Wall clock time and date at job start Wed Apr 1 2020 04:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47273 * 2 1 4 4 C 1.50692 * 109.47149 * 239.99756 * 2 1 3 5 5 H 1.07998 * 120.00460 * 245.23131 * 4 2 1 6 6 C 1.37883 * 119.99887 * 65.23306 * 4 2 1 7 7 N 1.31523 * 119.99589 * 207.32756 * 6 4 2 8 8 Si 1.86794 * 119.99985 * 27.60432 * 6 4 2 9 9 H 1.48506 * 109.47021 * 179.72677 * 8 6 4 10 10 H 1.48499 * 109.47237 * 299.72138 * 8 6 4 11 11 H 1.48497 * 109.47401 * 59.72556 * 8 6 4 12 12 N 1.46498 * 109.46814 * 119.99582 * 2 1 3 13 13 C 1.46503 * 120.00303 * 60.00331 * 12 2 1 14 14 C 1.34780 * 120.00327 * 239.99660 * 12 2 1 15 15 O 1.21361 * 119.99657 * 5.06937 * 14 12 2 16 16 C 1.49355 * 120.00409 * 185.06903 * 14 12 2 17 17 O 1.21379 * 119.99628 * 5.53107 * 16 14 12 18 18 N 1.34769 * 120.00022 * 185.53168 * 16 14 12 19 19 C 1.39756 * 120.00010 * 185.06716 * 18 16 14 20 20 C 1.39046 * 120.00372 * 145.00691 * 19 18 16 21 21 C 1.38197 * 120.21358 * 179.76705 * 20 19 18 22 22 C 1.38035 * 120.23072 * 0.51269 * 21 20 19 23 23 C 1.39582 * 120.00499 * 359.74580 * 22 21 20 24 24 C 1.47860 * 120.10857 * 180.02562 * 23 22 21 25 25 O 1.21557 * 120.00186 * 137.93563 * 24 23 22 26 26 N 1.34777 * 120.00163 * 317.93931 * 24 23 22 27 27 C 1.46502 * 120.00250 * 185.21789 * 26 24 23 28 28 C 1.46500 * 119.99631 * 5.20922 * 26 24 23 29 29 C 1.38657 * 120.00557 * 325.28311 * 19 18 16 30 30 H 1.09010 * 109.47171 * 294.67583 * 1 2 3 31 31 H 1.08997 * 109.46924 * 54.67031 * 1 2 3 32 32 H 1.08994 * 109.47700 * 174.67713 * 1 2 3 33 33 H 0.96997 * 119.99998 * 355.26087 * 7 6 4 34 34 H 1.09001 * 109.46813 * 95.22447 * 13 12 2 35 35 H 1.08995 * 109.47501 * 215.23281 * 13 12 2 36 36 H 1.09000 * 109.46499 * 335.23608 * 13 12 2 37 37 H 0.97000 * 120.00142 * 5.06461 * 18 16 14 38 38 H 1.07999 * 119.89428 * 359.97438 * 20 19 18 39 39 H 1.08007 * 119.88383 * 180.25608 * 21 20 19 40 40 H 1.08003 * 119.99455 * 179.76638 * 22 21 20 41 41 H 1.08999 * 109.47060 * 359.97438 * 27 26 24 42 42 H 1.08997 * 109.47043 * 119.99297 * 27 26 24 43 43 H 1.09000 * 109.46688 * 239.99614 * 27 26 24 44 44 H 1.09009 * 109.46710 * 89.70719 * 28 26 24 45 45 H 1.09002 * 109.47442 * 209.70256 * 28 26 24 46 46 H 1.08992 * 109.47541 * 329.71130 * 28 26 24 47 47 H 1.07998 * 120.10991 * 359.95581 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5818 -1.6351 -1.1336 6 6 1.7905 -0.1798 -2.4798 7 7 1.7195 -0.9713 -3.5278 8 14 1.5714 1.6638 -2.6852 9 1 1.3312 1.9774 -4.1167 10 1 0.4107 2.1174 -1.8776 11 1 2.7982 2.3625 -2.2245 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4282 14 6 2.7932 -0.0356 2.0834 15 8 3.0108 1.1497 1.9400 16 6 3.3840 -0.7684 3.2430 17 8 3.2503 -1.9714 3.3324 18 7 4.0655 -0.0938 4.1900 19 6 4.7081 -0.7896 5.2176 20 6 5.9143 -0.3209 5.7263 21 6 6.5511 -1.0029 6.7457 22 6 5.9993 -2.1596 7.2587 23 6 4.7915 -2.6414 6.7515 24 6 4.1982 -3.8798 7.2996 25 8 3.0019 -3.9407 7.5066 26 7 4.9837 -4.9411 7.5699 27 6 4.3835 -6.2050 8.0043 28 6 6.4377 -4.8309 7.4292 29 6 4.1457 -1.9505 5.7263 30 1 -0.3634 0.4291 0.9339 31 1 -0.3633 0.5943 -0.8384 32 1 -0.3634 -1.0231 -0.0953 33 1 1.9050 -1.9187 -3.4335 34 1 2.4614 -2.7356 1.0537 35 1 1.5326 -2.2627 2.4968 36 1 0.7358 -2.3245 0.9063 37 1 4.1100 0.8747 4.1583 38 1 6.3534 0.5808 5.3256 39 1 7.4858 -0.6318 7.1396 40 1 6.5021 -2.6915 8.0528 41 1 3.3000 -6.0958 8.0504 42 1 4.6397 -6.9917 7.2947 43 1 4.7642 -6.4677 8.9913 44 1 6.8696 -4.4959 8.3723 45 1 6.8521 -5.8039 7.1651 46 1 6.6734 -4.1109 6.6456 47 1 3.2108 -2.3183 5.3301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324357214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:19 Heat of formation + Delta-G solvation = -68.228748 kcal Electronic energy + Delta-G solvation = -30480.993765 eV Core-core repulsion = 26243.355269 eV Total energy + Delta-G solvation = -4237.638495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.36463 -41.39446 -40.25691 -39.04019 -37.68441 -36.76378 -35.99734 -34.80773 -32.39438 -32.15244 -31.19192 -28.86907 -28.04576 -27.47026 -26.97474 -26.26084 -24.33669 -23.70292 -22.16294 -21.12820 -20.63671 -19.63634 -19.11745 -18.66709 -18.02082 -17.71217 -17.40832 -17.17455 -16.97954 -16.74972 -16.41949 -15.88541 -15.70038 -15.19040 -15.16073 -14.82508 -14.70126 -14.53214 -14.35576 -14.33445 -13.92594 -13.87616 -13.59646 -13.41303 -13.39463 -13.37437 -13.21261 -13.03454 -12.81324 -12.56987 -12.43122 -12.31215 -11.98437 -11.75349 -11.67866 -11.35136 -11.04101 -10.56251 -10.40382 -10.06304 -9.76394 -9.74740 -9.35643 -8.82663 -6.42221 -0.25458 0.02288 0.48468 1.17667 1.44146 1.52321 1.53753 1.71451 1.91585 2.03330 2.40557 2.43456 2.69161 2.93921 3.14915 3.39003 3.87092 3.99739 4.09440 4.22522 4.25958 4.29621 4.37575 4.39913 4.43675 4.48556 4.50094 4.65811 4.67873 4.71252 4.77189 4.86626 4.88733 4.89982 5.02090 5.09658 5.14998 5.20306 5.27103 5.31616 5.41858 5.45136 5.70777 5.81045 5.89272 5.97880 6.18089 6.30825 6.46878 6.59865 6.83000 6.96208 7.30723 8.52422 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.002451 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.214250 B =11420.094119 C =12188.845853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.236 3.764 3 H 0.046 0.954 4 C -0.628 4.628 5 H 0.028 0.972 6 C 0.002 3.998 7 N -0.913 5.913 8 Si 1.072 2.928 9 H -0.280 1.280 10 H -0.245 1.245 11 H -0.273 1.273 12 N -0.559 5.559 13 C 0.096 3.904 14 C 0.493 3.507 15 O -0.553 6.553 16 C 0.513 3.487 17 O -0.512 6.512 18 N -0.633 5.633 19 C 0.118 3.882 20 C -0.108 4.108 21 C -0.092 4.092 22 C -0.091 4.091 23 C -0.131 4.131 24 C 0.551 3.449 25 O -0.585 6.585 26 N -0.614 5.614 27 C 0.075 3.925 28 C 0.062 3.938 29 C -0.095 4.095 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.257 0.743 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.433 0.567 38 H 0.161 0.839 39 H 0.181 0.819 40 H 0.167 0.833 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.412 -3.345 26.957 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.134 3.866 3 H 0.064 0.936 4 C -0.666 4.666 5 H 0.046 0.954 6 C -0.201 4.201 7 N -0.546 5.546 8 Si 0.893 3.107 9 H -0.205 1.205 10 H -0.170 1.170 11 H -0.199 1.199 12 N -0.289 5.289 13 C -0.047 4.047 14 C 0.275 3.725 15 O -0.433 6.433 16 C 0.295 3.705 17 O -0.387 6.387 18 N -0.281 5.281 19 C 0.025 3.975 20 C -0.128 4.128 21 C -0.110 4.110 22 C -0.110 4.110 23 C -0.134 4.134 24 C 0.341 3.659 25 O -0.466 6.466 26 N -0.345 5.345 27 C -0.067 4.067 28 C -0.079 4.079 29 C -0.116 4.116 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.273 0.727 38 H 0.179 0.821 39 H 0.198 0.802 40 H 0.184 0.816 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.426 -2.524 25.853 28.795 hybrid contribution 0.023 -1.473 0.294 1.502 sum 12.449 -3.998 26.147 29.234 Atomic orbital electron populations 1.22265 0.95903 1.01685 1.00765 1.19182 0.92470 0.93597 0.81352 0.93613 1.22113 1.41880 1.10017 0.92581 0.95384 1.26906 0.92351 1.09082 0.91742 1.71013 1.42829 1.06282 1.34507 0.83663 0.79078 0.70958 0.76991 1.20498 1.16964 1.19866 1.48011 1.46138 1.13528 1.21270 1.21901 1.00585 0.79843 1.02351 1.20099 0.80987 0.87122 0.84309 1.90680 1.61174 1.15298 1.76173 1.20215 0.79693 0.87249 0.83301 1.90731 1.56627 1.14747 1.76577 1.43021 1.49889 1.11966 1.23208 1.17829 0.94254 0.94655 0.90805 1.21555 0.91154 1.02168 0.97892 1.21408 1.01097 0.93575 0.94888 1.21868 0.92478 0.96771 0.99854 1.19674 0.98057 0.96435 0.99280 1.18748 0.85767 0.84324 0.77089 1.90755 1.17167 1.83726 1.54987 1.47777 1.08985 1.11598 1.66181 1.21855 0.99565 0.83924 1.01338 1.22442 0.76993 1.05014 1.03475 1.21131 0.99653 0.95307 0.95475 0.92842 0.92019 0.92874 0.93317 0.93919 0.89116 0.90883 0.72687 0.82149 0.80199 0.81571 0.92069 0.90355 0.89352 0.89254 0.88952 0.90222 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.29 8.79 71.98 0.63 -5.65 16 2 C 0.24 11.43 2.24 44.24 0.10 11.53 16 3 H 0.05 2.32 5.47 -2.38 -0.01 2.31 16 4 C -0.63 -35.36 8.58 25.60 0.22 -35.14 16 5 H 0.03 1.73 7.80 -2.91 -0.02 1.71 16 6 C 0.00 0.09 5.22 84.65 0.44 0.53 16 7 N -0.91 -55.43 13.70 21.45 0.29 -55.13 16 8 Si 1.07 49.58 26.70 68.60 1.83 51.42 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.25 -10.11 6.14 99.48 0.61 -9.50 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.56 -24.55 2.75 -828.49 -2.28 -26.83 16 13 C 0.10 3.79 8.40 127.77 1.07 4.86 16 14 C 0.49 20.10 7.73 87.24 0.67 20.78 16 15 O -0.55 -23.86 15.84 -3.28 -0.05 -23.92 16 16 C 0.51 17.81 7.55 87.24 0.66 18.47 16 17 O -0.51 -19.30 10.75 -3.34 -0.04 -19.33 16 18 N -0.63 -16.91 5.31 -304.93 -1.62 -18.53 16 19 C 0.12 2.81 6.30 38.17 0.24 3.05 16 20 C -0.11 -1.60 9.96 22.45 0.22 -1.37 16 21 C -0.09 -0.90 10.02 22.21 0.22 -0.68 16 22 C -0.09 -1.16 7.51 22.55 0.17 -0.99 16 23 C -0.13 -2.98 5.15 -20.11 -0.10 -3.09 16 24 C 0.55 14.36 7.32 86.79 0.64 14.99 16 25 O -0.59 -20.70 16.29 -3.90 -0.06 -20.77 16 26 N -0.61 -10.66 3.27 -875.32 -2.87 -13.53 16 27 C 0.08 1.08 10.68 127.77 1.36 2.44 16 28 C 0.06 0.49 8.97 127.77 1.15 1.64 16 29 C -0.09 -2.67 8.31 22.67 0.19 -2.48 16 30 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.06 2.61 5.82 -2.39 -0.01 2.60 16 32 H 0.05 2.22 6.88 -2.39 -0.02 2.20 16 33 H 0.26 15.84 8.73 -92.71 -0.81 15.03 16 34 H 0.04 1.78 8.11 -2.39 -0.02 1.76 16 35 H 0.09 3.31 5.91 -2.39 -0.01 3.30 16 36 H 0.07 2.82 6.54 -2.39 -0.02 2.80 16 37 H 0.43 9.69 8.32 -92.71 -0.77 8.92 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 40 H 0.17 0.98 5.71 -2.91 -0.02 0.97 16 41 H 0.06 1.24 6.91 -2.39 -0.02 1.22 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.09 0.23 7.21 -2.38 -0.02 0.21 16 45 H 0.09 0.42 8.07 -2.39 -0.02 0.40 16 46 H 0.08 0.73 5.58 -2.39 -0.01 0.71 16 47 H 0.11 3.97 6.18 -2.91 -0.02 3.96 16 Total: -1.00 -80.71 381.49 3.22 -77.49 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.12 Total: 20.26 kcal Atomic # 6 Polarization: 20.99 SS G_CDS: 7.89 Total: 28.87 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -6.47 Total: -114.03 kcal Atomic # 8 Polarization: -63.86 SS G_CDS: -0.15 Total: -64.01 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.83 Total: 51.42 kcal Total: -80.71 3.22 -77.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324357214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.264 kcal (2) G-P(sol) polarization free energy of solvation -80.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds