86745 -36.14008 -35.81088 -34.74978 -32.78938 -31.72882 -30.32014 -29.99069 -28.29685 -26.72218 -26.37407 -25.18749 -24.57167 -23.59848 -22.55357 -20.67839 -20.11200 -19.16515 -17.91299 -17.55669 -17.55074 -17.16357 -16.60463 -16.27084 -16.01983 -15.76823 -15.32081 -15.05127 -14.69032 -14.31223 -14.03401 -13.83500 -13.77212 -13.33115 -13.24640 -13.12127 -13.02274 -12.79588 -12.69076 -12.54111 -12.33763 -12.30457 -11.98020 -11.94018 -11.67791 -11.52931 -11.31282 -10.78273 -10.70222 -10.50297 -10.13494 -10.07715 -9.82109 -9.24734 -9.22405 -9.05685 -8.91556 -8.39452 -8.30685 -7.90454 -6.57387 -4.16998 0.64351 1.01108 1.79810 2.39320 2.53971 2.67456 3.38734 3.40586 3.47808 3.61911 3.64019 3.85481 4.13895 4.45005 4.50175 4.61152 4.68768 4.76190 4.89088 4.95056 5.03979 5.09637 5.15869 5.22666 5.25700 5.29781 5.51802 5.60686 5.86776 5.92426 5.95758 6.09755 6.10836 6.13880 6.23095 6.27683 6.40967 6.48925 6.53865 6.69715 6.86763 6.89053 6.96760 7.11981 7.26861 7.68518 7.79995 7.83372 8.12637 8.28017 8.45701 8.81836 9.46564 10.78301 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.002931 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.118491 B = 9551.364039 C =10862.654192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.625 4.625 5 H 0.065 0.935 6 C 0.048 3.952 7 N -0.886 5.886 8 Si 1.028 2.972 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.274 1.274 12 N -0.546 5.546 13 C 0.082 3.918 14 C 0.494 3.506 15 O -0.530 6.530 16 C 0.514 3.486 17 O -0.495 6.495 18 N -0.641 5.641 19 C 0.201 3.799 20 C -0.138 4.138 21 C -0.077 4.077 22 C -0.146 4.146 23 C -0.071 4.071 24 C -0.164 4.164 25 C 0.555 3.445 26 O -0.517 6.517 27 N -0.618 5.618 28 C 0.088 3.912 29 C 0.075 3.925 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.050 0.950 33 H 0.271 0.729 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.424 0.576 38 H 0.159 0.841 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.718 0.482 -25.536 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.663 4.663 5 H 0.083 0.917 6 C -0.160 4.160 7 N -0.518 5.518 8 Si 0.855 3.145 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.200 1.200 12 N -0.277 5.277 13 C -0.061 4.061 14 C 0.275 3.725 15 O -0.408 6.408 16 C 0.298 3.702 17 O -0.370 6.370 18 N -0.286 5.286 19 C 0.103 3.897 20 C -0.158 4.158 21 C -0.095 4.095 22 C -0.165 4.165 23 C -0.089 4.089 24 C -0.170 4.170 25 C 0.343 3.657 26 O -0.392 6.392 27 N -0.353 5.353 28 C -0.054 4.054 29 C -0.068 4.068 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.262 0.738 38 H 0.176 0.824 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.702 1.804 -24.041 25.988 hybrid contribution 0.598 -0.838 -1.226 1.601 sum 10.301 0.966 -25.267 27.303 Atomic orbital electron populations 1.22448 0.98009 1.00648 1.00398 1.19361 0.90761 0.94655 0.81822 0.92651 1.22019 1.39650 1.14076 0.90505 0.91730 1.25608 0.92975 1.05567 0.91849 1.70868 1.42103 1.05577 1.33231 0.84291 0.77757 0.76131 0.76338 1.20795 1.20437 1.20042 1.47954 1.45873 1.12510 1.21339 1.21986 1.00931 0.81268 1.01936 1.19564 0.82008 0.86708 0.84255 1.90739 1.54771 1.18463 1.76844 1.20862 0.78184 0.85493 0.85657 1.90631 1.52833 1.18809 1.74679 1.43120 1.44503 1.25956 1.14981 1.17695 0.95786 0.92032 0.84155 1.21656 1.01324 0.92759 1.00042 1.21270 0.95754 1.00355 0.92162 1.21050 1.02796 0.93245 0.99406 1.21081 0.97387 0.95213 0.95268 1.19573 1.10597 0.92345 0.94514 1.18317 0.82319 0.86936 0.78153 1.90887 1.35280 1.69659 1.43415 1.47695 1.18506 1.09424 1.59650 1.21688 1.02206 0.79245 1.02277 1.22012 0.89392 0.98364 0.96994 0.91551 0.95349 0.93112 0.91876 0.93066 0.90486 0.90183 0.73766 0.82377 0.85102 0.85355 0.85148 0.91670 0.90504 0.91846 0.92340 0.90694 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.99 37.16 0.33 -3.17 16 2 C 0.24 5.81 2.23 -69.09 -0.15 5.66 16 3 H 0.06 1.47 5.64 -51.93 -0.29 1.18 16 4 C -0.63 -17.24 8.22 -34.44 -0.28 -17.52 16 5 H 0.06 1.90 7.58 -52.48 -0.40 1.50 16 6 C 0.05 1.36 5.14 -17.82 -0.09 1.27 16 7 N -0.89 -26.28 13.70 55.43 0.76 -25.52 16 8 Si 1.03 25.08 26.51 -169.99 -4.51 20.57 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.22 6.09 56.52 0.34 -5.88 16 12 N -0.55 -12.11 2.75 -175.81 -0.48 -12.60 16 13 C 0.08 1.55 8.07 59.84 0.48 2.04 16 14 C 0.49 10.64 7.73 -11.63 -0.09 10.55 16 15 O -0.53 -12.61 15.84 5.48 0.09 -12.52 16 16 C 0.51 9.33 7.60 -11.63 -0.09 9.24 16 17 O -0.50 -8.75 10.34 5.48 0.06 -8.69 16 18 N -0.64 -10.29 4.82 -10.12 -0.05 -10.34 16 19 C 0.20 2.77 6.41 -83.53 -0.54 2.24 16 20 C -0.14 -1.70 8.75 -39.42 -0.35 -2.05 16 21 C -0.08 -0.70 10.03 -39.54 -0.40 -1.10 16 22 C -0.15 -1.13 10.02 -39.62 -0.40 -1.53 16 23 C -0.07 -0.61 7.83 -39.20 -0.31 -0.91 16 24 C -0.16 -1.96 4.84 -104.79 -0.51 -2.47 16 25 C 0.55 7.24 6.49 -12.47 -0.08 7.16 16 26 O -0.52 -8.93 16.24 5.29 0.09 -8.85 16 27 N -0.62 -5.80 3.27 -190.76 -0.62 -6.43 16 28 C 0.09 0.71 10.17 59.85 0.61 1.32 16 29 C 0.08 0.42 9.09 59.85 0.54 0.96 16 30 H 0.07 1.51 5.27 -51.93 -0.27 1.24 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.07 7.47 -51.93 -0.39 0.68 16 33 H 0.27 7.95 8.73 -40.82 -0.36 7.60 16 34 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.08 1.37 5.89 -51.93 -0.31 1.07 16 36 H 0.08 1.59 7.06 -51.93 -0.37 1.23 16 37 H 0.42 6.90 7.13 -40.82 -0.29 6.61 16 38 H 0.16 2.14 5.66 -52.48 -0.30 1.85 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.80 6.48 -52.49 -0.34 0.46 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.37 7.73 -51.93 -0.40 -0.03 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.23 7.13 -51.92 -0.37 -0.14 16 46 H 0.07 0.28 7.81 -51.93 -0.41 -0.13 16 47 H 0.08 0.45 6.34 -51.93 -0.33 0.12 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -34.34 379.95 -6.46 -40.80 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.20 Total: 6.18 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -1.31 Total: 11.67 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.40 Total: -54.88 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: 0.23 Total: -30.06 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -4.51 Total: 20.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.34 -6.46 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320575831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.605 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds