Wall clock time and date at job start Wed Apr 1 2020 04:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 C 1.50699 * 109.46994 * 239.99628 * 2 1 3 5 5 H 1.07993 * 120.00316 * 239.99540 * 4 2 1 6 6 C 1.37874 * 119.99881 * 60.00197 * 4 2 1 7 7 N 1.31520 * 120.00384 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00228 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47342 * 89.99429 * 8 6 4 10 10 H 1.48503 * 109.47263 * 209.99993 * 8 6 4 11 11 H 1.48506 * 109.46802 * 329.99537 * 8 6 4 12 12 N 1.46500 * 109.47177 * 119.99492 * 2 1 3 13 13 C 1.46499 * 119.99876 * 60.00484 * 12 2 1 14 14 C 1.34774 * 120.00134 * 239.99639 * 12 2 1 15 15 O 1.21364 * 120.00093 * 356.43939 * 14 12 2 16 16 C 1.49349 * 119.99813 * 176.43050 * 14 12 2 17 17 O 1.21371 * 120.00507 * 5.92838 * 16 14 12 18 18 N 1.34786 * 119.99983 * 185.92806 * 16 14 12 19 19 C 1.39721 * 119.99796 * 175.31875 * 18 16 14 20 20 C 1.38939 * 120.06864 * 214.81946 * 19 18 16 21 21 C 1.38100 * 119.91498 * 179.72883 * 20 19 18 22 22 C 1.38295 * 120.08004 * 0.57090 * 21 20 19 23 23 C 1.50694 * 119.92239 * 179.72319 * 22 21 20 24 24 C 1.52997 * 109.47472 * 269.97945 * 23 22 21 25 25 C 1.50702 * 109.47388 * 180.02562 * 24 23 22 26 26 N 1.34772 * 120.00049 * 180.02562 * 25 24 23 27 27 O 1.21283 * 119.99852 * 359.97438 * 25 24 23 28 28 C 1.38295 * 120.14945 * 359.70572 * 22 21 20 29 29 C 1.38092 * 120.07872 * 359.97438 * 28 22 21 30 30 H 1.09002 * 109.47296 * 300.00000 * 1 2 3 31 31 H 1.08999 * 109.47561 * 60.00010 * 1 2 3 32 32 H 1.08998 * 109.47077 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00257 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47675 * 95.97826 * 13 12 2 35 35 H 1.09000 * 109.47343 * 215.97796 * 13 12 2 36 36 H 1.09003 * 109.47306 * 335.97827 * 13 12 2 37 37 H 0.97004 * 119.99414 * 355.31527 * 18 16 14 38 38 H 1.07991 * 120.04258 * 0.02562 * 20 19 18 39 39 H 1.08008 * 119.95549 * 180.30080 * 21 20 19 40 40 H 1.09006 * 109.47569 * 29.98601 * 23 22 21 41 41 H 1.08999 * 109.47091 * 149.97872 * 23 22 21 42 42 H 1.08998 * 109.47530 * 300.00271 * 24 23 22 43 43 H 1.09004 * 109.47015 * 60.00371 * 24 23 22 44 44 H 0.96997 * 120.00067 * 359.97438 * 26 25 24 45 45 H 0.97003 * 120.00342 * 180.02562 * 26 25 24 46 46 H 1.08000 * 119.95625 * 180.02562 * 28 22 21 47 47 H 1.08001 * 120.04062 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 1.3426 -2.1619 -4.4117 10 1 2.4865 -0.1416 -5.1123 11 1 3.6293 -1.7585 -3.7122 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7933 -0.0355 2.0833 15 8 3.1399 1.1059 1.8596 16 6 3.2252 -0.7142 3.3416 17 8 2.9700 -1.8878 3.5166 18 7 3.8984 -0.0233 4.2830 19 6 4.2169 -0.6300 5.5007 20 6 4.2204 0.1183 6.6713 21 6 4.5302 -0.4859 7.8739 22 6 4.8481 -1.8312 7.9122 23 6 5.1916 -2.4854 9.2255 24 6 6.6990 -2.3844 9.4668 25 6 7.0426 -3.0392 10.7800 26 7 8.3218 -3.0704 11.2030 27 8 6.1678 -3.5372 11.4565 28 6 4.8511 -2.5776 6.7480 29 6 4.5359 -1.9815 5.5429 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.7081 1.1607 -3.4845 34 1 2.4673 -2.7351 1.0658 35 1 1.5199 -2.2596 2.4955 36 1 0.7430 -2.3282 0.8955 37 1 4.1618 0.8950 4.1150 38 1 3.9766 1.1699 6.6416 39 1 4.5284 0.0941 8.7851 40 1 4.6598 -1.9815 10.0327 41 1 4.8978 -3.5347 9.1966 42 1 7.2308 -2.8884 8.6599 43 1 6.9928 -1.3351 9.4958 44 1 9.0214 -2.6718 10.6622 45 1 8.5431 -3.4922 12.0481 46 1 5.0994 -3.6282 6.7815 47 1 4.5380 -2.5651 4.6341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326082439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:27 Heat of formation + Delta-G solvation = -99.249004 kcal Electronic energy + Delta-G solvation = -29314.752693 eV Core-core repulsion = 25075.769058 eV Total energy + Delta-G solvation = -4238.983634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19283 -40.74745 -40.28929 -39.26160 -37.60210 -36.37134 -34.76085 -34.60629 -33.88675 -31.89447 -31.46978 -30.04070 -27.90216 -27.34984 -26.60230 -24.97075 -23.99101 -22.78930 -21.82897 -21.13357 -20.82542 -19.06378 -18.64923 -18.26307 -18.18109 -17.81937 -17.56064 -17.18105 -16.89438 -16.60760 -16.21797 -16.07396 -15.76804 -15.11141 -15.04530 -14.89086 -14.59924 -14.48690 -14.37422 -14.08388 -13.88910 -13.81288 -13.58938 -13.42206 -13.01909 -12.96128 -12.76375 -12.70002 -12.41923 -12.27392 -12.26801 -12.20005 -12.06200 -11.79012 -11.31434 -11.23454 -10.98576 -10.59260 -10.57387 -10.31548 -9.84489 -9.55506 -9.07076 -8.17935 -6.34318 -0.02701 0.48404 0.61417 1.31784 1.42018 1.43430 1.53480 1.71122 2.09575 2.38659 2.60697 2.65861 2.88067 3.10388 3.27474 3.86489 3.92169 4.08221 4.09837 4.23769 4.39891 4.44957 4.49296 4.51855 4.57250 4.71202 4.73862 4.79719 4.85495 4.97844 4.98488 5.04325 5.14025 5.21948 5.31169 5.32478 5.36958 5.41380 5.50522 5.60553 5.71740 5.87743 5.95293 6.02714 6.06921 6.08981 6.48111 6.52638 6.65138 6.74956 6.97110 7.36359 7.41535 8.86575 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027807 B = 0.001742 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.691307 B =16069.448468 C =16370.678555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.257 3.743 3 H 0.025 0.975 4 C -0.543 4.543 5 H 0.057 0.943 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.561 5.561 13 C 0.078 3.922 14 C 0.486 3.514 15 O -0.565 6.565 16 C 0.518 3.482 17 O -0.506 6.506 18 N -0.637 5.637 19 C 0.118 3.882 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.092 4.092 23 C -0.059 4.059 24 C -0.131 4.131 25 C 0.512 3.488 26 N -0.842 5.842 27 O -0.598 6.598 28 C -0.100 4.100 29 C -0.133 4.133 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.267 0.733 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.428 0.572 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.418 0.582 45 H 0.404 0.596 46 H 0.138 0.862 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.548 -4.983 25.218 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.156 3.844 3 H 0.043 0.957 4 C -0.581 4.581 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.291 5.291 13 C -0.064 4.064 14 C 0.268 3.732 15 O -0.445 6.445 16 C 0.300 3.700 17 O -0.381 6.381 18 N -0.283 5.283 19 C 0.025 3.975 20 C -0.155 4.155 21 C -0.111 4.111 22 C -0.092 4.092 23 C -0.097 4.097 24 C -0.170 4.170 25 C 0.299 3.701 26 N -0.405 5.405 27 O -0.479 6.479 28 C -0.118 4.118 29 C -0.153 4.153 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.267 0.733 38 H 0.163 0.837 39 H 0.171 0.829 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.250 0.750 45 H 0.235 0.765 46 H 0.156 0.844 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.746 -5.359 25.287 28.820 hybrid contribution 0.611 0.211 -1.328 1.476 sum 13.357 -5.148 23.959 27.910 Atomic orbital electron populations 1.21918 0.96416 1.00427 1.00562 1.18843 0.92137 0.92699 0.80696 0.95721 1.21483 1.32423 1.13190 0.91007 0.92437 1.25675 0.94954 0.95590 1.01802 1.69991 1.36877 1.23571 1.24658 0.85446 0.78753 0.78298 0.78460 1.19382 1.20770 1.19816 1.48235 1.45926 1.13627 1.21288 1.22230 1.01014 0.79478 1.03697 1.20223 0.81145 0.86544 0.85258 1.90695 1.56850 1.19070 1.77936 1.20119 0.78681 0.86707 0.84447 1.90632 1.53588 1.15469 1.78432 1.43103 1.53575 1.17992 1.13676 1.18035 1.01052 0.93666 0.84773 1.21169 1.02675 1.01187 0.90467 1.21130 0.98108 0.94243 0.97654 1.19975 1.00268 0.94090 0.94917 1.20224 0.95209 1.01046 0.93193 1.21672 0.97183 1.03879 0.94293 1.21132 0.82690 0.78215 0.88100 1.43818 1.08568 1.61450 1.26667 1.90749 1.49115 1.48884 1.59169 1.21094 0.99107 1.00588 0.91031 1.21291 1.00324 0.94046 0.99678 0.95574 0.90648 0.93427 0.92395 0.92888 0.87903 0.90929 0.73328 0.83663 0.82858 0.90537 0.91279 0.86893 0.86271 0.75036 0.76477 0.84368 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.96 71.98 0.64 -5.78 16 2 C 0.26 13.30 2.62 44.25 0.12 13.41 16 3 H 0.02 1.48 6.90 -2.39 -0.02 1.46 16 4 C -0.54 -29.52 8.37 25.60 0.21 -29.31 16 5 H 0.06 3.10 7.65 -2.91 -0.02 3.08 16 6 C 0.02 1.09 5.30 84.65 0.45 1.53 16 7 N -0.91 -51.35 11.32 21.45 0.24 -51.11 16 8 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 N -0.56 -24.80 2.75 -828.50 -2.28 -27.08 16 13 C 0.08 2.89 8.75 127.77 1.12 4.01 16 14 C 0.49 20.38 7.73 87.24 0.67 21.05 16 15 O -0.56 -26.43 15.82 -3.29 -0.05 -26.48 16 16 C 0.52 17.54 7.61 87.24 0.66 18.21 16 17 O -0.51 -17.45 10.57 -3.31 -0.03 -17.49 16 18 N -0.64 -17.22 5.32 -304.83 -1.62 -18.84 16 19 C 0.12 2.77 6.30 38.22 0.24 3.01 16 20 C -0.14 -2.37 9.97 22.40 0.22 -2.14 16 21 C -0.09 -1.31 9.69 22.25 0.22 -1.10 16 22 C -0.09 -1.38 5.14 -19.84 -0.10 -1.48 16 23 C -0.06 -0.75 4.63 29.85 0.14 -0.62 16 24 C -0.13 -1.01 5.68 29.85 0.17 -0.84 16 25 C 0.51 6.27 8.10 87.66 0.71 6.98 16 26 N -0.84 -3.87 8.87 -173.53 -1.54 -5.41 16 27 O -0.60 -13.61 16.82 -3.04 -0.05 -13.66 16 28 C -0.10 -1.83 9.69 22.25 0.22 -1.61 16 29 C -0.13 -3.18 8.70 22.40 0.19 -2.99 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 32 H 0.05 2.09 6.67 -2.39 -0.02 2.07 16 33 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 3.53 5.36 -2.48 -0.01 3.52 16 36 H 0.07 2.64 6.44 -2.39 -0.02 2.62 16 37 H 0.43 10.41 8.30 -92.71 -0.77 9.64 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.08 1.06 8.04 -2.38 -0.02 1.04 16 41 H 0.07 1.06 8.04 -2.39 -0.02 1.04 16 42 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.42 -0.79 8.83 -92.71 -0.82 -1.60 16 45 H 0.40 1.61 8.93 -92.71 -0.83 0.78 16 46 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.12 3.36 6.22 -2.91 -0.02 3.34 16 Total: -1.00 -74.05 392.08 1.21 -72.84 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -1.37 Total: 20.05 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 5.89 Total: 22.35 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.20 Total: -102.44 kcal Atomic # 8 Polarization: -57.49 SS G_CDS: -0.14 Total: -57.63 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -74.05 1.21 -72.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326082439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.406 kcal (2) G-P(sol) polarization free energy of solvation -74.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds