Wall clock time and date at job start Wed Apr 1 2020 04:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47235 * 2 1 4 4 C 1.50703 * 109.47204 * 119.99440 * 2 1 3 5 5 H 1.08008 * 119.99858 * 117.59361 * 4 2 1 6 6 C 1.37878 * 120.00502 * 297.60123 * 4 2 1 7 7 N 1.31509 * 120.00208 * 153.73898 * 6 4 2 8 8 Si 1.86799 * 119.99430 * 334.01413 * 6 4 2 9 9 H 1.48501 * 109.47288 * 179.72365 * 8 6 4 10 10 H 1.48501 * 109.47261 * 299.72565 * 8 6 4 11 11 H 1.48501 * 109.47410 * 59.72703 * 8 6 4 12 12 N 1.46496 * 109.47249 * 239.99452 * 2 1 3 13 13 C 1.46496 * 120.00233 * 300.00164 * 12 2 1 14 14 C 1.34779 * 120.00092 * 119.99701 * 12 2 1 15 15 O 1.21365 * 119.99673 * 5.24642 * 14 12 2 16 16 C 1.49358 * 120.00316 * 185.24043 * 14 12 2 17 17 O 1.21365 * 119.99941 * 4.33664 * 16 14 12 18 18 N 1.34775 * 119.99865 * 184.32846 * 16 14 12 19 19 C 1.39117 * 119.99682 * 184.59933 * 18 16 14 20 20 C 1.38898 * 120.17252 * 332.21339 * 19 18 16 21 21 C 1.38015 * 120.06660 * 179.97438 * 20 19 18 22 22 C 1.38566 * 120.40616 * 0.02562 * 21 20 19 23 23 C 1.37815 * 120.34103 * 359.97438 * 22 21 20 24 24 C 1.39667 * 119.92370 * 359.72268 * 23 22 21 25 25 C 1.47535 * 120.20060 * 180.27528 * 24 23 22 26 26 O 1.21583 * 119.99631 * 129.14931 * 25 24 23 27 27 N 1.34773 * 119.99657 * 309.15599 * 25 24 23 28 28 C 1.46500 * 119.99578 * 184.75864 * 27 25 24 29 29 C 1.46497 * 120.00522 * 4.75286 * 27 25 24 30 30 H 1.09003 * 109.47262 * 293.93131 * 1 2 3 31 31 H 1.08991 * 109.47341 * 53.93703 * 1 2 3 32 32 H 1.09000 * 109.47096 * 173.93795 * 1 2 3 33 33 H 0.96999 * 120.00394 * 355.25617 * 7 6 4 34 34 H 1.09007 * 109.47272 * 95.24613 * 13 12 2 35 35 H 1.09001 * 109.47124 * 215.24510 * 13 12 2 36 36 H 1.08998 * 109.47157 * 335.24802 * 13 12 2 37 37 H 0.96996 * 120.00329 * 4.60539 * 18 16 14 38 38 H 1.08003 * 119.96641 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.79387 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.82538 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.03740 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47644 * 59.99438 * 28 27 25 43 43 H 1.09004 * 109.47520 * 179.97438 * 28 27 25 44 44 H 1.09005 * 109.47282 * 299.99612 * 28 27 25 45 45 H 1.09009 * 109.46895 * 84.69147 * 29 27 25 46 46 H 1.08995 * 109.47249 * 204.68676 * 29 27 25 47 47 H 1.09000 * 109.47354 * 324.69564 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6208 -1.6106 1.1320 6 6 1.7406 -0.2111 2.4822 7 7 1.6984 -1.0190 3.5190 8 14 1.3978 1.6118 2.7039 9 1 1.1067 1.8905 4.1332 10 1 2.5863 2.3943 2.2791 11 1 0.2278 1.9998 1.8758 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7931 -0.0358 -2.0833 15 8 3.1650 1.0948 -1.8458 16 6 3.1943 -0.7014 -3.3588 17 8 2.7591 -1.8007 -3.6326 18 7 4.0395 -0.0810 -4.2057 19 6 4.3382 -0.6571 -5.4363 20 6 4.2820 -2.0360 -5.5937 21 6 4.5783 -2.6051 -6.8156 22 6 4.9338 -1.8088 -7.8924 23 6 4.9950 -0.4389 -7.7550 24 6 4.6918 0.1523 -6.5265 25 6 4.7494 1.6187 -6.3742 26 8 3.8063 2.2175 -5.8943 27 7 5.8473 2.2943 -6.7672 28 6 5.9478 3.7350 -6.5213 29 6 6.9402 1.5881 -7.4403 30 1 -0.3634 0.4169 0.9393 31 1 -0.3633 0.6049 -0.8307 32 1 -0.3633 -1.0219 -0.1085 33 1 1.8042 -1.9750 3.3936 34 1 0.7903 -2.1450 -2.0771 35 1 2.5010 -2.6053 -1.9033 36 1 1.4386 -2.5731 -0.4756 37 1 4.4395 0.7669 -3.9573 38 1 4.0061 -2.6634 -4.7590 39 1 4.5335 -3.6778 -6.9330 40 1 5.1642 -2.2641 -8.8443 41 1 5.2730 0.1771 -8.5975 42 1 5.8909 3.9255 -5.4496 43 1 6.8989 4.1038 -6.9055 44 1 5.1286 4.2477 -7.0254 45 1 6.7245 1.5167 -8.5064 46 1 7.8712 2.1357 -7.2940 47 1 7.0380 0.5865 -7.0215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320575831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:06 Heat of formation + Delta-G solvation = -68.030022 kcal Electronic energy + Delta-G solvation = -31082.272228 eV Core-core repulsion = 26844.642350 eV Total energy + Delta-G solvation = -4237.629878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.53717 -41.37021 -40.14872 -39.00635 -37.74313 -36.80995 -36.00791 -34.82887 -32.53281 -32.16765 -31.00379 -28.88103 -28.03868 -27.43727 -26.97395 -26.23674 -24.41299 -23.73089 -22.14572 -21.12199 -20.62132 -19.61727 -19.15937 -18.60377 -18.34321 -17.84010 -17.55232 -17.18330 -16.97239 -16.55874 -16.01896 -15.90165 -15.65265 -15.32608 -15.15645 -15.01354 -14.65485 -14.56550 -14.30506 -14.15828 -13.91755 -13.89040 -13.63169 -13.54722 -13.44460 -13.40601 -13.25655 -12.95158 -12.85113 -12.57968 -12.45504 -12.26430 -11.96906 -11.73302 -11.71476 -11.33034 -11.10102 -10.51680 -10.46259 -9.99168 -9.79120 -9.77940 -9.31044 -8.80884 -6.42123 -0.32153 0.10808 0.50572 1.15106 1.43095 1.48179 1.49640 1.69933 1.94028 1.95625 2.36883 2.40888 2.71315 2.90709 3.08716 3.39617 3.78173 4.06865 4.19724 4.24627 4.29745 4.32636 4.38388 4.40825 4.41147 4.46614 4.51098 4.64840 4.68501 4.70014 4.80976 4.87240 4.89657 4.94508 4.98654 5.01556 5.19011 5.20525 5.31578 5.42143 5.43579 5.48632 5.69246 5.80198 5.88058 5.99232 6.18351 6.23358 6.43719 6.52212 6.80554 6.94863 7.27909 8.52532 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.002931 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.118491 B = 9551.364039 C =10862.654192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.234 3.766 3 H 0.038 0.962 4 C -0.625 4.625 5 H 0.035 0.965 6 C 0.008 3.992 7 N -0.912 5.912 8 Si 1.062 2.938 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.245 1.245 12 N -0.557 5.557 13 C 0.088 3.912 14 C 0.487 3.513 15 O -0.560 6.560 16 C 0.519 3.481 17 O -0.495 6.495 18 N -0.634 5.634 19 C 0.162 3.838 20 C -0.153 4.153 21 C -0.072 4.072 22 C -0.126 4.126 23 C -0.061 4.061 24 C -0.171 4.171 25 C 0.546 3.454 26 O -0.575 6.575 27 N -0.611 5.611 28 C 0.084 3.916 29 C 0.066 3.934 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.261 0.739 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.162 0.838 42 H 0.045 0.955 43 H 0.116 0.884 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.782 0.302 -29.607 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.132 3.868 3 H 0.056 0.944 4 C -0.662 4.662 5 H 0.053 0.947 6 C -0.195 4.195 7 N -0.546 5.546 8 Si 0.884 3.116 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.169 1.169 12 N -0.287 5.287 13 C -0.054 4.054 14 C 0.269 3.731 15 O -0.440 6.440 16 C 0.302 3.698 17 O -0.370 6.370 18 N -0.278 5.278 19 C 0.066 3.934 20 C -0.173 4.173 21 C -0.090 4.090 22 C -0.144 4.144 23 C -0.079 4.079 24 C -0.177 4.177 25 C 0.335 3.665 26 O -0.456 6.456 27 N -0.343 5.343 28 C -0.058 4.058 29 C -0.075 4.075 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.256 0.744 38 H 0.158 0.842 39 H 0.176 0.824 40 H 0.189 0.811 41 H 0.180 0.820 42 H 0.064 0.936 43 H 0.135 0.865 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.821 1.585 -28.192 30.239 hybrid contribution 0.453 -0.855 -0.152 0.979 sum 11.273 0.730 -28.344 30.512 Atomic orbital electron populations 1.22312 0.95841 1.01670 1.00955 1.19166 0.92334 0.93497 0.81794 0.94420 1.22106 1.38966 1.13044 0.92120 0.94660 1.26731 0.92548 1.08481 0.91735 1.70962 1.44425 1.05196 1.33974 0.83843 0.78787 0.71979 0.77037 1.20272 1.20488 1.16950 1.47990 1.46213 1.13566 1.20920 1.22041 1.02118 0.79630 1.01588 1.20189 0.81128 0.86494 0.85301 1.90704 1.55697 1.19850 1.77797 1.20068 0.79223 0.85572 0.84944 1.90624 1.53345 1.18448 1.74579 1.42976 1.43650 1.25455 1.15695 1.17987 0.98732 0.92993 0.83642 1.21619 1.02570 0.91983 1.01134 1.21627 0.94318 1.02020 0.91080 1.21542 0.99829 0.92604 1.00406 1.21480 0.95801 0.96153 0.94492 1.19662 1.11035 0.91659 0.95318 1.18651 0.82559 0.87570 0.77764 1.90850 1.37631 1.70769 1.46318 1.47858 1.18197 1.09960 1.58309 1.21816 1.04000 0.78758 1.01269 1.22335 0.88980 0.98261 0.97955 0.91985 0.93401 0.92219 0.92979 0.91187 0.89442 0.91509 0.74391 0.84200 0.82360 0.81088 0.82017 0.93573 0.86532 0.92716 0.89755 0.88351 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.59 8.99 71.98 0.65 -5.94 16 2 C 0.23 11.77 2.23 44.25 0.10 11.86 16 3 H 0.04 2.04 5.64 -2.39 -0.01 2.03 16 4 C -0.62 -35.51 8.22 25.60 0.21 -35.30 16 5 H 0.04 2.17 7.58 -2.91 -0.02 2.15 16 6 C 0.01 0.46 5.14 84.66 0.43 0.89 16 7 N -0.91 -55.47 13.70 21.45 0.29 -55.18 16 8 Si 1.06 50.89 26.51 68.60 1.82 52.71 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.25 -10.56 6.09 99.48 0.61 -9.95 16 12 N -0.56 -25.26 2.75 -828.50 -2.28 -27.54 16 13 C 0.09 3.39 8.07 127.77 1.03 4.43 16 14 C 0.49 21.70 7.73 87.24 0.67 22.38 16 15 O -0.56 -27.84 15.84 -3.29 -0.05 -27.89 16 16 C 0.52 19.46 7.60 87.24 0.66 20.12 16 17 O -0.49 -17.72 10.34 -3.29 -0.03 -17.76 16 18 N -0.63 -21.19 4.82 -304.27 -1.47 -22.66 16 19 C 0.16 4.45 6.41 38.65 0.25 4.70 16 20 C -0.15 -3.64 8.75 22.38 0.20 -3.44 16 21 C -0.07 -1.07 10.03 22.30 0.22 -0.85 16 22 C -0.13 -1.32 10.02 22.25 0.22 -1.09 16 23 C -0.06 -0.81 7.83 22.51 0.18 -0.63 16 24 C -0.17 -3.86 4.84 -19.98 -0.10 -3.96 16 25 C 0.55 14.13 6.49 86.70 0.56 14.69 16 26 O -0.58 -20.74 16.24 -3.98 -0.06 -20.81 16 27 N -0.61 -10.53 3.27 -875.72 -2.87 -13.40 16 28 C 0.08 1.27 10.17 127.77 1.30 2.57 16 29 C 0.07 0.49 9.09 127.77 1.16 1.65 16 30 H 0.06 2.76 5.27 -2.39 -0.01 2.75 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.48 7.47 -2.39 -0.02 2.46 16 33 H 0.26 15.91 8.73 -92.71 -0.81 15.10 16 34 H 0.07 2.42 8.12 -2.38 -0.02 2.40 16 35 H 0.09 3.17 5.89 -2.39 -0.01 3.16 16 36 H 0.07 2.73 7.06 -2.39 -0.02 2.71 16 37 H 0.42 14.56 7.13 -92.71 -0.66 13.90 16 38 H 0.14 3.80 5.66 -2.91 -0.02 3.79 16 39 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 41 H 0.16 1.12 6.48 -2.91 -0.02 1.10 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.12 0.79 7.73 -2.38 -0.02 0.77 16 44 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.08 0.25 7.13 -2.38 -0.02 0.23 16 46 H 0.10 0.32 7.81 -2.39 -0.02 0.30 16 47 H 0.07 0.63 6.34 -2.39 -0.02 0.61 16 Total: -1.00 -79.65 379.95 3.32 -76.33 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.22 Total: 24.11 kcal Atomic # 6 Polarization: 24.32 SS G_CDS: 7.75 Total: 32.08 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.32 Total: -118.77 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: -0.15 Total: -66.46 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 1.82 Total: 52.71 kcal Total: -79.65 3.32 -76.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320575831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.302 kcal (2) G-P(sol) polarization free energy of solvation -79.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds